Rroxscaffold_7G00198860

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0011564
Physical Location & Seq
Reverse (-)
44580621 .. 44581955
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00198860.1

Sequence Viewer

Length: 1335 bp
ATGAAAGATCAAGAATTGAAGAAAAAGCTAGCAGACACCAGGAACAATATCATGGAGAGTTTTGGAGGAGATGACATTGCAACTATAGGAAGTGATTTGATATCGTCCATGAGCAACATTGTGCCTGAAAATTCTTTACTGTCGACCAAATGTTGCATCTTTGCAACCCCAAAATTACTCTTGAAAGATAATGAAAAATCTTATTTACCCACGGCATTCGCCATTGGGCCAGTGCACCATGGCAAACCAGACTTGCAGGAGGCAGAGCAAATTAAACTGAAGTATACACGAGATCTCATTGCTCGAGTCTCACAATGGAATGACACGATTGTGAAGGACTTAGTCGAAGATATTGCAAGTCTTGAGGAACAAGCCCGCCAATACTACGCTGTGCCAGTGAAATTCAATAAAGCAAAGTTTGTAAAACTGTTGTTGGTTGATGGTTGCTTTATCATCGAGCTGTTCCGTAAAAAGCTAGGTGATTCACCTATTTATGAGGCTGACCCAATATATGGTAGGCCTTTCTTACGTGAGGTATTAGGCATTGACTTGTTATTACTAGAAAACCAAATACCTTGGATGGTTCTCGATCGATTGTTTAGCCGCACAACTCGTACTGGTGCAAGTCCCCTGACTCGAGTAACCTTATTCTTCTTTAGTTTCTTGGGAACAGGAGGGTTAGATCTACAAAAGGAAAATAGTTTCATGCCCAGCACTTTAGATCAAAGCAAGCACGTACTTGAGCTGTTAAGAAACTCATTAGTTTGGTCAACTATTCCAGAAGGAGGCGTGCTTGATAAATGGGAGCTAATTCCGAGTGCCTCGAGTCTGATGGAAGCTGGTGTTAAATTCAAGAAGGGTAGTTCATCGAATGGCTTATTGGATATCAAATTCAGTAATGGAGTACTTGAAATACCACCTTTGGTTATTGTCGAACCGACAAAAACTTTCTTCCGAAGCTTGGTTAGCTATGAGCAGTGTTACCATTGGTGCCATCCTAAGATCACTTCTTATGCCATGCTTTTAGATCTTCTCATCAACACTTCAAAAGATATGGATATACTCTGCAAAAACGGAATCATTCAGAATTGGTTGAATCCAGAAGATGCGACCCAGATCTTCAACAACCTTTACAATGATGCAAATGTCAGCCACTTCTATTATCTTGAACTTTGCCGGGAAGTGAACAAGTATTGCAAACGTCGTTGGCCGAGATGGCGAGCAATGTATGTACGAAATCATTTCAGCAGTCCGTGGGCAATCGCTTCTCAAGTTTTGGCAGCTATCATATTTATTCTCACATTGTTGCAAACAGTGTTTAGCATCAAGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

444

Amino Acids

50.63

Weight (kDa)

7.99

Isoelectric Point (pI)

39.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 53 - 433 1.2e-98 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 990
AccB7I CCANNNNNTGG 1 cut(s) 512
AccI GTMKAC 2 cut(s) 143, 284
AciI CCGC 2 cut(s) 376, 604
AcoI YGGCCR 1 cut(s) 1208
AcsI RAATTY 4 cut(s) 130, 401, 848, 890
AcuI CTGAAG 1 cut(s) 299
AfaI GTAC 4 cut(s) 616, 738, 906, 1233
AfiI CCNNNNNNNGG 3 cut(s) 512, 785, 961
AgsI TTSAA 9 cut(s) 19, 184, 406, 853, 911, 1047, 1096, 1123, 1169
AjnI CCWGG 1 cut(s) 38
AjuI GAANNNNNNNTTGG 2 cut(s) 863, 895
AleI CACNNNNGTG 1 cut(s) 329
AluBI AGCT 9 cut(s) 28, 460, 475, 745, 808, 839, 960, 969, 1283
AluI AGCT 9 cut(s) 28, 460, 475, 745, 808, 839, 960, 969, 1283
Alw21I GWGCWC 1 cut(s) 237
Alw26I GTCTC 1 cut(s) 313
Alw44I GTGCAC 1 cut(s) 233
Ama87I CYCGRG 3 cut(s) 303, 636, 823
AoxI GGCC 3 cut(s) 227, 518, 1208
ApaLI GTGCAC 1 cut(s) 233
ApeKI GCWGC 1 cut(s) 1280
ApoI RAATTY 4 cut(s) 130, 401, 848, 890
AspS9I GGNCC 1 cut(s) 227
AsuC2I CCSGG 1 cut(s) 1178
AsuHPI GGTGA 2 cut(s) 477, 491
AsuNHI GCTAGC 1 cut(s) 28
AvaI CYCGRG 3 cut(s) 303, 636, 823
BaeGI GKGCMC 1 cut(s) 237
BanI GGYRCC 1 cut(s) 990
BauI CACGAG 1 cut(s) 288
Bbv12I GWGCWC 1 cut(s) 237
BbvI GCAGC 1 cut(s) 1292
BccI CCATC 5 cut(s) 434, 574, 826, 1002, 1209
BceAI ACGGC 1 cut(s) 228
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 40
BcnI CCSGG 1 cut(s) 1178
BcoDI GTCTC 1 cut(s) 313
BfaI CTAG 3 cut(s) 29, 476, 560
BfmI CTRYAG 1 cut(s) 84
BglI GCCNNNNNGGC 1 cut(s) 1216
BglII AGATCT 4 cut(s) 292, 682, 1027, 1116
BisI GCNGC 2 cut(s) 604, 1281
BlsI GCNGC 2 cut(s) 605, 1282
BmcAI AGTACT 1 cut(s) 906
Bme1390I CCNGG 2 cut(s) 40, 1178
BmeT110I CYCGRG 3 cut(s) 303, 636, 823
BmgT120I GGNCC 1 cut(s) 227
BmiI GGNNCC 1 cut(s) 992
BmrFI CCNGG 2 cut(s) 40, 1178
BmsI GCATC 3 cut(s) 165, 1096, 1129
BmtI GCTAGC 1 cut(s) 32
BpuEI CTTGAG 3 cut(s) 383, 761, 1254
BpuMI CCSGG 1 cut(s) 1178
Bsa29I ATCGAT 1 cut(s) 592
BsaAI YACGTR 2 cut(s) 530, 736
BsaJI CCNNGG 4 cut(s) 210, 238, 575, 1253
Bsc4I CCNNNNNNNGG 3 cut(s) 512, 785, 961
Bse1I ACTGG 3 cut(s) 230, 395, 622
Bse3DI GCAATG 3 cut(s) 75, 297, 1230
BseBI CCWGG 1 cut(s) 40
BseCI ATCGAT 1 cut(s) 592
BseDI CCNNGG 4 cut(s) 210, 238, 575, 1253
BseGI GGATG 2 cut(s) 585, 994
BseLI CCNNNNNNNGG 3 cut(s) 512, 785, 961
BseMI GCAATG 3 cut(s) 75, 297, 1230
BseNI ACTGG 3 cut(s) 230, 395, 622
BseRI GAGGAG 1 cut(s) 81
BseSI GKGCMC 1 cut(s) 237
BseXI GCAGC 1 cut(s) 1292
BseYI CCCAGC 1 cut(s) 710
Bsh1285I CGRYCG 1 cut(s) 592
BshFI GGCC 3 cut(s) 229, 520, 1210
BshNI GGYRCC 1 cut(s) 990
BshVI ATCGAT 1 cut(s) 592
BsiEI CGRYCG 1 cut(s) 592
BsiHKAI GWGCWC 1 cut(s) 237
BsiHKCI CYCGRG 3 cut(s) 303, 636, 823
BsiSI CCGG 1 cut(s) 1177
BslFI GGGAC 1 cut(s) 612
BslI CCNNNNNNNGG 3 cut(s) 512, 785, 961
BsmAI GTCTC 1 cut(s) 313
BsmFI GGGAC 1 cut(s) 612
BsmI GAATGC 1 cut(s) 215
BsnI GGCC 3 cut(s) 229, 520, 1210
BsoBI CYCGRG 3 cut(s) 303, 636, 823
Bsp1286I GDGCHC 1 cut(s) 237
Bsp143I GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
Bsp19I CCATGG 1 cut(s) 238
BspACI CCGC 2 cut(s) 376, 604
BspANI GGCC 3 cut(s) 229, 520, 1210
BspDI ATCGAT 1 cut(s) 592
BspLI GGNNCC 1 cut(s) 992
BspOI GCTAGC 1 cut(s) 32
BspT107I GGYRCC 1 cut(s) 990
BsrDI GCAATG 3 cut(s) 75, 297, 1230
BsrI ACTGG 3 cut(s) 230, 395, 622
BssECI CCNNGG 4 cut(s) 210, 238, 575, 1253
BssMI GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
BssNAI GTATAC 1 cut(s) 285
BssSI CACGAG 1 cut(s) 288
BssT1I CCWWGG 2 cut(s) 238, 575
Bst1107I GTATAC 1 cut(s) 285
Bst2BI CACGAG 1 cut(s) 288
Bst2UI CCWGG 1 cut(s) 40
Bst4CI ACNGT 3 cut(s) 141, 429, 1315
BstBAI YACGTR 2 cut(s) 530, 736
BstC8I GCNNGC 5 cut(s) 30, 376, 731, 791, 1221
BstDEI CTNAG 2 cut(s) 340, 999
BstDSI CCRYGG 3 cut(s) 210, 238, 1253
BstF5I GGATG 2 cut(s) 585, 994
BstKTI GATC 8 cut(s) 10, 295, 592, 685, 724, 1005, 1030, 1119
BstMAI GTCTC 1 cut(s) 313
BstMBI GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
BstMCI CGRYCG 1 cut(s) 592
BstMWI GCNNNNNNNGC 2 cut(s) 966, 1216
BstNI CCWGG 1 cut(s) 40
BstSCI CCNGG 2 cut(s) 38, 1176
BstSFI CTRYAG 1 cut(s) 84
BstSLI GKGCMC 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 1292
BstX2I RGATCY 4 cut(s) 292, 682, 1027, 1116
BstYI RGATCY 4 cut(s) 292, 682, 1027, 1116
BstZ17I GTATAC 1 cut(s) 285
Bsu15I ATCGAT 1 cut(s) 592
BsuRI GGCC 3 cut(s) 229, 520, 1210
BsuTUI ATCGAT 1 cut(s) 592
BtgI CCRYGG 3 cut(s) 210, 238, 1253
BtsCI GGATG 2 cut(s) 585, 994
BtsI GCAGTG 1 cut(s) 983
BtsIMutI CAGTG 4 cut(s) 237, 402, 983, 1320
Cac8I GCNNGC 5 cut(s) 30, 376, 731, 791, 1221
Cfr13I GGNCC 1 cut(s) 227
ClaI ATCGAT 1 cut(s) 592
Csp6I GTAC 4 cut(s) 615, 737, 905, 1232
CviAII CATG 5 cut(s) 52, 109, 239, 706, 1018
CviQI GTAC 4 cut(s) 615, 737, 905, 1232
DdeI CTNAG 2 cut(s) 340, 999
DpnI GATC 8 cut(s) 9, 294, 591, 684, 723, 1004, 1029, 1118
DpnII GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
EaeI YGGCCR 1 cut(s) 1208
Eco130I CCWWGG 2 cut(s) 238, 575
Eco147I AGGCCT 1 cut(s) 520
Eco32I GATATC 2 cut(s) 102, 886
Eco57I CTGAAG 1 cut(s) 299
Eco88I CYCGRG 3 cut(s) 303, 636, 823
EcoRII CCWGG 1 cut(s) 38
EcoRV GATATC 2 cut(s) 102, 886
EcoT14I CCWWGG 2 cut(s) 238, 575
ErhI CCWWGG 2 cut(s) 238, 575
FaeI CATG 5 cut(s) 55, 112, 242, 709, 1021
FaqI GGGAC 1 cut(s) 612
FatI CATG 5 cut(s) 51, 108, 238, 705, 1017
FauI CCCGC 1 cut(s) 383
FblI GTMKAC 2 cut(s) 143, 284
Fnu4HI GCNGC 2 cut(s) 604, 1281
FokI GGATG 2 cut(s) 592, 981
Fsp4HI GCNGC 2 cut(s) 604, 1281
FspBI CTAG 3 cut(s) 29, 476, 560
GluI GCNGC 2 cut(s) 604, 1281
GsaI CCCAGC 1 cut(s) 714
HaeIII GGCC 3 cut(s) 229, 520, 1210
HapII CCGG 1 cut(s) 1177
Hin1II CATG 5 cut(s) 55, 112, 242, 709, 1021
HincII GTYRAC 2 cut(s) 144, 771
HindII GTYRAC 2 cut(s) 144, 771
HindIII AAGCTT 1 cut(s) 958
HinfI GANTC 6 cut(s) 306, 482, 634, 826, 1077, 1096
HpaII CCGG 1 cut(s) 1177
HphI GGTGA 2 cut(s) 477, 491
Hpy166II GTNNAC 5 cut(s) 144, 235, 285, 771, 1186
Hpy188I TCNGA 4 cut(s) 816, 831, 956, 1086
Hpy188III TCNNGA 9 cut(s) 11, 181, 362, 587, 779, 853, 1100, 1166, 1327
Hpy8I GTNNAC 5 cut(s) 144, 235, 285, 771, 1186
Hpy99I CGWCG 1 cut(s) 1206
HpyAV CCTTC 3 cut(s) 328, 776, 850
HpyCH4III ACNGT 3 cut(s) 141, 429, 1315
HpyCH4IV ACGT 3 cut(s) 529, 735, 1201
HpyF10VI GCNNNNNNNGC 2 cut(s) 966, 1216
HpyF3I CTNAG 2 cut(s) 340, 999
HpySE526I ACGT 3 cut(s) 529, 735, 1201
Hsp92II CATG 5 cut(s) 55, 112, 242, 709, 1021
Kzo9I GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
LmnI GCTCC 1 cut(s) 805
Lsp1109I GCAGC 1 cut(s) 1292
LweI GCATC 3 cut(s) 165, 1096, 1129
MaeI CTAG 3 cut(s) 29, 476, 560
MaeII ACGT 3 cut(s) 529, 735, 1201
MaeIII GTNAC 2 cut(s) 640, 980
MalI GATC 8 cut(s) 9, 294, 591, 684, 723, 1004, 1029, 1118
MboI GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
MboII GAAGA 7 cut(s) 31, 359, 643, 943, 1022, 1111, 1115
MflI RGATCY 4 cut(s) 292, 682, 1027, 1116
MhlI GDGCHC 1 cut(s) 237
MluCI AATT 9 cut(s) 14, 130, 173, 270, 401, 810, 848, 890, 1087
MlyI GAGTC 3 cut(s) 315, 628, 835
MnlI CCTC 8 cut(s) 59, 253, 358, 490, 526, 668, 779, 832
MseI TTAA 4 cut(s) 273, 749, 846, 1333
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 1 cut(s) 1177
MspR9I CCNGG 2 cut(s) 40, 1178
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 40
MwoI GCNNNNNNNGC 2 cut(s) 966, 1216
NciI CCSGG 1 cut(s) 1178
NcoI CCATGG 1 cut(s) 238
NdeII GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
NheI GCTAGC 1 cut(s) 28
NlaIII CATG 5 cut(s) 55, 112, 242, 709, 1021
NlaIV GGNNCC 1 cut(s) 992
NmeAIII GCCGAG 1 cut(s) 1236
OliI CACNNNNGTG 1 cut(s) 329
PaeR7I CTCGAG 3 cut(s) 303, 636, 823
PceI AGGCCT 1 cut(s) 520
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 3 cut(s) 482, 1077, 1096
PflFI GACNNNGTC 1 cut(s) 341
PflMI CCANNNNNTGG 1 cut(s) 512
PkrI GCNGC 2 cut(s) 605, 1282
Ple19I CGATCG 1 cut(s) 592
PleI GAGTC 3 cut(s) 314, 628, 834
PpsI GAGTC 3 cut(s) 314, 628, 834
Ppu21I YACGTR 2 cut(s) 530, 736
Psp6I CCWGG 1 cut(s) 38
PspFI CCCAGC 1 cut(s) 710
PspGI CCWGG 1 cut(s) 38
PspN4I GGNNCC 1 cut(s) 992
PspPI GGNCC 1 cut(s) 227
PspXI VCTCGAGB 3 cut(s) 303, 636, 823
PsuI RGATCY 4 cut(s) 292, 682, 1027, 1116
PsyI GACNNNGTC 1 cut(s) 341
PvuI CGATCG 1 cut(s) 592
RsaI GTAC 4 cut(s) 616, 738, 906, 1233
RsaNI GTAC 4 cut(s) 615, 737, 905, 1232
RseI CAYNNNNRTG 1 cut(s) 329
SalI GTCGAC 1 cut(s) 142
SaqAI TTAA 4 cut(s) 273, 749, 846, 1333
SatI GCNGC 2 cut(s) 604, 1281
Sau3AI GATC 8 cut(s) 7, 292, 589, 682, 721, 1002, 1027, 1116
Sau96I GGNCC 1 cut(s) 227
ScaI AGTACT 1 cut(s) 906
SchI GAGTC 3 cut(s) 315, 628, 835
ScrFI CCNGG 2 cut(s) 40, 1178
SduI GDGCHC 1 cut(s) 237
SfaNI GCATC 3 cut(s) 165, 1096, 1129
SfcI CTRYAG 1 cut(s) 84
Sfr274I CTCGAG 3 cut(s) 303, 636, 823
SlaI CTCGAG 3 cut(s) 303, 636, 823
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 6 cut(s) 303, 362, 636, 740, 823, 1269
SmoI CTYRAG 6 cut(s) 303, 362, 636, 740, 823, 1269
Sse9I AATT 9 cut(s) 14, 130, 173, 270, 401, 810, 848, 890, 1087
SseBI AGGCCT 1 cut(s) 520
SsiI CCGC 2 cut(s) 376, 604
SspMI CTAG 3 cut(s) 29, 476, 560
StuI AGGCCT 1 cut(s) 520
StyD4I CCNGG 2 cut(s) 38, 1176
StyI CCWWGG 2 cut(s) 238, 575
TaaI ACNGT 3 cut(s) 141, 429, 1315
TaiI ACGT 3 cut(s) 532, 738, 1204
TasI AATT 9 cut(s) 14, 130, 173, 270, 401, 810, 848, 890, 1087
TatI WGTACW 1 cut(s) 904
TauI GCSGC 1 cut(s) 606
TfiI GAWTC 3 cut(s) 482, 1077, 1096
Tru1I TTAA 4 cut(s) 273, 749, 846, 1333
Tru9I TTAA 4 cut(s) 273, 749, 846, 1333
TscAI CASTG 4 cut(s) 237, 402, 983, 1320
TseI GCWGC 1 cut(s) 1280
TspDTI ATGAA 4 cut(s) 17, 207, 694, 855
TspGWI ACGGA 3 cut(s) 455, 1089, 1242
TspRI CASTG 4 cut(s) 237, 402, 983, 1320
Tth111I GACNNNGTC 1 cut(s) 341
Van91I CCANNNNNTGG 1 cut(s) 512
VneI GTGCAC 1 cut(s) 233
XapI RAATTY 4 cut(s) 130, 401, 848, 890
XhoI CTCGAG 3 cut(s) 303, 636, 823
XmiI GTMKAC 2 cut(s) 143, 284
XspI CTAG 3 cut(s) 29, 476, 560
ZrmI AGTACT 1 cut(s) 906
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.