Rh7AG260100

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0011564
Physical Location & Seq
Forward (+)
26547401 .. 26548141
741 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG260100.1

Sequence Viewer

Length: 741 bp
ATGGTGCTCGATCGATTGTTTAGGTGGACCTGTCCTTATTGGATAAAGCCCCTGACTCAGCTAGCCTTGGACTGTATAGCGACTGGACGATCTCATCATGAAAATCAAACTATCTTGATACCCAGCACTTTGGATCAAAGCAAGCATCTACTTGAGCTATTGAGAAGTTCATTAATTGGATCAACTATGACACAAGGAGTTCAGTATGATGAATGGGAATTAATTCCGAGTGCCTCAAGTTTAATAGAAGCTGGAGTGAAATTCAAGCCTAGTACAGATGGTGGCATGTTGGATATCAAATTTAGTAATGGGATACTCGAAATACCACCTTTCACTATTCATGAGGCAACTGAATCTTTATTCCGAAACATGATAAGTCTTGAACAGTGTTACAACAGGTGTGAGCCTAGGATCTCTAGTTATGCCATGCTCTTAGATATACTCATCAACACTCCGAAGGACTTGGATATCCTATGCAAAAAAGAAATTGTTCGAAACTGGTTGAATCCAGAAGAGGCCACCCAGGTGTTCAACAAGCTTTATTATGATGCATGTTTCACCGAGTTCTATTACCACAAGCTTTGCAAGGATGTGAACACGTATTGCAAACGTCGTTGGCCAAGATGGCGAGCAATATATGTTAGAAATCATTTCAGCAGTCCGTGGGCAATTGCTTCACAAGTGTTCGCAGCTATCATATTTGTTCTTGCATTATTGCAAACAGTTTTCAGCATCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

246

Amino Acids

28.57

Weight (kDa)

6.99

Isoelectric Point (pI)

51.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 2 - 236 1.5e-56 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 141, 187, 419
AcoI YGGCCR 1 cut(s) 617
AcsI RAATTY 2 cut(s) 260, 299
AfaI GTAC 1 cut(s) 274
AflIII ACRYGT 1 cut(s) 597
AgsI TTSAA 4 cut(s) 265, 383, 505, 532
AjnI CCWGG 1 cut(s) 522
AleI CACNNNNGTG 1 cut(s) 524
AluBI AGCT 6 cut(s) 61, 157, 251, 538, 580, 692
AluI AGCT 6 cut(s) 61, 157, 251, 538, 580, 692
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 3 cut(s) 141, 187, 419
AoxI GGCC 2 cut(s) 516, 617
ApeKI GCWGC 1 cut(s) 689
ApoI RAATTY 2 cut(s) 260, 299
AseI ATTAAT 2 cut(s) 173, 221
Asp700I GAANNNNTTC 2 cut(s) 222, 489
AspA2I CCTAGG 1 cut(s) 407
AspS9I GGNCC 1 cut(s) 27
AsuHPI GGTGA 1 cut(s) 550
AsuII TTCGAA 1 cut(s) 493
AsuNHI GCTAGC 1 cut(s) 61
AvaII GGWCC 1 cut(s) 27
AvrII CCTAGG 1 cut(s) 407
BalI TGGCCA 1 cut(s) 619
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 701
BccI CCATC 2 cut(s) 272, 618
BciT130I CCWGG 1 cut(s) 524
BciVI GTATCC 1 cut(s) 306
BfaI CTAG 4 cut(s) 62, 270, 408, 417
BfuI GTATCC 1 cut(s) 306
BglI GCCNNNNNGGC 1 cut(s) 625
BisI GCNGC 1 cut(s) 690
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 1 cut(s) 691
Bme1390I CCNGG 1 cut(s) 524
Bme18I GGWCC 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 27
BmrFI CCNGG 1 cut(s) 524
BmsI GCATC 2 cut(s) 154, 538
BmtI GCTAGC 1 cut(s) 65
BpmI CTGGAG 1 cut(s) 273
Bpu14I TTCGAA 1 cut(s) 493
BpuEI CTTGAG 2 cut(s) 173, 220
Bsa29I ATCGAT 1 cut(s) 13
BsaAI YACGTR 1 cut(s) 600
BsaJI CCNNGG 4 cut(s) 66, 407, 522, 662
Bse1I ACTGG 2 cut(s) 88, 503
BseBI CCWGG 1 cut(s) 524
BseCI ATCGAT 1 cut(s) 13
BseDI CCNNGG 4 cut(s) 66, 407, 522, 662
BseGI GGATG 1 cut(s) 595
BseMII CTCAG 1 cut(s) 71
BseNI ACTGG 2 cut(s) 88, 503
BseXI GCAGC 1 cut(s) 701
BseYI CCCAGC 1 cut(s) 122
Bsh1285I CGRYCG 1 cut(s) 13
BshFI GGCC 2 cut(s) 518, 619
BshVI ATCGAT 1 cut(s) 13
BsiEI CGRYCG 1 cut(s) 13
BsiHKAI GWGCWC 1 cut(s) 9
BsnI GGCC 2 cut(s) 518, 619
Bsp119I TTCGAA 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 9
Bsp143I GATC 5 cut(s) 10, 89, 133, 179, 411
BspANI GGCC 2 cut(s) 518, 619
BspCNI CTCAG 1 cut(s) 70
BspDI ATCGAT 1 cut(s) 13
BspHI TCATGA 2 cut(s) 97, 340
BspOI GCTAGC 1 cut(s) 65
BspPI GGATC 3 cut(s) 141, 187, 419
BspT104I TTCGAA 1 cut(s) 493
BsrI ACTGG 2 cut(s) 88, 503
BssECI CCNNGG 4 cut(s) 66, 407, 522, 662
BssMI GATC 5 cut(s) 10, 89, 133, 179, 411
BssT1I CCWWGG 2 cut(s) 66, 407
Bst2UI CCWGG 1 cut(s) 524
Bst4CI ACNGT 3 cut(s) 74, 387, 724
Bst6I CTCTTC 1 cut(s) 507
BstBAI YACGTR 1 cut(s) 600
BstBI TTCGAA 1 cut(s) 493
BstC8I GCNNGC 3 cut(s) 63, 143, 630
BstDEI CTNAG 2 cut(s) 57, 433
BstDSI CCRYGG 1 cut(s) 662
BstF5I GGATG 1 cut(s) 595
BstKTI GATC 5 cut(s) 13, 92, 136, 182, 414
BstMBI GATC 5 cut(s) 10, 89, 133, 179, 411
BstMCI CGRYCG 1 cut(s) 13
BstMWI GCNNNNNNNGC 1 cut(s) 625
BstNI CCWGG 1 cut(s) 524
BstNSI RCATGY 2 cut(s) 289, 555
BstSCI CCNGG 1 cut(s) 522
BstV1I GCAGC 1 cut(s) 701
BstX2I RGATCY 1 cut(s) 411
BstXI CCANNNNNNTGG 1 cut(s) 130
BstYI RGATCY 1 cut(s) 411
Bsu15I ATCGAT 1 cut(s) 13
BsuI GTATCC 1 cut(s) 306
BsuRI GGCC 2 cut(s) 518, 619
BsuTUI ATCGAT 1 cut(s) 13
BtgI CCRYGG 1 cut(s) 662
BtsCI GGATG 1 cut(s) 595
BtsIMutI CAGTG 1 cut(s) 392
Cac8I GCNNGC 3 cut(s) 63, 143, 630
CciI TCATGA 2 cut(s) 97, 340
Cfr13I GGNCC 1 cut(s) 27
ClaI ATCGAT 1 cut(s) 13
Csp6I GTAC 1 cut(s) 273
CspCI CAANNNNNGTGG 2 cut(s) 563, 598
CviAII CATG 6 cut(s) 98, 286, 341, 370, 427, 552
CviQI GTAC 1 cut(s) 273
DdeI CTNAG 2 cut(s) 57, 433
DpnI GATC 5 cut(s) 12, 91, 135, 181, 413
DpnII GATC 5 cut(s) 10, 89, 133, 179, 411
EaeI YGGCCR 1 cut(s) 617
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 2 cut(s) 66, 407
Eco32I GATATC 2 cut(s) 295, 469
Eco47I GGWCC 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 522
EcoRV GATATC 2 cut(s) 295, 469
EcoT14I CCWWGG 2 cut(s) 66, 407
EcoT22I ATGCAT 1 cut(s) 553
ErhI CCWWGG 2 cut(s) 66, 407
FaeI CATG 6 cut(s) 101, 289, 344, 373, 430, 555
FatI CATG 6 cut(s) 97, 285, 340, 369, 426, 551
Fnu4HI GCNGC 1 cut(s) 690
FokI GGATG 1 cut(s) 602
Fsp4HI GCNGC 1 cut(s) 690
FspBI CTAG 4 cut(s) 62, 270, 408, 417
GluI GCNGC 1 cut(s) 690
GsaI CCCAGC 1 cut(s) 126
GsuI CTGGAG 1 cut(s) 273
HaeIII GGCC 2 cut(s) 518, 619
Hin1II CATG 6 cut(s) 101, 289, 344, 373, 430, 555
HindIII AAGCTT 2 cut(s) 536, 578
HinfI GANTC 3 cut(s) 55, 353, 505
HphI GGTGA 1 cut(s) 550
Hpy166II GTNNAC 2 cut(s) 27, 595
Hpy188I TCNGA 3 cut(s) 228, 365, 456
Hpy188III TCNNGA 5 cut(s) 98, 115, 341, 380, 509
Hpy8I GTNNAC 2 cut(s) 27, 595
Hpy99I CGWCG 1 cut(s) 615
HpyAV CCTTC 1 cut(s) 451
HpyCH4III ACNGT 3 cut(s) 74, 387, 724
HpyCH4IV ACGT 2 cut(s) 599, 610
HpyCH4V TGCA 6 cut(s) 477, 551, 585, 606, 710, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 625
HpyF3I CTNAG 2 cut(s) 57, 433
HpySE526I ACGT 2 cut(s) 599, 610
Hsp92II CATG 6 cut(s) 101, 289, 344, 373, 430, 555
Kzo9I GATC 5 cut(s) 10, 89, 133, 179, 411
Lsp1109I GCAGC 1 cut(s) 701
LweI GCATC 2 cut(s) 154, 538
MaeI CTAG 4 cut(s) 62, 270, 408, 417
MaeII ACGT 2 cut(s) 599, 610
MaeIII GTNAC 1 cut(s) 389
MalI GATC 5 cut(s) 12, 91, 135, 181, 413
MboI GATC 5 cut(s) 10, 89, 133, 179, 411
MboII GAAGA 1 cut(s) 524
MfeI CAATTG 1 cut(s) 669
MflI RGATCY 1 cut(s) 411
MhlI GDGCHC 1 cut(s) 9
MlsI TGGCCA 1 cut(s) 619
MluCI AATT 7 cut(s) 174, 218, 222, 260, 299, 486, 669
MluNI TGGCCA 1 cut(s) 619
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 270
MnlI CCTC 3 cut(s) 244, 337, 508
Mox20I TGGCCA 1 cut(s) 619
Mph1103I ATGCAT 1 cut(s) 553
MroXI GAANNNNTTC 2 cut(s) 222, 489
MscI TGGCCA 1 cut(s) 619
MseI TTAA 4 cut(s) 173, 221, 242, 739
MslI CAYNNNNRTG 1 cut(s) 524
Msp20I TGGCCA 1 cut(s) 619
MspR9I CCNGG 1 cut(s) 524
MunI CAATTG 1 cut(s) 669
MvaI CCWGG 1 cut(s) 524
MwoI GCNNNNNNNGC 1 cut(s) 625
NdeII GATC 5 cut(s) 10, 89, 133, 179, 411
NheI GCTAGC 1 cut(s) 61
NlaIII CATG 6 cut(s) 101, 289, 344, 373, 430, 555
NsiI ATGCAT 1 cut(s) 553
NspI RCATGY 2 cut(s) 289, 555
NspV TTCGAA 1 cut(s) 493
OliI CACNNNNGTG 1 cut(s) 524
PagI TCATGA 2 cut(s) 97, 340
PdmI GAANNNNTTC 2 cut(s) 222, 489
PfeI GAWTC 2 cut(s) 353, 505
PkrI GCNGC 1 cut(s) 691
Ple19I CGATCG 1 cut(s) 13
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Ppu21I YACGTR 1 cut(s) 600
PshBI ATTAAT 2 cut(s) 173, 221
Psp6I CCWGG 1 cut(s) 522
PspFI CCCAGC 1 cut(s) 122
PspGI CCWGG 1 cut(s) 522
PspPI GGNCC 1 cut(s) 27
PsuI RGATCY 1 cut(s) 411
PvuI CGATCG 1 cut(s) 13
RsaI GTAC 1 cut(s) 274
RsaNI GTAC 1 cut(s) 273
RseI CAYNNNNRTG 1 cut(s) 524
SaqAI TTAA 4 cut(s) 173, 221, 242, 739
SatI GCNGC 1 cut(s) 690
Sau3AI GATC 5 cut(s) 10, 89, 133, 179, 411
Sau96I GGNCC 1 cut(s) 27
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 1 cut(s) 524
SduI GDGCHC 1 cut(s) 9
SfaNI GCATC 2 cut(s) 154, 538
SfuI TTCGAA 1 cut(s) 493
SinI GGWCC 1 cut(s) 27
SmiMI CAYNNNNRTG 1 cut(s) 524
SmlI CTYRAG 2 cut(s) 152, 235
SmoI CTYRAG 2 cut(s) 152, 235
Sse9I AATT 7 cut(s) 174, 218, 222, 260, 299, 486, 669
SspMI CTAG 4 cut(s) 62, 270, 408, 417
StyD4I CCNGG 1 cut(s) 522
StyI CCWWGG 2 cut(s) 66, 407
TaaI ACNGT 3 cut(s) 74, 387, 724
TaiI ACGT 2 cut(s) 602, 613
TaqI TCGA 4 cut(s) 9, 13, 318, 493
TasI AATT 7 cut(s) 174, 218, 222, 260, 299, 486, 669
TatI WGTACW 1 cut(s) 272
TfiI GAWTC 2 cut(s) 353, 505
Tru1I TTAA 4 cut(s) 173, 221, 242, 739
Tru9I TTAA 4 cut(s) 173, 221, 242, 739
TscAI CASTG 1 cut(s) 392
TseI GCWGC 1 cut(s) 689
TspDTI ATGAA 4 cut(s) 114, 159, 225, 329
TspGWI ACGGA 1 cut(s) 651
TspRI CASTG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 27
VspI ATTAAT 2 cut(s) 173, 221
XapI RAATTY 2 cut(s) 260, 299
XceI RCATGY 2 cut(s) 289, 555
XmaJI CCTAGG 1 cut(s) 407
XmnI GAANNNNTTC 2 cut(s) 222, 489
XspI CTAG 4 cut(s) 62, 270, 408, 417
Zsp2I ATGCAT 1 cut(s) 553
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.