Rh6BG119200

UPF0481 protein At3g47200-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0011564
Physical Location & Seq
Forward (+)
18487923 .. 18493706
5784 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG119200.1

Sequence Viewer

Length: 1059 bp
ATGTCCAATTACAACATGGATTTCCAGTTGGATGATGATGCCCTACCATCGATGCATGAAAGTGTCCAATTTGATGATAGTGAAACCCAAGATGTTGGGCGTCTTTTTGTGAATGAGCAAACAATTCCTGCTAAAAACAGAAATAATGCAGCCAATGAGGGTAACAAAAAAAAAGGGAGAGGGAAAACTATAATTAAATGGGGTCAGCGTGGAGTGCGAGAAAGAGTTAAGTGGGGAAAACAAGGAGTACCGGTGTCTCCAAGGGAAAAATGTGCACAGTATTCCCTTTTCATTGGTAGTTTGGCGGCTGACCCTGGATTGTATCCTATTGATGTCAAGGATTGGCGGCATTTTGACAAGGACGACAACCATCAAAGGGCTTGGAGATGTATTGAGGAAAAACAAAATATAGCCATCACTTTGTTAAACACTCCCCAGCACAGTTTGGGACGAAGCAAGCGTCTACATCTACTTGAGCTATTGAGAAGTTCATTAATTGGATCAACTACGACAGGAGGAGGTGACCTTAATAAATGGGAATTAATTCCGAGTGCCTCAAGTTTAATAGAAGCTGGAGTGAAAATCAGGAAGCTAGCTAGTACAGATGGTGGCATGTTGGATATCAAATTTAGTAATGGGATACTCGAAATACCACCTTTCATTATTCATGAGGCAACTGAATCTTTATTCCGAAACATGATAAGCTTTGAACAGTGTTACTACAGCTGTGAGCATAGGATCACTTGTTATGCGATGCTGTTAGATGTACTCATCAACACTCCGAAGGACATGGATATACTTGTCAAAAATGGAATTATTCGAAACTGGTTGAATCCAGAAGAGGCCACCCAGATCTTCAACAAGCTTTATTATGATGCATGTGTCACTAAGTTCTATTACCTCGAGCTTTGCAAGGAAGTGAACAAGTATTGCAAACGTCGTTGGCCAAGATGGCGAGCAATCTATTTGGCCTTCCTGGCATTATATTGTGAAATCATGAACCTTCATTGCAGCATCAACAAGGAAGAATTTGCTTGTAGCCCCAATGATAATATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF247

Protein Analysis

352

Amino Acids

40.55

Weight (kDa)

7.94

Isoelectric Point (pI)

50.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF247 PF03140 148 - 322 2.2e-45 Plant protein of unknown function
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 463
AciI CCGC 2 cut(s) 305, 346
AclWI GGATC 2 cut(s) 508, 746
AcoI YGGCCR 1 cut(s) 944
AcsI RAATTY 2 cut(s) 626, 1028
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 3 cut(s) 249, 601, 768
AfiI CCNNNNNNNGG 1 cut(s) 376
AgeI ACCGGT 1 cut(s) 250
AgsI TTSAA 3 cut(s) 710, 832, 859
AjnI CCWGG 2 cut(s) 313, 975
AluBI AGCT 8 cut(s) 478, 572, 592, 596, 705, 726, 865, 907
AluI AGCT 8 cut(s) 478, 572, 592, 596, 705, 726, 865, 907
Alw21I GWGCWC 1 cut(s) 277
Alw26I GTCTC 1 cut(s) 261
Alw44I GTGCAC 1 cut(s) 273
AlwI GGATC 2 cut(s) 508, 746
Ama87I CYCGRG 1 cut(s) 902
AoxI GGCC 3 cut(s) 843, 944, 969
ApaLI GTGCAC 1 cut(s) 273
ApeKI GCWGC 2 cut(s) 149, 1011
ApoI RAATTY 2 cut(s) 626, 1028
ArsI GACNNNNNNTTYG 2 cut(s) 445, 477
AseI ATTAAT 2 cut(s) 494, 542
AsiGI ACCGGT 1 cut(s) 250
Asp700I GAANNNNTTC 1 cut(s) 543
AsuHPI GGTGA 1 cut(s) 533
AsuII TTCGAA 1 cut(s) 820
AsuNHI GCTAGC 1 cut(s) 592
AvaI CYCGRG 1 cut(s) 902
BaeGI GKGCMC 1 cut(s) 277
BalI TGGCCA 1 cut(s) 946
Bbv12I GWGCWC 1 cut(s) 277
BbvI GCAGC 2 cut(s) 161, 1023
BccI CCATC 5 cut(s) 55, 378, 422, 599, 945
BciT130I CCWGG 2 cut(s) 315, 977
BciVI GTATCC 2 cut(s) 333, 633
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 2 cut(s) 593, 597
BfmI CTRYAG 1 cut(s) 721
BfuI GTATCC 2 cut(s) 333, 633
BglI GCCNNNNNGGC 2 cut(s) 952, 977
BglII AGATCT 1 cut(s) 852
BisI GCNGC 4 cut(s) 150, 306, 347, 1012
BlsI GCNGC 4 cut(s) 151, 307, 348, 1013
Bme1390I CCNGG 2 cut(s) 315, 977
BmeT110I CYCGRG 1 cut(s) 902
BmrFI CCNGG 2 cut(s) 315, 977
BmsI GCATC 5 cut(s) 28, 42, 744, 865, 1023
BmtI GCTAGC 1 cut(s) 596
BpmI CTGGAG 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 820
BpuEI CTTGAG 2 cut(s) 494, 541
Bsa29I ATCGAT 1 cut(s) 50
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 2 cut(s) 260, 313
BsaWI WCCGGW 1 cut(s) 250
BsaXI ACNNNNNCTCC 2 cut(s) 237, 267
Bsc4I CCNNNNNNNGG 1 cut(s) 376
Bse118I RCCGGY 1 cut(s) 250
Bse1I ACTGG 2 cut(s) 25, 830
Bse3DI GCAATG 1 cut(s) 1006
BseBI CCWGG 2 cut(s) 315, 977
BseCI ATCGAT 1 cut(s) 50
BseDI CCNNGG 2 cut(s) 260, 313
BseGI GGATG 1 cut(s) 37
BseLI CCNNNNNNNGG 1 cut(s) 376
BseMI GCAATG 1 cut(s) 1006
BseNI ACTGG 2 cut(s) 25, 830
BseRI GAGGAG 1 cut(s) 531
BseSI GKGCMC 1 cut(s) 277
BseXI GCAGC 2 cut(s) 161, 1023
BseYI CCCAGC 1 cut(s) 435
BshFI GGCC 3 cut(s) 845, 946, 971
BshTI ACCGGT 1 cut(s) 250
BshVI ATCGAT 1 cut(s) 50
BsiHKAI GWGCWC 1 cut(s) 277
BsiHKCI CYCGRG 1 cut(s) 902
BsiSI CCGG 1 cut(s) 251
BslFI GGGAC 1 cut(s) 462
BslI CCNNNNNNNGG 1 cut(s) 376
BsmAI GTCTC 1 cut(s) 261
BsmFI GGGAC 1 cut(s) 462
BsnI GGCC 3 cut(s) 845, 946, 971
BsoBI CYCGRG 1 cut(s) 902
Bsp119I TTCGAA 1 cut(s) 820
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 3 cut(s) 500, 738, 852
BspACI CCGC 2 cut(s) 305, 346
BspANI GGCC 3 cut(s) 845, 946, 971
BspDI ATCGAT 1 cut(s) 50
BspHI TCATGA 2 cut(s) 667, 996
BspOI GCTAGC 1 cut(s) 596
BspPI GGATC 2 cut(s) 508, 746
BspT104I TTCGAA 1 cut(s) 820
BsrDI GCAATG 1 cut(s) 1006
BsrFI RCCGGY 1 cut(s) 250
BsrI ACTGG 2 cut(s) 25, 830
BssAI RCCGGY 1 cut(s) 250
BssECI CCNNGG 2 cut(s) 260, 313
BssMI GATC 3 cut(s) 500, 738, 852
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 2 cut(s) 315, 977
Bst4CI ACNGT 3 cut(s) 279, 443, 714
Bst6I CTCTTC 1 cut(s) 834
BstACI GRCGYC 1 cut(s) 100
BstBI TTCGAA 1 cut(s) 820
BstC8I GCNNGC 3 cut(s) 458, 594, 957
BstDEI CTNAG 1 cut(s) 888
BstEII GGTNACC 1 cut(s) 521
BstF5I GGATG 1 cut(s) 37
BstKTI GATC 3 cut(s) 503, 741, 855
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 3 cut(s) 500, 738, 852
BstMWI GCNNNNNNNGC 3 cut(s) 214, 952, 977
BstNI CCWGG 2 cut(s) 315, 977
BstNSI RCATGY 2 cut(s) 616, 882
BstPI GGTNACC 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 313, 975
BstSFI CTRYAG 1 cut(s) 721
BstSLI GKGCMC 1 cut(s) 277
BstV1I GCAGC 2 cut(s) 161, 1023
BstX2I RGATCY 1 cut(s) 852
BstXI CCANNNNNNTGG 1 cut(s) 95
BstYI RGATCY 1 cut(s) 852
Bsu15I ATCGAT 1 cut(s) 50
BsuI GTATCC 2 cut(s) 333, 633
BsuRI GGCC 3 cut(s) 845, 946, 971
BsuTUI ATCGAT 1 cut(s) 50
BtgZI GCGATG 1 cut(s) 767
BtsCI GGATG 1 cut(s) 37
BtsIMutI CAGTG 1 cut(s) 719
Cac8I GCNNGC 3 cut(s) 458, 594, 957
CciI TCATGA 2 cut(s) 667, 996
Cfr10I RCCGGY 1 cut(s) 250
ClaI ATCGAT 1 cut(s) 50
CseI GACGC 2 cut(s) 89, 449
Csp6I GTAC 3 cut(s) 248, 600, 767
CspAI ACCGGT 1 cut(s) 250
CviAII CATG 8 cut(s) 16, 56, 613, 668, 697, 790, 879, 997
CviQI GTAC 3 cut(s) 248, 600, 767
DdeI CTNAG 1 cut(s) 888
DpnI GATC 3 cut(s) 502, 740, 854
DpnII GATC 3 cut(s) 500, 738, 852
EaeI YGGCCR 1 cut(s) 944
Eam1104I CTCTTC 1 cut(s) 834
EarI CTCTTC 1 cut(s) 834
Eco130I CCWWGG 1 cut(s) 260
Eco32I GATATC 1 cut(s) 622
Eco88I CYCGRG 1 cut(s) 902
Eco91I GGTNACC 1 cut(s) 521
EcoO65I GGTNACC 1 cut(s) 521
EcoRII CCWGG 2 cut(s) 313, 975
EcoRV GATATC 1 cut(s) 622
EcoT14I CCWWGG 1 cut(s) 260
EcoT22I ATGCAT 2 cut(s) 57, 880
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 8 cut(s) 19, 59, 616, 671, 700, 793, 882, 1000
FaqI GGGAC 1 cut(s) 462
FatI CATG 8 cut(s) 15, 55, 612, 667, 696, 789, 878, 996
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 4 cut(s) 150, 306, 347, 1012
FokI GGATG 1 cut(s) 44
Fsp4HI GCNGC 4 cut(s) 150, 306, 347, 1012
FspBI CTAG 2 cut(s) 593, 597
GluI GCNGC 4 cut(s) 150, 306, 347, 1012
GsaI CCCAGC 1 cut(s) 439
GsuI CTGGAG 1 cut(s) 594
HaeIII GGCC 3 cut(s) 845, 946, 971
HapII CCGG 1 cut(s) 251
HgaI GACGC 2 cut(s) 89, 449
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 8 cut(s) 19, 59, 616, 671, 700, 793, 882, 1000
HindIII AAGCTT 2 cut(s) 703, 863
HinfI GANTC 2 cut(s) 680, 832
HpaII CCGG 1 cut(s) 251
HphI GGTGA 1 cut(s) 533
Hpy166II GTNNAC 3 cut(s) 275, 464, 922
Hpy188I TCNGA 3 cut(s) 549, 692, 783
Hpy188III TCNNGA 4 cut(s) 586, 668, 836, 997
Hpy8I GTNNAC 3 cut(s) 275, 464, 922
Hpy99I CGWCG 1 cut(s) 942
HpyAV CCTTC 3 cut(s) 778, 982, 1013
HpyCH4III ACNGT 3 cut(s) 279, 443, 714
HpyCH4IV ACGT 1 cut(s) 937
HpyCH4V TGCA 7 cut(s) 55, 149, 275, 878, 912, 933, 1011
HpyF10VI GCNNNNNNNGC 3 cut(s) 214, 952, 977
HpyF3I CTNAG 1 cut(s) 888
HpySE526I ACGT 1 cut(s) 937
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 8 cut(s) 19, 59, 616, 671, 700, 793, 882, 1000
Kzo9I GATC 3 cut(s) 500, 738, 852
Lsp1109I GCAGC 2 cut(s) 161, 1023
LweI GCATC 5 cut(s) 28, 42, 744, 865, 1023
MaeI CTAG 2 cut(s) 593, 597
MaeII ACGT 1 cut(s) 937
MaeIII GTNAC 4 cut(s) 161, 521, 716, 883
MalI GATC 3 cut(s) 502, 740, 854
MboI GATC 3 cut(s) 500, 738, 852
MboII GAAGA 3 cut(s) 847, 851, 1037
MflI RGATCY 1 cut(s) 852
MhlI GDGCHC 1 cut(s) 277
MlsI TGGCCA 1 cut(s) 946
MluNI TGGCCA 1 cut(s) 946
MmeI TCCRAC 2 cut(s) 9, 597
MnlI CCTC 9 cut(s) 151, 173, 388, 509, 512, 565, 664, 835, 911
Mox20I TGGCCA 1 cut(s) 946
Mph1103I ATGCAT 2 cut(s) 57, 880
MroXI GAANNNNTTC 1 cut(s) 543
MscI TGGCCA 1 cut(s) 946
MseI TTAA 7 cut(s) 195, 228, 425, 494, 528, 542, 563
MslI CAYNNNNRTG 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 946
MspA1I CMGCKG 1 cut(s) 726
MspI CCGG 1 cut(s) 251
MspR9I CCNGG 2 cut(s) 315, 977
MvaI CCWGG 2 cut(s) 315, 977
MwoI GCNNNNNNNGC 3 cut(s) 214, 952, 977
NdeII GATC 3 cut(s) 500, 738, 852
NheI GCTAGC 1 cut(s) 592
NlaIII CATG 8 cut(s) 19, 59, 616, 671, 700, 793, 882, 1000
NmuCI GTSAC 2 cut(s) 521, 883
NsiI ATGCAT 2 cut(s) 57, 880
NspI RCATGY 2 cut(s) 616, 882
NspV TTCGAA 1 cut(s) 820
PaeR7I CTCGAG 1 cut(s) 902
PagI TCATGA 2 cut(s) 667, 996
PcsI WCGNNNNNNNCGW 1 cut(s) 457
PdmI GAANNNNTTC 1 cut(s) 543
PfeI GAWTC 2 cut(s) 680, 832
PinAI ACCGGT 1 cut(s) 250
PkrI GCNGC 4 cut(s) 151, 307, 348, 1013
PshBI ATTAAT 2 cut(s) 494, 542
Psp6I CCWGG 2 cut(s) 313, 975
PspEI GGTNACC 1 cut(s) 521
PspFI CCCAGC 1 cut(s) 435
PspGI CCWGG 2 cut(s) 313, 975
PspXI VCTCGAGB 1 cut(s) 902
PsuI RGATCY 1 cut(s) 852
PvuII CAGCTG 1 cut(s) 726
RsaI GTAC 3 cut(s) 249, 601, 768
RsaNI GTAC 3 cut(s) 248, 600, 767
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 7 cut(s) 195, 228, 425, 494, 528, 542, 563
SatI GCNGC 4 cut(s) 150, 306, 347, 1012
Sau3AI GATC 3 cut(s) 500, 738, 852
ScrFI CCNGG 2 cut(s) 315, 977
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 5 cut(s) 28, 42, 744, 865, 1023
SfcI CTRYAG 1 cut(s) 721
Sfr274I CTCGAG 1 cut(s) 902
SfuI TTCGAA 1 cut(s) 820
SlaI CTCGAG 1 cut(s) 902
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 3 cut(s) 473, 556, 902
SmoI CTYRAG 3 cut(s) 473, 556, 902
SsiI CCGC 2 cut(s) 305, 346
SspMI CTAG 2 cut(s) 593, 597
StyD4I CCNGG 2 cut(s) 313, 975
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 3 cut(s) 279, 443, 714
TaiI ACGT 1 cut(s) 940
TaqI TCGA 4 cut(s) 50, 645, 820, 903
TatI WGTACW 2 cut(s) 599, 766
TauI GCSGC 2 cut(s) 308, 349
TfiI GAWTC 2 cut(s) 680, 832
Tru1I TTAA 7 cut(s) 195, 228, 425, 494, 528, 542, 563
Tru9I TTAA 7 cut(s) 195, 228, 425, 494, 528, 542, 563
TscAI CASTG 1 cut(s) 719
TseFI GTSAC 2 cut(s) 521, 883
TseI GCWGC 2 cut(s) 149, 1011
Tsp45I GTSAC 2 cut(s) 521, 883
TspDTI ATGAA 7 cut(s) 72, 280, 480, 649, 656, 995, 1013
TspRI CASTG 1 cut(s) 719
VneI GTGCAC 1 cut(s) 273
VspI ATTAAT 2 cut(s) 494, 542
XapI RAATTY 2 cut(s) 626, 1028
XceI RCATGY 2 cut(s) 616, 882
XcmI CCANNNNNNNNNTGG 1 cut(s) 13
XhoI CTCGAG 1 cut(s) 902
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 1 cut(s) 543
XspI CTAG 2 cut(s) 593, 597
Zsp2I ATGCAT 2 cut(s) 57, 880
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.