Rmu_sc0003760.1_g000015

PAP_fibrillin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003760.1
OG0011205
Physical Location & Seq
Forward (+)
55980 .. 59220
3241 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 990 bp
atgggaagggaaatgaaatttctggagaactttccattccgatgtttgctctcctccttccgcccccgctcctctctctccgacgacacccccaccgacggcgaccgtccggcggcgaaaatcaccgacgagtggggcgaggccgccgagccggagcccgagcccgagtcgacaatctccgaatcggaccctccggtgaacgaggacgagtggggaggagctgatgaggccgtggagttcgggaatggaactccggccaaagctgaggctgagagcacggaagaggtggaggaggtcggttctaagcttactgagctgaagaggtgcttggtagatacgttctatgggactgaattgggctttcgggccgggtcggaggtgagagcggaagtggtggagttggttaaccagttggaggcggcgaatcccactccggcgccgacggagaacccggggctacttgatggcaactgggttttactgtacactgcatcttctgagctgttgccacttctggcagcaggtagcacatctttgttgaaagtcgataaaattaaccaatcaattgacaccagcagtcagacaattctgaactccatcacattgtccggcccttttgccactttctctttcagtgcatctgctaactttgaagtcagaagtccttcaagaatccaggttgaattcaaggaaggcacctttcagccaccggacataaagtcaagcattggtctcccacaagatgtggaaatatttgggcagagaatcaatttgtcacctgtccagcaaactctcagtcctctgcaggaggttgttgcgagtatctcaagaaccatctctggtcagcaatcacttaaggttcccattccaggtgagcggacccagtcttggcttcttactacgtaccttgatggtgatctccgaatctcaaggggggatggtggtctctttgttcttgcaaaagaagggagtcctctccttgatcagtaa

Protein Analysis

329

Amino Acids

35.61

Weight (kDa)

4.32

Isoelectric Point (pI)

46.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAP_fibrillin PF04755 105 - 320 1.3e-71 PAP_fibrillin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011205)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G35490
fragaria_vesca FvH4_5g22910 FvH4_5g22910 FvH4_5g22910
malus_domestica MD06G1025700.v1.1 MD16G1280700.v1.1
prunus_persica Prupe.5G029300_v2.0.a1
pyrus_communis pycom06g02090 pycom16g25080
rosa_chinensis RchiOBHm_Chr7g0211641
rosa_laevigata RLG00000002988
rosa_multiflora Rmu_sc0003760.1_g000015 Rmu_sc0004232.1_g000010
rosa_roxburghii Rroxscaffold_3G00247650
rosa_rugosa Rorug07G0126400
rosa_samantha Rh7AG259200 Rh7BG253500 Rh7CG276200 Rh7DG266800
rosa_wichuraiana Rw7G022160

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 512
AccB1I GGYRCC 2 cut(s) 436, 695
AccBSI CCGCTC 3 cut(s) 69, 386, 877
AccI GTMKAC 1 cut(s) 170
AciI CCGC 7 cut(s) 61, 67, 113, 144, 386, 419, 877
AcoI YGGCCR 1 cut(s) 255
AcsI RAATTY 2 cut(s) 17, 683
AcuI CTGAAG 1 cut(s) 338
AcyI GRCGYC 1 cut(s) 437
AfaI GTAC 2 cut(s) 485, 905
AfiI CCNNNNNNNGG 6 cut(s) 98, 112, 132, 415, 869, 888
AflII CTTAAG 1 cut(s) 854
AgsI TTSAA 5 cut(s) 541, 653, 669, 683, 688
AhdI GACNNNNNGTC 1 cut(s) 718
AjnI CCWGG 2 cut(s) 675, 868
AjuI GAANNNNNNNTTGG 2 cut(s) 311, 343
AluBI AGCT 5 cut(s) 221, 263, 307, 316, 502
AluI AGCT 5 cut(s) 221, 263, 307, 316, 502
Alw21I GWGCWC 1 cut(s) 278
Alw26I GTCTC 2 cut(s) 737, 950
Ama87I CYCGRG 3 cut(s) 158, 164, 451
AoxI GGCC 5 cut(s) 141, 228, 255, 366, 610
ApeKI GCWGC 1 cut(s) 518
ApoI RAATTY 2 cut(s) 17, 683
ArsI GACNNNNNNTTYG 2 cut(s) 781, 813
Asp700I GAANNNNTTC 1 cut(s) 664
AspLEI GCGC 1 cut(s) 439
AspS9I GGNCC 4 cut(s) 187, 366, 611, 879
AsuC2I CCSGG 3 cut(s) 370, 452, 453
AsuHPI GGTGA 6 cut(s) 115, 208, 391, 768, 884, 926
AvaI CYCGRG 3 cut(s) 158, 164, 451
AvaII GGWCC 2 cut(s) 187, 879
BanI GGYRCC 2 cut(s) 436, 695
BanII GRGCYC 2 cut(s) 159, 165
Bbv12I GWGCWC 1 cut(s) 278
BbvCI CCTCAGC 1 cut(s) 264
BbvI GCAGC 1 cut(s) 530
BccI CCATC 5 cut(s) 458, 605, 842, 905, 932
BceAI ACGGC 2 cut(s) 115, 215
BciT130I CCWGG 2 cut(s) 677, 870
BclI TGATCA 1 cut(s) 982
BcnI CCSGG 3 cut(s) 370, 452, 453
BcoDI GTCTC 2 cut(s) 737, 950
BfmI CTRYAG 1 cut(s) 803
BfoI RGCGCY 1 cut(s) 440
BfrI CTTAAG 1 cut(s) 854
BfuAI ACCTGC 1 cut(s) 512
BisI GCNGC 4 cut(s) 114, 144, 420, 519
BlsI GCNGC 4 cut(s) 115, 145, 421, 520
Bme1390I CCNGG 5 cut(s) 370, 452, 453, 677, 870
Bme18I GGWCC 2 cut(s) 187, 879
BmeRI GACNNNNNGTC 1 cut(s) 718
BmeT110I CYCGRG 3 cut(s) 158, 164, 451
BmgT120I GGNCC 4 cut(s) 187, 366, 611, 879
BmiI GGNNCC 6 cut(s) 156, 189, 438, 697, 861, 881
BmrFI CCNGG 5 cut(s) 370, 452, 453, 677, 870
BmrI ACTGGG 2 cut(s) 481, 877
BmsI GCATC 2 cut(s) 500, 647
BmuI ACTGGG 2 cut(s) 481, 877
BpmI CTGGAG 1 cut(s) 44
Bpu10I CCTNAGC 1 cut(s) 264
BpuEI CTTGAG 2 cut(s) 811, 913
BpuMI CCSGG 3 cut(s) 370, 452, 453
BsaAI YACGTR 1 cut(s) 903
BsaBI GATNNNNATC 1 cut(s) 915
BsaHI GRCGYC 1 cut(s) 437
BsaI GGTCTC 2 cut(s) 737, 950
BsaJI CCNNGG 3 cut(s) 231, 451, 452
BsaWI WCCGGW 2 cut(s) 193, 709
Bsc4I CCNNNNNNNGG 6 cut(s) 98, 112, 132, 415, 869, 888
Bse1I ACTGG 3 cut(s) 409, 476, 883
Bse8I GATNNNNATC 1 cut(s) 915
BseBI CCWGG 2 cut(s) 677, 870
BseDI CCNNGG 3 cut(s) 231, 451, 452
BseGI GGATG 1 cut(s) 943
BseJI GATNNNNATC 1 cut(s) 915
BseLI CCNNNNNNNGG 6 cut(s) 98, 112, 132, 415, 869, 888
BseMII CTCAG 5 cut(s) 255, 261, 303, 489, 808
BseNI ACTGG 3 cut(s) 409, 476, 883
BseRI GAGGAG 4 cut(s) 43, 61, 231, 305
BseXI GCAGC 1 cut(s) 530
Bsh1285I CGRYCG 1 cut(s) 106
BshFI GGCC 5 cut(s) 143, 230, 257, 368, 612
BshNI GGYRCC 2 cut(s) 436, 695
BsiEI CGRYCG 1 cut(s) 106
BsiHKAI GWGCWC 1 cut(s) 278
BsiHKCI CYCGRG 3 cut(s) 158, 164, 451
BsiSI CCGG 9 cut(s) 110, 152, 194, 254, 369, 434, 452, 609, 710
BslFI GGGAC 1 cut(s) 361
BslI CCNNNNNNNGG 6 cut(s) 98, 112, 132, 415, 869, 888
BsmAI GTCTC 2 cut(s) 737, 950
BsmFI GGGAC 1 cut(s) 361
BsnI GGCC 5 cut(s) 143, 230, 257, 368, 612
Bso31I GGTCTC 2 cut(s) 737, 950
BsoBI CYCGRG 3 cut(s) 158, 164, 451
Bsp1286I GDGCHC 3 cut(s) 159, 165, 278
Bsp1407I TGTACA 1 cut(s) 483
Bsp143I GATC 2 cut(s) 916, 982
BspACI CCGC 7 cut(s) 61, 67, 113, 144, 386, 419, 877
BspANI GGCC 5 cut(s) 143, 230, 257, 368, 612
BspCNI CTCAG 5 cut(s) 256, 262, 304, 490, 807
BspLI GGNNCC 6 cut(s) 156, 189, 438, 697, 861, 881
BspMAI CTGCAG 1 cut(s) 807
BspMI ACCTGC 1 cut(s) 512
BspT107I GGYRCC 2 cut(s) 436, 695
BspTI CTTAAG 1 cut(s) 854
BspTNI GGTCTC 2 cut(s) 737, 950
BsrBI CCGCTC 3 cut(s) 69, 386, 877
BsrGI TGTACA 1 cut(s) 483
BsrI ACTGG 3 cut(s) 409, 476, 883
BssECI CCNNGG 3 cut(s) 231, 451, 452
BssMI GATC 2 cut(s) 916, 982
BssNI GRCGYC 1 cut(s) 437
Bst2UI CCWGG 2 cut(s) 677, 870
Bst4CI ACNGT 2 cut(s) 107, 483
Bst6I CTCTTC 2 cut(s) 276, 314
BstACI GRCGYC 1 cut(s) 437
BstAFI CTTAAG 1 cut(s) 854
BstAUI TGTACA 1 cut(s) 483
BstBAI YACGTR 1 cut(s) 903
BstDEI CTNAG 6 cut(s) 264, 270, 303, 312, 498, 794
BstDSI CCRYGG 1 cut(s) 231
BstF5I GGATG 1 cut(s) 943
BstH2I RGCGCY 1 cut(s) 440
BstHHI GCGC 1 cut(s) 439
BstKTI GATC 2 cut(s) 919, 985
BstMAI GTCTC 2 cut(s) 737, 950
BstMBI GATC 2 cut(s) 916, 982
BstMCI CGRYCG 1 cut(s) 106
BstMWI GCNNNNNNNGC 2 cut(s) 227, 313
BstNI CCWGG 2 cut(s) 677, 870
BstSCI CCNGG 5 cut(s) 368, 450, 451, 675, 868
BstSFI CTRYAG 1 cut(s) 803
BstSNI TACGTA 1 cut(s) 903
BstV1I GCAGC 1 cut(s) 530
BsuRI GGCC 5 cut(s) 143, 230, 257, 368, 612
BtgI CCRYGG 1 cut(s) 231
BtsCI GGATG 1 cut(s) 943
BtsI GCAGTG 1 cut(s) 486
BtsIMutI CAGTG 2 cut(s) 486, 640
BveI ACCTGC 1 cut(s) 512
CfoI GCGC 1 cut(s) 439
Cfr13I GGNCC 4 cut(s) 187, 366, 611, 879
Cfr9I CCCGGG 1 cut(s) 451
Csp6I GTAC 2 cut(s) 484, 904
CviQI GTAC 2 cut(s) 484, 904
DdeI CTNAG 6 cut(s) 264, 270, 303, 312, 498, 794
DinI GGCGCC 1 cut(s) 438
DpnI GATC 2 cut(s) 918, 984
DpnII GATC 2 cut(s) 916, 982
DriI GACNNNNNGTC 1 cut(s) 718
EaeI YGGCCR 1 cut(s) 255
Eam1104I CTCTTC 2 cut(s) 276, 314
Eam1105I GACNNNNNGTC 1 cut(s) 718
EarI CTCTTC 2 cut(s) 276, 314
EciI GGCGGA 1 cut(s) 50
Eco105I TACGTA 1 cut(s) 903
Eco24I GRGCYC 2 cut(s) 159, 165
Eco31I GGTCTC 2 cut(s) 737, 950
Eco47I GGWCC 2 cut(s) 187, 879
Eco57I CTGAAG 1 cut(s) 338
Eco88I CYCGRG 3 cut(s) 158, 164, 451
EcoRI GAATTC 1 cut(s) 683
EcoRII CCWGG 2 cut(s) 675, 868
EcoT38I GRGCYC 2 cut(s) 159, 165
EgeI GGCGCC 1 cut(s) 438
EheI GGCGCC 1 cut(s) 438
FaiI YATR 2 cut(s) 345, 716
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FaqI GGGAC 1 cut(s) 361
FauI CCCGC 1 cut(s) 74
FbaI TGATCA 1 cut(s) 982
FblI GTMKAC 1 cut(s) 170
Fnu4HI GCNGC 4 cut(s) 114, 144, 420, 519
FokI GGATG 1 cut(s) 950
FriOI GRGCYC 2 cut(s) 159, 165
Fsp4HI GCNGC 4 cut(s) 114, 144, 420, 519
GlaI GCGC 1 cut(s) 438
GluI GCNGC 4 cut(s) 114, 144, 420, 519
GsuI CTGGAG 1 cut(s) 44
HaeII RGCGCY 1 cut(s) 440
HaeIII GGCC 5 cut(s) 143, 230, 257, 368, 612
HapII CCGG 9 cut(s) 110, 152, 194, 254, 369, 434, 452, 609, 710
HhaI GCGC 1 cut(s) 439
Hin1I GRCGYC 1 cut(s) 437
Hin6I GCGC 1 cut(s) 437
HinP1I GCGC 1 cut(s) 437
HincII GTYRAC 2 cut(s) 171, 406
HindII GTYRAC 2 cut(s) 171, 406
HindIII AAGCTT 1 cut(s) 305
HinfI GANTC 7 cut(s) 167, 182, 424, 672, 765, 924, 970
HpaI GTTAAC 1 cut(s) 406
HpaII CCGG 9 cut(s) 110, 152, 194, 254, 369, 434, 452, 609, 710
HphI GGTGA 6 cut(s) 115, 208, 391, 768, 884, 926
Hpy166II GTNNAC 4 cut(s) 171, 199, 406, 486
Hpy188III TCNNGA 4 cut(s) 23, 241, 669, 828
Hpy8I GTNNAC 4 cut(s) 171, 199, 406, 486
Hpy99I CGWCG 4 cut(s) 86, 101, 131, 445
HpyAV CCTTC 4 cut(s) 67, 675, 686, 959
HpyCH4III ACNGT 2 cut(s) 107, 483
HpyCH4IV ACGT 2 cut(s) 338, 902
HpyCH4V TGCA 4 cut(s) 491, 638, 805, 959
HpyF10VI GCNNNNNNNGC 2 cut(s) 227, 313
HpyF3I CTNAG 6 cut(s) 264, 270, 303, 312, 498, 794
HpySE526I ACGT 2 cut(s) 338, 902
Hsp92I GRCGYC 1 cut(s) 437
HspAI GCGC 1 cut(s) 437
KasI GGCGCC 1 cut(s) 436
Ksp22I TGATCA 1 cut(s) 982
KspAI GTTAAC 1 cut(s) 406
Kzo9I GATC 2 cut(s) 916, 982
LmnI GCTCC 3 cut(s) 74, 154, 218
Lsp1109I GCAGC 1 cut(s) 530
LweI GCATC 2 cut(s) 500, 647
MaeII ACGT 2 cut(s) 338, 902
MaeIII GTNAC 1 cut(s) 774
MalI GATC 2 cut(s) 918, 984
MbiI CCGCTC 3 cut(s) 69, 386, 877
MboI GATC 2 cut(s) 916, 982
MboII GAAGA 3 cut(s) 293, 331, 486
MfeI CAATTG 1 cut(s) 564
MhlI GDGCHC 3 cut(s) 159, 165, 278
MluCI AATT 7 cut(s) 17, 353, 552, 564, 585, 683, 769
Mly113I GGCGCC 1 cut(s) 437
MlyI GAGTC 2 cut(s) 176, 979
MmeI TCCRAC 3 cut(s) 105, 354, 393
MroXI GAANNNNTTC 1 cut(s) 664
MseI TTAA 3 cut(s) 405, 555, 855
MslI CAYNNNNRTG 1 cut(s) 40
MspCI CTTAAG 1 cut(s) 854
MspI CCGG 9 cut(s) 110, 152, 194, 254, 369, 434, 452, 609, 710
MspR9I CCNGG 5 cut(s) 370, 452, 453, 677, 870
MunI CAATTG 1 cut(s) 564
MvaI CCWGG 2 cut(s) 677, 870
MwoI GCNNNNNNNGC 2 cut(s) 227, 313
NarI GGCGCC 1 cut(s) 437
NciI CCSGG 3 cut(s) 370, 452, 453
NdeII GATC 2 cut(s) 916, 982
NlaIV GGNNCC 6 cut(s) 156, 189, 438, 697, 861, 881
NmeAIII GCCGAG 1 cut(s) 172
NmuCI GTSAC 1 cut(s) 774
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PdmI GAANNNNTTC 1 cut(s) 664
PfeI GAWTC 5 cut(s) 182, 424, 672, 765, 924
PflFI GACNNNGTC 1 cut(s) 883
PkrI GCNGC 4 cut(s) 115, 145, 421, 520
PleI GAGTC 2 cut(s) 175, 978
PluTI GGCGCC 1 cut(s) 440
PpsI GAGTC 2 cut(s) 175, 978
Ppu21I YACGTR 1 cut(s) 903
Psp6I CCWGG 2 cut(s) 675, 868
PspGI CCWGG 2 cut(s) 675, 868
PspN4I GGNNCC 6 cut(s) 156, 189, 438, 697, 861, 881
PspPI GGNCC 4 cut(s) 187, 366, 611, 879
PstI CTGCAG 1 cut(s) 807
PsyI GACNNNGTC 1 cut(s) 883
RsaI GTAC 2 cut(s) 485, 905
RsaNI GTAC 2 cut(s) 484, 904
RseI CAYNNNNRTG 1 cut(s) 40
SalI GTCGAC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 405, 555, 855
SatI GCNGC 4 cut(s) 114, 144, 420, 519
Sau3AI GATC 2 cut(s) 916, 982
Sau96I GGNCC 4 cut(s) 187, 366, 611, 879
SchI GAGTC 2 cut(s) 176, 979
ScrFI CCNGG 5 cut(s) 370, 452, 453, 677, 870
SduI GDGCHC 3 cut(s) 159, 165, 278
SfaNI GCATC 2 cut(s) 500, 647
SfcI CTRYAG 1 cut(s) 803
SfoI GGCGCC 1 cut(s) 438
SinI GGWCC 2 cut(s) 187, 879
SmaI CCCGGG 1 cut(s) 453
SmiMI CAYNNNNRTG 1 cut(s) 40
SmlI CTYRAG 3 cut(s) 826, 854, 928
SmoI CTYRAG 3 cut(s) 826, 854, 928
SnaBI TACGTA 1 cut(s) 903
Sse9I AATT 7 cut(s) 17, 353, 552, 564, 585, 683, 769
SsiI CCGC 7 cut(s) 61, 67, 113, 144, 386, 419, 877
SspDI GGCGCC 1 cut(s) 436
SspI AATATT 1 cut(s) 753
StyD4I CCNGG 5 cut(s) 368, 450, 451, 675, 868
TaaI ACNGT 2 cut(s) 107, 483
TaiI ACGT 2 cut(s) 341, 905
TaqI TCGA 2 cut(s) 170, 546
TasI AATT 7 cut(s) 17, 353, 552, 564, 585, 683, 769
TatI WGTACW 1 cut(s) 483
TauI GCSGC 3 cut(s) 116, 146, 422
TfiI GAWTC 5 cut(s) 182, 424, 672, 765, 924
Tru1I TTAA 3 cut(s) 405, 555, 855
Tru9I TTAA 3 cut(s) 405, 555, 855
TscAI CASTG 2 cut(s) 493, 640
TseFI GTSAC 1 cut(s) 774
TseI GCWGC 1 cut(s) 518
Tsp45I GTSAC 1 cut(s) 774
TspDTI ATGAA 1 cut(s) 29
TspGWI ACGGA 2 cut(s) 293, 458
TspMI CCCGGG 1 cut(s) 451
TspRI CASTG 2 cut(s) 493, 640
Tth111I GACNNNGTC 1 cut(s) 883
Vha464I CTTAAG 1 cut(s) 854
VpaK11BI GGWCC 2 cut(s) 187, 879
XapI RAATTY 2 cut(s) 17, 683
XmaI CCCGGG 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 170
XmnI GAANNNNTTC 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.