Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003910.1

Orthogroup ID

OG0009217

Physical Location & Seq

Genomic Coordinates Reverse (-)

57010 .. 63511

Gene Structure 6502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2721 bp

atggtaccttcggggccgcccaatccaattggtggtgcccagtctgtttcaccttcgctcttgcgttcaaattctggaatgcttggaggtcaaaatggtccactaccttctcagtcagcttttccgtcgcttgtctcaccgcgtactcaattcagtaacatgaacatgcttggaaatgtagccaatgtgtcttctctccttaatcagccttttggaaatgggattccaaattcagggctttctggtcctggtagcagccatcgtggaggtattgatactggggctgagtccgatcccctctctagtgttggcaatggaatgggtttcaatgctccttcatcttataatgcatcaaacctggctaatcctggtacatctggtcaaggtcagggtcagggtcagggtcaacaattttcaaacccttctgatcaacaacagcaacaactcgagaatcagaattttcagcatagtcagcagcaaatgcaacagttctctacccctcacaacgcacagcagcagcagcaacagcaatttcagccaattcgagggagcttagctggtgttggacaagtcaagttggagccccagttgacaaatgatcaacatggacagcagcagcagcagttgcagtcttttagaggtcttggtcaagtgaaaatggaacctcaacaacttcagaacatgagaaacttgccgcctgtaaaagtggaaccccagcataatgatcagtcattgtatttgcatcaacaacagcaacagcaacagcaacagcaacaacagcagttactcaacatgtcaaggcactcttctcaagctactgccgcccatataaaccttctgcatcagcagagattcttgcagctaacacaacaacaccagcaacagcaactcttaaaagcaatgcctcagccacggccccaagtacagcagcaatttccgcaacagaatctccctatgagatctcctgcaaaaccagtgtatgaacctggaatgtgtgcacggcgcttgacgcattatatgtatcagcaacaacataggcctgaagacaataatattgaattctggagaaaatttgttgctgagtattttgtacctcatgccaagaagaaatggtgtgtttctatgtatggaagtggccggcagacaactggtgttttccctcaggatgtatggcattgtgagatatgcaatcgcaagcctgggcggggctttgaagcaactgttgaggttcttccccggctatttaaaatcaagtatgaaagtggtaccttggaggaacttctgtatgttgatatgcctcgtgagtatcataattcatctggtcagattgtgctggactatgccaaagcaatacaagaaagtgtttttgagcagcttcgtgttgttcgggatggtcaacttcgaatcgtgttctctccagacttgaagatatgctcttgggagttttgtgcaaggcgccatgaagagcttatccctcgaagattactgatacctcaggttagtcaacttggggctgcagctcaaaaataccaggctgctactcaaaatgcatcatctaatttatctattccagacatacaaagtaattgtaatatgtttgtatcgtcagctcggcagttggcaaaaaccctggaagtgccattagtaaatgatttaggctatacaaagagatacgtaaggtgtctacagatatcagaagtggttaatagtatgaaggacttgattgattacagccgagagacagggactggacccatggagagcttagccaagtttcctcgaaggacgagtacttcatctgggtttcacaatcaagcacagcagtctgatgaacaaatgcagcagcaacagcaacagcaaacggtgggccagaattcaaatgacgcaagctctgtgcaggccaatatgcaacttgctgttagtaatggacctagtggtatggctagtgtaaataacgtgaacacagcatccacatctacctctgcaagcaccattgtgggtctcctccatcaaaattccatgaattccaggcaacagagttcgatgaataatgcaaacagtccctatggaggaagttctgttcagattccatcccctggttcttctagtacaatccctcagactcaagcaaacccttctccattccagtcaccaacaccctcatcgaacaatccatcccaaacatctcatggtgccttgacagctaccaatcacatgagtgcagcaaattcaccagcaaatgtatccatgcaacagccagccctttctggtgaggctgatccaagtgattcccagagctctgtccagaaaattatacacgacatgatgatgtccaaccagcttaatggctcaggtagtatggttggtgtgggttctctgggaaacgatgtgaaaaacatgaatgggattttgtctagtagcaacaacacaggcatgaacggtggcaactgtctgtcggggaatgtcatgggcaacagtaactcaggtatggggggtggtggatttgggagtatgggtggacttggtcagcctgccatggttaatggaataagagctgcaatgggaaataattctgttatgaatggaagggttggaatggcatcaatggctcgagaacaaagtatgcatcatcaacaggatatagggagccagctacttagtgggcttggagcggttaatgggtttaataatcttcaatttgattggaaacattctccttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001666 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005515 GO:0006950 GO:0006974 GO:0006979 GO:0007275 GO:0008150 GO:0009605 GO:0009607 GO:0009617 GO:0009620 GO:0009624 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009790 GO:0009791 GO:0009793 GO:0009908 GO:0009909 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0010154 GO:0010243 GO:0010272 GO:0014070 GO:0022414 GO:0032501 GO:0032502 GO:0033554 GO:0035670 GO:0036293 GO:0042221 GO:0042493 GO:0043207 GO:0046677 GO:0046898 GO:0046982 GO:0046983 GO:0048316 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048467 GO:0048481 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0051704 GO:0051707 GO:0051716 GO:0060090 GO:0060992 GO:0061458 GO:0065007 GO:0070482 GO:0071216 GO:0071217 GO:0071496 GO:0090567 GO:0097159 GO:0097305 GO:0099402 GO:1901363 GO:1901654 GO:1901698 GO:1901700 GO:2000026 GO:2000241

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LIM_bind

Protein Analysis

906

Amino Acids

98.48

Weight (kDa)

8.83

Isoelectric Point (pI)

57.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LIM_bind	PF01803	335 - 589	1.3e-67	LIM-domain binding protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009217)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G43850 AT1G43850
fragaria_vesca	FvH4_2g14890
malus_domestica	MD05G1012000.v1.1 MD10G1012000.v1.1
prunus_persica	Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1 Prupe.8G017000_v2.0.a1
pyrus_communis	pycom05g00700 pycom10g00760
rosa_chinensis	RchiOBHm_Chr6g0277461
rosa_laevigata	RLG00000013299
rosa_multiflora	Rmu_co8465657.1_g000001 Rmu_sc0003910.1_g000012
rosa_roxburghii	Rroxscaffold_7G00191290
rosa_rugosa	Rorug06G0108400 Rorug06G0108500
rosa_samantha	Rh6AG219300 Rh6BG223200 Rh6CG225700 Rh6DG216000
rosa_wichuraiana	Rw6G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	345
Acc65I	GGTACC	2 cut(s)	4, 1265
AccB1I	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
AccB7I	CCANNNNNTGG	2 cut(s)	32, 2096
AccBSI	CCGCTC	1 cut(s)	2672
AccI	GTMKAC	1 cut(s)	1684
AccII	CGCG	1 cut(s)	142
AciI	CCGC	7 cut(s)	17, 140, 695, 822, 938, 1204, 2672
AclWI	GGATC	2 cut(s)	287, 2273
AcoI	YGGCCR	1 cut(s)	1135
AcsI	RAATTY	9 cut(s)	70, 229, 457, 1058, 1070, 1873, 2014, 2023, 2227
AcuI	CTGAAG	2 cut(s)	659, 1062
AcyI	GRCGYC	1 cut(s)	1456
AfaI	GTAC	8 cut(s)	6, 145, 373, 924, 1092, 1267, 1792, 2110
AfiI	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
AflIII	ACRYGT	1 cut(s)	792
AgsI	TTSAA	8 cut(s)	69, 328, 417, 1058, 1214, 1426, 1878, 2696
AjnI	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
AleI	CACNNNNGTG	2 cut(s)	1994, 2217
AloI	GAACNNNNNNTCC	6 cut(s)	1952, 1984, 2064, 2096, 2159, 2191
Alw21I	GWGCWC	2 cut(s)	1000, 2300
Alw26I	GTCTC	3 cut(s)	139, 1733, 2006
Alw44I	GTGCAC	1 cut(s)	996
AlwI	GGATC	2 cut(s)	287, 2273
AlwNI	CAGNNNCTG	1 cut(s)	1748
Ama87I	CYCGRG	2 cut(s)	446, 2610
AoxI	GGCC	6 cut(s)	14, 914, 1037, 1135, 1867, 1899
ApaLI	GTGCAC	1 cut(s)	996
ApoI	RAATTY	9 cut(s)	70, 229, 457, 1058, 1070, 1873, 2014, 2023, 2227
Asp700I	GAANNNNTTC	1 cut(s)	2569
Asp718I	GGTACC	2 cut(s)	4, 1265
AspLEI	GCGC	2 cut(s)	1005, 1458
AspS9I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
AsuC2I	CCSGG	1 cut(s)	1237
AsuHPI	GGTGA	5 cut(s)	42, 129, 2142, 2223, 2282
AsuII	TTCGAA	1 cut(s)	1402
AvaI	CYCGRG	2 cut(s)	446, 2610
AvaII	GGWCC	4 cut(s)	98, 245, 1751, 1928
AxyI	CCTNAGG	2 cut(s)	1161, 1494
BaeGI	GKGCMC	2 cut(s)	40, 1000
BanI	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
BanII	GRGCYC	2 cut(s)	585, 2300
BarI	GAAGNNNNNNTAC	2 cut(s)	1774, 1806
BauI	CACGAG	1 cut(s)	1299
BbsI	GAAGAC	2 cut(s)	183, 1050
Bbv12I	GWGCWC	2 cut(s)	1000, 2300
BbvCI	CCTCAGC	1 cut(s)	906
BccI	CCATC	5 cut(s)	267, 1385, 2016, 2098, 2182
BceAI	ACGGC	2 cut(s)	929, 1016
BciT130I	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
BciVI	GTATCC	1 cut(s)	2254
BclI	TGATCA	3 cut(s)	427, 598, 724
BcnI	CCSGG	1 cut(s)	1237
BcoDI	GTCTC	3 cut(s)	139, 1733, 2006
BfaI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
BfmI	CTRYAG	2 cut(s)	1515, 1685
BfoI	RGCGCY	2 cut(s)	1006, 1459
BfuI	GTATCC	1 cut(s)	2254
BglII	AGATCT	1 cut(s)	959
BlpI	GCTNAGC	2 cut(s)	553, 1765
BmcAI	AGTACT	1 cut(s)	1792
Bme18I	GGWCC	4 cut(s)	98, 245, 1751, 1928
BmeT110I	CYCGRG	2 cut(s)	446, 2610
BmgT120I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
BmrI	ACTGGG	3 cut(s)	34, 288, 580
BmsI	GCATC	7 cut(s)	359, 751, 850, 1559, 1976, 2609, 2635
BmuI	ACTGGG	3 cut(s)	34, 288, 580
BpiI	GAAGAC	2 cut(s)	183, 1050
BpmI	CTGGAG	2 cut(s)	1084, 1401
Bpu10I	CCTNAGC	2 cut(s)	906, 2350
Bpu1102I	GCTNAGC	2 cut(s)	553, 1765
Bpu14I	TTCGAA	1 cut(s)	1402
BpuEI	CTTGAG	2 cut(s)	795, 2109
BpuMI	CCSGG	1 cut(s)	1237
BsaAI	YACGTR	1 cut(s)	1675
BsaHI	GRCGYC	1 cut(s)	1456
BsaI	GGTCTC	1 cut(s)	2006
BsaJI	CCNNGG	8 cut(s)	911, 1199, 1235, 1269, 1629, 1755, 2095, 2535
BsaXI	ACNNNNNCTCC	6 cut(s)	572, 602, 933, 963, 2500, 2530
Bsc4I	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
Bse118I	RCCGGY	1 cut(s)	1137
Bse1I	ACTGG	7 cut(s)	40, 283, 586, 974, 1153, 1753, 2146
Bse21I	CCTNAGG	2 cut(s)	1161, 1494
Bse3DI	GCAATG	3 cut(s)	319, 906, 2565
BseBI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
BseDI	CCNNGG	8 cut(s)	911, 1199, 1235, 1269, 1629, 1755, 2095, 2535
BseGI	GGATG	5 cut(s)	1171, 1396, 1967, 2090, 2174
BseLI	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
BseMI	GCAATG	3 cut(s)	319, 906, 2565
BseMII	CTCAG	9 cut(s)	125, 276, 920, 1071, 1175, 1508, 2132, 2364, 2496
BseNI	ACTGG	7 cut(s)	40, 283, 586, 974, 1153, 1753, 2146
BseRI	GAGGAG	1 cut(s)	1994
BseSI	GKGCMC	2 cut(s)	40, 1000
BseYI	CCCAGC	1 cut(s)	714
BsgI	GTGCAG	2 cut(s)	1916, 2241
Bsh1236I	CGCG	1 cut(s)	142
BshFI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
BshNI	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
BsiHKAI	GWGCWC	2 cut(s)	1000, 2300
BsiHKCI	CYCGRG	2 cut(s)	446, 2610
BsiSI	CCGG	2 cut(s)	1138, 1237
BslFI	GGGAC	2 cut(s)	1759, 2046
BslI	CCNNNNNNNGG	6 cut(s)	32, 233, 545, 1205, 2069, 2096
BsmAI	GTCTC	3 cut(s)	139, 1733, 2006
BsmFI	GGGAC	2 cut(s)	1759, 2046
BsmI	GAATGC	1 cut(s)	84
BsnI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
Bso31I	GGTCTC	1 cut(s)	2006
BsoBI	CYCGRG	2 cut(s)	446, 2610
Bsp119I	TTCGAA	1 cut(s)	1402
Bsp1286I	GDGCHC	4 cut(s)	40, 585, 1000, 2300
Bsp143I	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
Bsp1720I	GCTNAGC	2 cut(s)	553, 1765
Bsp19I	CCATGG	2 cut(s)	1755, 2535
BspACI	CCGC	7 cut(s)	17, 140, 695, 822, 938, 1204, 2672
BspANI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
BspCNI	CTCAG	9 cut(s)	124, 277, 919, 1072, 1174, 1507, 2131, 2363, 2495
BspFNI	CGCG	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	1519
BspPI	GGATC	2 cut(s)	287, 2273
BspQI	GCTCTTC	1 cut(s)	1458
BspT104I	TTCGAA	1 cut(s)	1402
BspT107I	GGYRCC	5 cut(s)	4, 35, 1265, 1455, 2192
BspTNI	GGTCTC	1 cut(s)	2006
BsrBI	CCGCTC	1 cut(s)	2672
BsrDI	GCAATG	3 cut(s)	319, 906, 2565
BsrFI	RCCGGY	1 cut(s)	1137
BsrI	ACTGG	7 cut(s)	40, 283, 586, 974, 1153, 1753, 2146
BssAI	RCCGGY	1 cut(s)	1137
BssECI	CCNNGG	8 cut(s)	911, 1199, 1235, 1269, 1629, 1755, 2095, 2535
BssMI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
BssNI	GRCGYC	1 cut(s)	1456
BssSI	CACGAG	1 cut(s)	1299
BssT1I	CCWWGG	3 cut(s)	1269, 1755, 2535
Bst2BI	CACGAG	1 cut(s)	1299
Bst2UI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
Bst4CI	ACNGT	7 cut(s)	489, 1222, 1864, 2060, 2441, 2450, 2477
Bst6I	CTCTTC	2 cut(s)	811, 1458
BstACI	GRCGYC	1 cut(s)	1456
BstAPI	GCANNNNNTGC	2 cut(s)	481, 625
BstBAI	YACGTR	1 cut(s)	1675
BstBI	TTCGAA	1 cut(s)	1402
BstC8I	GCNNGC	8 cut(s)	1139, 1196, 1888, 1899, 1987, 2259, 2532, 2651
BstDSI	CCRYGG	3 cut(s)	911, 1755, 2535
BstF5I	GGATG	5 cut(s)	1171, 1396, 1967, 2090, 2174
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	1006, 1459
BstHHI	GCGC	2 cut(s)	1005, 1458
BstKTI	GATC	6 cut(s)	295, 430, 601, 727, 962, 2281
BstMAI	GTCTC	3 cut(s)	139, 1733, 2006
BstMBI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
BstNI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
BstNSI	RCATGY	2 cut(s)	169, 796
BstSFI	CTRYAG	2 cut(s)	1515, 1685
BstSLI	GKGCMC	2 cut(s)	40, 1000
BstSNI	TACGTA	1 cut(s)	1675
BstUI	CGCG	1 cut(s)	142
BstV2I	GAAGAC	2 cut(s)	183, 1050
BstX2I	RGATCY	1 cut(s)	959
BstXI	CCANNNNNNTGG	1 cut(s)	2345
BstYI	RGATCY	1 cut(s)	959
Bsu36I	CCTNAGG	2 cut(s)	1161, 1494
BsuI	GTATCC	1 cut(s)	2254
BsuRI	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
BtgI	CCRYGG	3 cut(s)	911, 1755, 2535
BtsCI	GGATG	5 cut(s)	1171, 1396, 1967, 2090, 2174
BtsIMutI	CAGTG	1 cut(s)	981
Cac8I	GCNNGC	8 cut(s)	1139, 1196, 1888, 1899, 1987, 2259, 2532, 2651
CaiI	CAGNNNCTG	1 cut(s)	1748
CfoI	GCGC	2 cut(s)	1005, 1458
Cfr10I	RCCGGY	1 cut(s)	1137
Cfr13I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
CseI	GACGC	2 cut(s)	1018, 1892
Csp6I	GTAC	8 cut(s)	5, 144, 372, 923, 1091, 1266, 1791, 2109
CviQI	GTAC	8 cut(s)	5, 144, 372, 923, 1091, 1266, 1791, 2109
DinI	GGCGCC	1 cut(s)	1457
DpnI	GATC	6 cut(s)	294, 429, 600, 726, 961, 2280
DpnII	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
DraI	TTTAAA	1 cut(s)	1246
EaeI	YGGCCR	1 cut(s)	1135
Eam1104I	CTCTTC	2 cut(s)	811, 1458
EarI	CTCTTC	2 cut(s)	811, 1458
Ecl136II	GAGCTC	1 cut(s)	2298
Eco105I	TACGTA	1 cut(s)	1675
Eco130I	CCWWGG	3 cut(s)	1269, 1755, 2535
Eco147I	AGGCCT	1 cut(s)	1039
Eco24I	GRGCYC	2 cut(s)	585, 2300
Eco31I	GGTCTC	1 cut(s)	2006
Eco32I	GATATC	1 cut(s)	1692
Eco47I	GGWCC	4 cut(s)	98, 245, 1751, 1928
Eco53kI	GAGCTC	1 cut(s)	2298
Eco57I	CTGAAG	2 cut(s)	659, 1062
Eco81I	CCTNAGG	2 cut(s)	1161, 1494
Eco88I	CYCGRG	2 cut(s)	446, 2610
EcoICRI	GAGCTC	1 cut(s)	2298
EcoRI	GAATTC	3 cut(s)	1058, 1873, 2023
EcoRII	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
EcoRV	GATATC	1 cut(s)	1692
EcoT14I	CCWWGG	3 cut(s)	1269, 1755, 2535
EcoT22I	ATGCAT	3 cut(s)	352, 1552, 2628
EcoT38I	GRGCYC	2 cut(s)	585, 2300
EgeI	GGCGCC	1 cut(s)	1457
EheI	GGCGCC	1 cut(s)	1457
ErhI	CCWWGG	3 cut(s)	1269, 1755, 2535
FalI	AAGNNNNNCTT	2 cut(s)	790, 822
FaqI	GGGAC	2 cut(s)	1759, 2046
FauI	CCCGC	1 cut(s)	1197
FbaI	TGATCA	3 cut(s)	427, 598, 724
FblI	GTMKAC	1 cut(s)	1684
FokI	GGATG	5 cut(s)	1178, 1403, 1954, 2077, 2161
FriOI	GRGCYC	2 cut(s)	585, 2300
FspBI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
GlaI	GCGC	2 cut(s)	1004, 1457
GsaI	CCCAGC	1 cut(s)	718
GsuI	CTGGAG	2 cut(s)	1084, 1401
HaeII	RGCGCY	2 cut(s)	1006, 1459
HaeIII	GGCC	6 cut(s)	16, 916, 1039, 1137, 1869, 1901
HapII	CCGG	2 cut(s)	1138, 1237
HgaI	GACGC	2 cut(s)	1018, 1892
HhaI	GCGC	2 cut(s)	1005, 1458
Hin1I	GRCGYC	1 cut(s)	1456
Hin6I	GCGC	2 cut(s)	1003, 1456
HinP1I	GCGC	2 cut(s)	1003, 1456
HincII	GTYRAC	4 cut(s)	407, 591, 1397, 1505
HindII	GTYRAC	4 cut(s)	407, 591, 1397, 1505
HinfI	GANTC	9 cut(s)	223, 287, 451, 852, 946, 1404, 2086, 2122, 2288
HpaII	CCGG	2 cut(s)	1138, 1237
HphI	GGTGA	5 cut(s)	42, 129, 2142, 2223, 2282
Hpy166II	GTNNAC	9 cut(s)	101, 407, 591, 998, 1397, 1505, 1685, 1960, 2519
Hpy188I	TCNGA	9 cut(s)	292, 427, 456, 678, 1326, 1696, 1828, 2085, 2121
Hpy8I	GTNNAC	9 cut(s)	101, 407, 591, 998, 1397, 1505, 1685, 1960, 2519
Hpy99I	CGWCG	1 cut(s)	130
HpyCH4III	ACNGT	7 cut(s)	489, 1222, 1864, 2060, 2441, 2450, 2477
HpyCH4IV	ACGT	2 cut(s)	1674, 1956
HpySE526I	ACGT	2 cut(s)	1674, 1956
Hsp92I	GRCGYC	1 cut(s)	1456
HspAI	GCGC	2 cut(s)	1003, 1456
KasI	GGCGCC	1 cut(s)	1455
KpnI	GGTACC	2 cut(s)	8, 1269
KroI	GCCGGC	1 cut(s)	1137
KroNI	GCCGGC	1 cut(s)	1139
Ksp22I	TGATCA	3 cut(s)	427, 598, 724
Kzo9I	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
LguI	GCTCTTC	1 cut(s)	1458
LmnI	GCTCC	5 cut(s)	337, 549, 580, 2646, 2669
LweI	GCATC	7 cut(s)	359, 751, 850, 1559, 1976, 2609, 2635
MaeI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
MaeII	ACGT	2 cut(s)	1674, 1956
MaeIII	GTNAC	4 cut(s)	155, 783, 2148, 2477
MalI	GATC	6 cut(s)	294, 429, 600, 726, 961, 2280
MbiI	CCGCTC	1 cut(s)	2672
MboI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
MfeI	CAATTG	1 cut(s)	27
MflI	RGATCY	1 cut(s)	959
MhlI	GDGCHC	4 cut(s)	40, 585, 1000, 2300
Mly113I	GGCGCC	1 cut(s)	1456
MlyI	GAGTC	2 cut(s)	296, 2116
MmeI	TCCRAC	4 cut(s)	544, 558, 2358, 2572
Mph1103I	ATGCAT	3 cut(s)	352, 1552, 2628
MroNI	GCCGGC	1 cut(s)	1137
MroXI	GAANNNNTTC	1 cut(s)	2569
MseI	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
MslI	CAYNNNNRTG	5 cut(s)	164, 1994, 2217, 2327, 2432
MspI	CCGG	2 cut(s)	1138, 1237
MunI	CAATTG	1 cut(s)	27
Mva1269I	GAATGC	1 cut(s)	84
MvaI	CCWGG	9 cut(s)	249, 359, 369, 987, 1200, 1532, 1631, 2029, 2097
MvnI	CGCG	1 cut(s)	142
NaeI	GCCGGC	1 cut(s)	1139
NarI	GGCGCC	1 cut(s)	1456
NciI	CCSGG	1 cut(s)	1237
NcoI	CCATGG	2 cut(s)	1755, 2535
NdeII	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
NgoMIV	GCCGGC	1 cut(s)	1137
NmeAIII	GCCGAG	2 cut(s)	1591, 1760
NmuCI	GTSAC	1 cut(s)	2148
NsiI	ATGCAT	3 cut(s)	352, 1552, 2628
NspI	RCATGY	2 cut(s)	169, 796
NspV	TTCGAA	1 cut(s)	1402
OliI	CACNNNNGTG	2 cut(s)	1994, 2217
PaeR7I	CTCGAG	2 cut(s)	446, 2610
PceI	AGGCCT	1 cut(s)	1039
PciI	ACATGT	1 cut(s)	792
PciSI	GCTCTTC	1 cut(s)	1458
PctI	GAATGC	1 cut(s)	84
PdiI	GCCGGC	1 cut(s)	1139
PdmI	GAANNNNTTC	1 cut(s)	2569
PfeI	GAWTC	7 cut(s)	223, 451, 852, 946, 1404, 2086, 2288
PflFI	GACNNNGTC	1 cut(s)	2523
PflMI	CCANNNNNTGG	2 cut(s)	32, 2096
PleI	GAGTC	2 cut(s)	295, 2116
PluTI	GGCGCC	1 cut(s)	1459
PpsI	GAGTC	2 cut(s)	295, 2116
Ppu21I	YACGTR	1 cut(s)	1675
PscI	ACATGT	1 cut(s)	792
PsiI	TTATAA	1 cut(s)	345
Psp124BI	GAGCTC	1 cut(s)	2300
Psp6I	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
PspFI	CCCAGC	1 cut(s)	714
PspGI	CCWGG	9 cut(s)	247, 357, 367, 985, 1198, 1530, 1629, 2027, 2095
PspPI	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
PstI	CTGCAG	1 cut(s)	1519
PstNI	CAGNNNCTG	1 cut(s)	1748
PsuI	RGATCY	1 cut(s)	959
PsyI	GACNNNGTC	1 cut(s)	2523
RsaI	GTAC	8 cut(s)	6, 145, 373, 924, 1092, 1267, 1792, 2110
RsaNI	GTAC	8 cut(s)	5, 144, 372, 923, 1091, 1266, 1791, 2109
RseI	CAYNNNNRTG	5 cut(s)	164, 1994, 2217, 2327, 2432
SacI	GAGCTC	1 cut(s)	2300
SapI	GCTCTTC	1 cut(s)	1458
SaqAI	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
Sau3AI	GATC	6 cut(s)	292, 427, 598, 724, 959, 2278
Sau96I	GGNCC	7 cut(s)	14, 98, 245, 915, 1751, 1867, 1928
ScaI	AGTACT	1 cut(s)	1792
SchI	GAGTC	2 cut(s)	296, 2116
SduI	GDGCHC	4 cut(s)	40, 585, 1000, 2300
SfaNI	GCATC	7 cut(s)	359, 751, 850, 1559, 1976, 2609, 2635
SfcI	CTRYAG	2 cut(s)	1515, 1685
SfoI	GGCGCC	1 cut(s)	1457
Sfr274I	CTCGAG	2 cut(s)	446, 2610
SfuI	TTCGAA	1 cut(s)	1402
SinI	GGWCC	4 cut(s)	98, 245, 1751, 1928
SlaI	CTCGAG	2 cut(s)	446, 2610
SmiMI	CAYNNNNRTG	5 cut(s)	164, 1994, 2217, 2327, 2432
SmlI	CTYRAG	4 cut(s)	446, 810, 2124, 2610
SmoI	CTYRAG	4 cut(s)	446, 810, 2124, 2610
SnaBI	TACGTA	1 cut(s)	1675
SseBI	AGGCCT	1 cut(s)	1039
SsiI	CCGC	7 cut(s)	17, 140, 695, 822, 938, 1204, 2672
SspDI	GGCGCC	1 cut(s)	1455
SspI	AATATT	1 cut(s)	1054
SspMI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
SstI	GAGCTC	1 cut(s)	2300
StuI	AGGCCT	1 cut(s)	1039
StyI	CCWWGG	3 cut(s)	1269, 1755, 2535
TaaI	ACNGT	7 cut(s)	489, 1222, 1864, 2060, 2441, 2450, 2477
TaiI	ACGT	2 cut(s)	1677, 1959
TaqI	TCGA	8 cut(s)	447, 544, 1402, 1477, 1780, 2042, 2165, 2611
TatI	WGTACW	3 cut(s)	922, 1790, 2108
TauI	GCSGC	3 cut(s)	19, 697, 824
TfiI	GAWTC	7 cut(s)	223, 451, 852, 946, 1404, 2086, 2288
Tru1I	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
Tru9I	TTAA	9 cut(s)	201, 893, 1245, 1704, 2343, 2541, 2676, 2685, 2719
TscAI	CASTG	1 cut(s)	981
TseFI	GTSAC	1 cut(s)	2148
Tsp45I	GTSAC	1 cut(s)	2148
TspGWI	ACGGA	1 cut(s)	114
TspRI	CASTG	1 cut(s)	981
Tth111I	GACNNNGTC	1 cut(s)	2523
Van91I	CCANNNNNTGG	2 cut(s)	32, 2096
VneI	GTGCAC	1 cut(s)	996
VpaK11BI	GGWCC	4 cut(s)	98, 245, 1751, 1928
XapI	RAATTY	9 cut(s)	70, 229, 457, 1058, 1070, 1873, 2014, 2023, 2227
XceI	RCATGY	2 cut(s)	169, 796
XcmI	CCANNNNNNNNNTGG	2 cut(s)	2186, 2657
XhoI	CTCGAG	2 cut(s)	446, 2610
XmiI	GTMKAC	1 cut(s)	1684
XmnI	GAANNNNTTC	1 cut(s)	2569
XspI	CTAG	5 cut(s)	303, 1932, 1944, 2106, 2415
ZrmI	AGTACT	1 cut(s)	1792
Zsp2I	ATGCAT	3 cut(s)	352, 1552, 2628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.