Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004465.1

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Reverse (-)

147557 .. 149318

Gene Structure 1762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004465.1_g000035.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

atgcttgcaatctggtatggtaacgaagcagatgaggccttttccgatgcgtggaattctgatgcagctagtgttgtcgattacacaccacttggggtgcttggtccaaatgcatatcttgcaccaaggttgtggtatgttcgcgttatcattctcggggcagaaatcctgtttccagaagaaaacaatcatttccgcgatgcatatgccaaggtgtggctgaaagaccagggcaaagacgaagtcattggtacgaagtcaataccgctggactctatatactttcatttaaatgattgtgatgattgtctaatgccttcccagtgtggggggaggaggaagagggaaaaggatggaggaaatgttggtgggatgaactggtggagtttcccgaccgttgatgttcttgaaatctcacccagattcaacaaatctaggccatccatttcggctccattggccccatcttcttccgggaagaagaagaagaagatggagaaactagcggtggtggagtcgaagctggcagagttgccgccaaagaaggaggattcgaagtgtgggctgatgctgaagttggactacgacgacgttttgagtgtttggtccaacaaagtgtcgccgttttcggaggagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

213

Amino Acids

23.83

Weight (kDa)

5.35

Isoelectric Point (pI)

48.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	216
AccII	CGCG	2 cut(s)	144, 198
AciI	CCGC	4 cut(s)	196, 266, 506, 536
AcsI	RAATTY	1 cut(s)	55
AcuI	CTGAAG	1 cut(s)	593
AfaI	GTAC	1 cut(s)	253
AfiI	CCNNNNNNNGG	4 cut(s)	51, 216, 327, 328
AgsI	TTSAA	2 cut(s)	410, 427
AjnI	CCWGG	1 cut(s)	228
AluBI	AGCT	2 cut(s)	68, 523
AluI	AGCT	2 cut(s)	68, 523
Ama87I	CYCGRG	1 cut(s)	155
AoxI	GGCC	3 cut(s)	36, 437, 459
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	55
ArsI	GACNNNNNNTTYG	2 cut(s)	228, 260
AspS9I	GGNCC	3 cut(s)	104, 460, 606
AsuC2I	CCSGG	1 cut(s)	475
AsuHPI	GGTGA	1 cut(s)	408
AsuII	TTCGAA	1 cut(s)	554
AvaI	CYCGRG	1 cut(s)	155
AvaII	GGWCC	2 cut(s)	104, 606
BarI	GAAGNNNNNNTAC	2 cut(s)	566, 598
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	4 cut(s)	347, 448, 472, 487
BceAI	ACGGC	1 cut(s)	607
BcgI	CGANNNNNNTGC	2 cut(s)	188, 222
BciT130I	CCWGG	1 cut(s)	230
BcnI	CCSGG	1 cut(s)	475
BfaI	CTAG	3 cut(s)	69, 435, 503
BisI	GCNGC	2 cut(s)	66, 536
BlsI	GCNGC	2 cut(s)	67, 537
Bme1390I	CCNGG	2 cut(s)	230, 475
Bme18I	GGWCC	2 cut(s)	104, 606
BmeT110I	CYCGRG	1 cut(s)	155
BmgT120I	GGNCC	3 cut(s)	104, 460, 606
BmiI	GGNNCC	2 cut(s)	453, 462
BmrFI	CCNGG	2 cut(s)	230, 475
BmrI	ACTGGG	1 cut(s)	316
BmsI	GCATC	4 cut(s)	37, 52, 190, 558
BmuI	ACTGGG	1 cut(s)	316
Bpu14I	TTCGAA	1 cut(s)	554
BpuMI	CCSGG	1 cut(s)	475
BsaJI	CCNNGG	3 cut(s)	125, 210, 229
BsaXI	ACNNNNNCTCC	3 cut(s)	348, 378, 623
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 216, 327, 328
Bse1I	ACTGG	2 cut(s)	322, 383
BseBI	CCWGG	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	125, 210, 229
BseGI	GGATG	3 cut(s)	358, 378, 440
BseLI	CCNNNNNNNGG	4 cut(s)	51, 216, 327, 328
BseNI	ACTGG	2 cut(s)	322, 383
BseRI	GAGGAG	1 cut(s)	349
BseXI	GCAGC	1 cut(s)	77
Bsh1236I	CGCG	2 cut(s)	144, 198
Bsh1285I	CGRYCG	1 cut(s)	396
BshFI	GGCC	3 cut(s)	38, 439, 461
BsiEI	CGRYCG	1 cut(s)	396
BsiHKCI	CYCGRG	1 cut(s)	155
BsiSI	CCGG	1 cut(s)	474
BslI	CCNNNNNNNGG	4 cut(s)	51, 216, 327, 328
BsnI	GGCC	3 cut(s)	38, 439, 461
BsoBI	CYCGRG	1 cut(s)	155
Bsp119I	TTCGAA	1 cut(s)	554
BspACI	CCGC	4 cut(s)	196, 266, 506, 536
BspANI	GGCC	3 cut(s)	38, 439, 461
BspFNI	CGCG	2 cut(s)	144, 198
BspLI	GGNNCC	2 cut(s)	453, 462
BspT104I	TTCGAA	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	322, 383
BssECI	CCNNGG	3 cut(s)	125, 210, 229
BssT1I	CCWWGG	2 cut(s)	125, 210
Bst2UI	CCWGG	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	335
BstAPI	GCANNNNNTGC	1 cut(s)	119
BstBI	TTCGAA	1 cut(s)	554
BstC8I	GCNNGC	2 cut(s)	6, 525
BstF5I	GGATG	3 cut(s)	358, 378, 440
BstFNI	CGCG	2 cut(s)	144, 198
BstMCI	CGRYCG	1 cut(s)	396
BstMWI	GCNNNNNNNGC	3 cut(s)	35, 119, 458
BstNI	CCWGG	1 cut(s)	230
BstSCI	CCNGG	2 cut(s)	228, 473
BstUI	CGCG	2 cut(s)	144, 198
BstV1I	GCAGC	1 cut(s)	77
BstXI	CCANNNNNNTGG	1 cut(s)	132
BsuRI	GGCC	3 cut(s)	38, 439, 461
BtgZI	GCGATG	1 cut(s)	213
BtsCI	GGATG	3 cut(s)	358, 378, 440
BtsIMutI	CAGTG	1 cut(s)	329
Cac8I	GCNNGC	2 cut(s)	6, 525
Cfr13I	GGNCC	3 cut(s)	104, 460, 606
Csp6I	GTAC	1 cut(s)	252
CviJI	RGCY	8 cut(s)	38, 68, 220, 439, 452, 461, 523, 565
CviKI_1	RGCY	8 cut(s)	38, 68, 220, 439, 452, 461, 523, 565
CviQI	GTAC	1 cut(s)	252
DraI	TTTAAA	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	335
EarI	CTCTTC	1 cut(s)	335
Eco130I	CCWWGG	2 cut(s)	125, 210
Eco147I	AGGCCT	1 cut(s)	38
Eco47I	GGWCC	2 cut(s)	104, 606
Eco57I	CTGAAG	1 cut(s)	593
Eco88I	CYCGRG	1 cut(s)	155
EcoRI	GAATTC	1 cut(s)	55
EcoRII	CCWGG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	125, 210
EcoT22I	ATGCAT	2 cut(s)	115, 205
ErhI	CCWWGG	2 cut(s)	125, 210
FaiI	YATR	7 cut(s)	18, 115, 138, 205, 207, 278, 280
FauNDI	CATATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	66, 536
FokI	GGATG	3 cut(s)	365, 385, 427
Fsp4HI	GCNGC	2 cut(s)	66, 536
FspBI	CTAG	3 cut(s)	69, 435, 503
GluI	GCNGC	2 cut(s)	66, 536
HaeIII	GGCC	3 cut(s)	38, 439, 461
HapII	CCGG	1 cut(s)	474
HinfI	GANTC	4 cut(s)	272, 423, 515, 551
HpaII	CCGG	1 cut(s)	474
HphI	GGTGA	1 cut(s)	408
Hpy188I	TCNGA	3 cut(s)	46, 61, 631
Hpy188III	TCNNGA	3 cut(s)	176, 391, 407
Hpy99I	CGWCG	2 cut(s)	590, 593
HpyAV	CCTTC	2 cut(s)	327, 538
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	1 cut(s)	591
HpyCH4V	TGCA	5 cut(s)	8, 65, 113, 122, 203
HpyF10VI	GCNNNNNNNGC	3 cut(s)	35, 119, 458
HpySE526I	ACGT	1 cut(s)	591
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	4 cut(s)	37, 52, 190, 558
MaeI	CTAG	3 cut(s)	69, 435, 503
MaeII	ACGT	1 cut(s)	591
MaeIII	GTNAC	1 cut(s)	20
MboII	GAAGA	9 cut(s)	191, 352, 459, 462, 490, 493, 496, 499, 502
MluCI	AATT	1 cut(s)	55
MlyI	GAGTC	2 cut(s)	266, 524
MmeI	TCCRAC	2 cut(s)	558, 633
MnlI	CCTC	7 cut(s)	28, 327, 330, 336, 350, 541, 625
Mph1103I	ATGCAT	2 cut(s)	115, 205
MseI	TTAA	1 cut(s)	290
MslI	CAYNNNNRTG	1 cut(s)	291
MspA1I	CMGCKG	1 cut(s)	268
MspI	CCGG	1 cut(s)	474
MspR9I	CCNGG	2 cut(s)	230, 475
MvaI	CCWGG	1 cut(s)	230
MvnI	CGCG	2 cut(s)	144, 198
MwoI	GCNNNNNNNGC	3 cut(s)	35, 119, 458
NciI	CCSGG	1 cut(s)	475
NdeI	CATATG	1 cut(s)	205
NlaIV	GGNNCC	2 cut(s)	453, 462
NsiI	ATGCAT	2 cut(s)	115, 205
NspV	TTCGAA	1 cut(s)	554
PceI	AGGCCT	1 cut(s)	38
PfeI	GAWTC	2 cut(s)	423, 551
PflFI	GACNNNGTC	1 cut(s)	242
PflMI	CCANNNNNTGG	1 cut(s)	216
PfoI	TCCNGGA	1 cut(s)	473
PkrI	GCNGC	2 cut(s)	67, 537
PleI	GAGTC	2 cut(s)	266, 523
PpsI	GAGTC	2 cut(s)	266, 523
Psp6I	CCWGG	1 cut(s)	228
PspGI	CCWGG	1 cut(s)	228
PspN4I	GGNNCC	2 cut(s)	453, 462
PspPI	GGNCC	3 cut(s)	104, 460, 606
PsyI	GACNNNGTC	1 cut(s)	242
RsaI	GTAC	1 cut(s)	253
RsaNI	GTAC	1 cut(s)	252
RseI	CAYNNNNRTG	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	2 cut(s)	66, 536
Sau96I	GGNCC	3 cut(s)	104, 460, 606
SchI	GAGTC	2 cut(s)	266, 524
ScrFI	CCNGG	2 cut(s)	230, 475
SetI	ASST	5 cut(s)	70, 131, 216, 525, 594
SfaNI	GCATC	4 cut(s)	37, 52, 190, 558
SfuI	TTCGAA	1 cut(s)	554
SinI	GGWCC	2 cut(s)	104, 606
SmiI	ATTTAAAT	1 cut(s)	291
SmiMI	CAYNNNNRTG	1 cut(s)	291
Sse9I	AATT	1 cut(s)	55
SseBI	AGGCCT	1 cut(s)	38
SsiI	CCGC	4 cut(s)	196, 266, 506, 536
SspMI	CTAG	3 cut(s)	69, 435, 503
StuI	AGGCCT	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	228, 473
StyI	CCWWGG	2 cut(s)	125, 210
SwaI	ATTTAAAT	1 cut(s)	291
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	1 cut(s)	594
TaqI	TCGA	3 cut(s)	78, 518, 554
TasI	AATT	1 cut(s)	55
TauI	GCSGC	1 cut(s)	538
TfiI	GAWTC	2 cut(s)	423, 551
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	1 cut(s)	329
TseI	GCWGC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	275, 389
TspRI	CASTG	1 cut(s)	329
Tth111I	GACNNNGTC	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	216
VpaK11BI	GGWCC	2 cut(s)	104, 606
XapI	RAATTY	1 cut(s)	55
XspI	CTAG	3 cut(s)	69, 435, 503
Zsp2I	ATGCAT	2 cut(s)	115, 205

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.