Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Forward (+)

2068839 .. 2076380

Gene Structure 7542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG013300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGCACATCCGACTCTTCTCAAGCGCACTGAAGCCACATCGCCGCCGCCTCACCTACACCCAACACTGGCGCACGTTGATTCTGTCACCTTGTCGAAACAGGTCGGAAAATTAACCTGGGTACCTGACCACTTTGTTATAATGGCTAATGGGATTATAAGTAGTGGGGGGAGGAGGAAGAGGGAAAAGGATGGAGGAAATGTTGGTGGGATGAACTGGTGGAGTTTCCCGACCGTTGATGTTCTTGAAATCTCACCTAGATTCAACAAATTTCGGCCATCCATTTCGGCTCTGTTGGCCCCATCTTCTTCCGGGAAGAAGAAGAAGAAGATGGAGAAACTAGCGGTGGTGGAGTTGAAGCTGGCGGAGTTGCCGCCAAAGGAGGAGGATTCGGAGTGTGGGCTGATGCTGAAGTTGGACTACGACGACGTTTTGAGTGTTTGGTCCAACAAAGTGTCGCCGTTTTCGGAGGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

159

Amino Acids

17.62

Weight (kDa)

8.99

Isoelectric Point (pI)

53.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	140, 158
Acc65I	GGTACC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	121
AciI	CCGC	5 cut(s)	44, 47, 344, 365, 374
AcoI	YGGCCR	1 cut(s)	275
AcsI	RAATTY	1 cut(s)	269
AcuI	CTGAAG	2 cut(s)	51, 431
AfaI	GTAC	1 cut(s)	123
AfiI	CCNNNNNNNGG	1 cut(s)	67
AgsI	TTSAA	3 cut(s)	248, 265, 358
AjnI	CCWGG	1 cut(s)	116
AluBI	AGCT	1 cut(s)	361
AluI	AGCT	1 cut(s)	361
AoxI	GGCC	2 cut(s)	275, 297
ApoI	RAATTY	1 cut(s)	269
Asp718I	GGTACC	1 cut(s)	121
AspLEI	GCGC	2 cut(s)	27, 73
AspS9I	GGNCC	2 cut(s)	298, 444
AsuC2I	CCSGG	1 cut(s)	313
AsuHPI	GGTGA	3 cut(s)	44, 79, 246
AvaII	GGWCC	1 cut(s)	444
BaeI	ACNNNNGTAYC	2 cut(s)	105, 138
BanI	GGYRCC	1 cut(s)	121
BarI	GAAGNNNNNNTAC	2 cut(s)	404, 436
BccI	CCATC	4 cut(s)	185, 286, 310, 325
BceAI	ACGGC	1 cut(s)	445
BciT130I	CCWGG	1 cut(s)	118
BcnI	CCSGG	1 cut(s)	313
BfaI	CTAG	2 cut(s)	258, 341
BisI	GCNGC	3 cut(s)	44, 47, 374
BlsI	GCNGC	3 cut(s)	45, 48, 375
Bme1390I	CCNGG	2 cut(s)	118, 313
Bme18I	GGWCC	1 cut(s)	444
BmgT120I	GGNCC	2 cut(s)	298, 444
BmiI	GGNNCC	2 cut(s)	123, 300
BmrFI	CCNGG	2 cut(s)	118, 313
BmsI	GCATC	1 cut(s)	396
BpuEI	CTTGAG	1 cut(s)	5
BpuMI	CCSGG	1 cut(s)	313
BsaJI	CCNNGG	1 cut(s)	117
BsaXI	ACNNNNNCTCC	3 cut(s)	186, 216, 461
Bsc4I	CCNNNNNNNGG	1 cut(s)	67
Bse1I	ACTGG	2 cut(s)	72, 221
BseBI	CCWGG	1 cut(s)	118
BseDI	CCNNGG	1 cut(s)	117
BseGI	GGATG	4 cut(s)	7, 196, 216, 278
BseLI	CCNNNNNNNGG	1 cut(s)	67
BseNI	ACTGG	2 cut(s)	72, 221
BseRI	GAGGAG	2 cut(s)	187, 398
Bsh1285I	CGRYCG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	277, 299
BshNI	GGYRCC	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	234
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	67
BsnI	GGCC	2 cut(s)	277, 299
BspACI	CCGC	5 cut(s)	44, 47, 344, 365, 374
BspANI	GGCC	2 cut(s)	277, 299
BspLI	GGNNCC	2 cut(s)	123, 300
BspT107I	GGYRCC	1 cut(s)	121
BsrI	ACTGG	2 cut(s)	72, 221
BssECI	CCNNGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	118
Bst4CI	ACNGT	1 cut(s)	235
Bst6I	CTCTTC	2 cut(s)	21, 173
BstC8I	GCNNGC	1 cut(s)	363
BstF5I	GGATG	4 cut(s)	7, 196, 216, 278
BstHHI	GCGC	2 cut(s)	27, 73
BstMCI	CGRYCG	1 cut(s)	234
BstMWI	GCNNNNNNNGC	1 cut(s)	296
BstNI	CCWGG	1 cut(s)	118
BstSCI	CCNGG	2 cut(s)	116, 311
BsuRI	GGCC	2 cut(s)	277, 299
BtgZI	GCGATG	1 cut(s)	24
BtsCI	GGATG	4 cut(s)	7, 196, 216, 278
BtsIMutI	CAGTG	2 cut(s)	27, 65
Cac8I	GCNNGC	1 cut(s)	363
CfoI	GCGC	2 cut(s)	27, 73
Cfr13I	GGNCC	2 cut(s)	298, 444
Csp6I	GTAC	1 cut(s)	122
CviJI	RGCY	7 cut(s)	35, 146, 277, 290, 299, 361, 403
CviKI_1	RGCY	7 cut(s)	35, 146, 277, 290, 299, 361, 403
CviQI	GTAC	1 cut(s)	122
EaeI	YGGCCR	1 cut(s)	275
Eam1104I	CTCTTC	2 cut(s)	21, 173
EarI	CTCTTC	2 cut(s)	21, 173
EciI	GGCGGA	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	444
Eco57I	CTGAAG	2 cut(s)	51, 431
EcoRII	CCWGG	1 cut(s)	116
FaiI	YATR	2 cut(s)	140, 158
Fnu4HI	GCNGC	3 cut(s)	44, 47, 374
FokI	GGATG	3 cut(s)	203, 223, 265
Fsp4HI	GCNGC	3 cut(s)	44, 47, 374
FspBI	CTAG	2 cut(s)	258, 341
GlaI	GCGC	2 cut(s)	26, 72
GluI	GCNGC	3 cut(s)	44, 47, 374
HaeIII	GGCC	2 cut(s)	277, 299
HapII	CCGG	1 cut(s)	312
HhaI	GCGC	2 cut(s)	27, 73
Hin6I	GCGC	2 cut(s)	25, 71
HinP1I	GCGC	2 cut(s)	25, 71
HinfI	GANTC	4 cut(s)	13, 80, 261, 389
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	3 cut(s)	44, 79, 246
Hpy188I	TCNGA	4 cut(s)	12, 107, 394, 469
Hpy188III	TCNNGA	2 cut(s)	229, 245
Hpy99I	CGWCG	2 cut(s)	428, 431
HpyCH4III	ACNGT	1 cut(s)	235
HpyCH4IV	ACGT	2 cut(s)	75, 429
HpyF10VI	GCNNNNNNNGC	1 cut(s)	296
HpySE526I	ACGT	2 cut(s)	75, 429
HspAI	GCGC	2 cut(s)	25, 71
KpnI	GGTACC	1 cut(s)	125
LpnPI	CCDG	8 cut(s)	53, 86, 103, 130, 138, 202, 325, 347
LweI	GCATC	1 cut(s)	396
MaeI	CTAG	2 cut(s)	258, 341
MaeII	ACGT	2 cut(s)	75, 429
MaeIII	GTNAC	1 cut(s)	85
MboII	GAAGA	9 cut(s)	8, 190, 297, 300, 328, 331, 334, 337, 340
MluCI	AATT	2 cut(s)	110, 269
MlyI	GAGTC	1 cut(s)	7
MmeI	TCCRAC	4 cut(s)	35, 85, 396, 471
MnlI	CCTC	8 cut(s)	60, 165, 168, 174, 188, 376, 379, 463
MseI	TTAA	1 cut(s)	113
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	2 cut(s)	118, 313
MvaI	CCWGG	1 cut(s)	118
MwoI	GCNNNNNNNGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	313
NlaIV	GGNNCC	2 cut(s)	123, 300
NmuCI	GTSAC	1 cut(s)	85
PfeI	GAWTC	3 cut(s)	80, 261, 389
PfoI	TCCNGGA	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	45, 48, 375
PleI	GAGTC	1 cut(s)	7
PpsI	GAGTC	1 cut(s)	7
PsiI	TTATAA	2 cut(s)	140, 158
Psp6I	CCWGG	1 cut(s)	116
PspGI	CCWGG	1 cut(s)	116
PspN4I	GGNNCC	2 cut(s)	123, 300
PspPI	GGNCC	2 cut(s)	298, 444
RsaI	GTAC	1 cut(s)	123
RsaNI	GTAC	1 cut(s)	122
SaqAI	TTAA	1 cut(s)	113
SatI	GCNGC	3 cut(s)	44, 47, 374
Sau96I	GGNCC	2 cut(s)	298, 444
SchI	GAGTC	1 cut(s)	7
ScrFI	CCNGG	2 cut(s)	118, 313
SetI	ASST	9 cut(s)	57, 78, 92, 105, 119, 127, 259, 363, 432
SfaNI	GCATC	1 cut(s)	396
SinI	GGWCC	1 cut(s)	444
SmlI	CTYRAG	1 cut(s)	20
SmoI	CTYRAG	1 cut(s)	20
Sse9I	AATT	2 cut(s)	110, 269
SsiI	CCGC	5 cut(s)	44, 47, 344, 365, 374
SspMI	CTAG	2 cut(s)	258, 341
StyD4I	CCNGG	2 cut(s)	116, 311
TaaI	ACNGT	1 cut(s)	235
TaiI	ACGT	2 cut(s)	78, 432
TaqI	TCGA	1 cut(s)	95
TasI	AATT	2 cut(s)	110, 269
TauI	GCSGC	3 cut(s)	46, 49, 376
TfiI	GAWTC	3 cut(s)	80, 261, 389
Tru1I	TTAA	1 cut(s)	113
Tru9I	TTAA	1 cut(s)	113
TscAI	CASTG	2 cut(s)	34, 72
TseFI	GTSAC	1 cut(s)	85
Tsp45I	GTSAC	1 cut(s)	85
TspDTI	ATGAA	1 cut(s)	227
TspRI	CASTG	2 cut(s)	34, 72
VpaK11BI	GGWCC	1 cut(s)	444
XapI	RAATTY	1 cut(s)	269
XspI	CTAG	2 cut(s)	258, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.