Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Forward (+)

58459150 .. 58459545

Gene Structure 396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG423000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 396 bp

ATGGTGGAGTCAAAGCTGGCTGAGTTGCAGCCAAAGGAGAAGAGTTCGAAGGAGGAGGATTCGGAGTGTGGGCTAATGCCCAAGCTGGACTACGACGACGTTTTGAGTGCTTGGTCCGACAAAGTGTCGCCGTTTCCAGAGGAGTTGCAGGACGGCGCTGATGGAAACAATATCTATGTATGTTTCCTGTATGTTTCTCATCTCTGGAGGGATTGGAGCGAGGTGGCGGCGGTGGTGGAGGTGAGGGAGGAGTCGGGAAGATGGCGTAGAAAACGGTGTCGTCTGGGAGGCGGGAATTTTTGTGGGAGAAGATGGAGGAGGGGGATGGGTCCAGGTTTAGAGGTGCCGCCATGGTTTTTGCTCAGTCGGAGGAGGTCTCGATTCTGCTGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

131

Amino Acids

15.18

Weight (kDa)

7.57

Isoelectric Point (pI)

93.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	343
AciI	CCGC	5 cut(s)	227, 230, 291, 347, 390
AcsI	RAATTY	1 cut(s)	295
AhdI	GACNNNNNGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	331
AluBI	AGCT	2 cut(s)	16, 85
AluI	AGCT	2 cut(s)	16, 85
Alw26I	GTCTC	1 cut(s)	381
ApeKI	GCWGC	2 cut(s)	28, 387
ApoI	RAATTY	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	158
AspS9I	GGNCC	2 cut(s)	114, 329
AsuHPI	GGTGA	1 cut(s)	253
AsuII	TTCGAA	1 cut(s)	47
AvaII	GGWCC	2 cut(s)	114, 329
BanI	GGYRCC	1 cut(s)	343
BbvI	GCAGC	2 cut(s)	40, 374
BccI	CCATC	4 cut(s)	155, 255, 306, 319
BceAI	ACGGC	2 cut(s)	115, 169
BcgI	CGANNNNNNTGC	1 cut(s)	369
BciT130I	CCWGG	1 cut(s)	333
BcoDI	GTCTC	1 cut(s)	381
BfoI	RGCGCY	1 cut(s)	159
BisI	GCNGC	5 cut(s)	29, 228, 347, 388, 391
BlsI	GCNGC	5 cut(s)	30, 229, 348, 389, 392
Bme1390I	CCNGG	1 cut(s)	333
Bme18I	GGWCC	2 cut(s)	114, 329
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmgT120I	GGNCC	2 cut(s)	114, 329
BmiI	GGNNCC	2 cut(s)	330, 345
BmrFI	CCNGG	1 cut(s)	333
BplI	GAGNNNNNCTC	2 cut(s)	361, 393
BpmI	CTGGAG	1 cut(s)	226
Bpu14I	TTCGAA	1 cut(s)	47
BsaI	GGTCTC	1 cut(s)	381
BsaJI	CCNNGG	1 cut(s)	350
BseBI	CCWGG	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	350
BseGI	GGATG	1 cut(s)	330
BseMII	CTCAG	2 cut(s)	12, 376
BseRI	GAGGAG	5 cut(s)	68, 155, 263, 331, 385
BseXI	GCAGC	2 cut(s)	40, 374
BshNI	GGYRCC	1 cut(s)	343
BsmAI	GTCTC	1 cut(s)	381
Bso31I	GGTCTC	1 cut(s)	381
Bsp119I	TTCGAA	1 cut(s)	47
Bsp19I	CCATGG	1 cut(s)	350
BspACI	CCGC	5 cut(s)	227, 230, 291, 347, 390
BspCNI	CTCAG	2 cut(s)	13, 375
BspLI	GGNNCC	2 cut(s)	330, 345
BspT104I	TTCGAA	1 cut(s)	47
BspT107I	GGYRCC	1 cut(s)	343
BspTNI	GGTCTC	1 cut(s)	381
BssECI	CCNNGG	1 cut(s)	350
BssT1I	CCWWGG	1 cut(s)	350
Bst2UI	CCWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	276
Bst6I	CTCTTC	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	21, 362
BstDSI	CCRYGG	1 cut(s)	350
BstF5I	GGATG	1 cut(s)	330
BstH2I	RGCGCY	1 cut(s)	159
BstHHI	GCGC	1 cut(s)	158
BstMAI	GTCTC	1 cut(s)	381
BstNI	CCWGG	1 cut(s)	333
BstSCI	CCNGG	1 cut(s)	331
BstV1I	GCAGC	2 cut(s)	40, 374
BtgI	CCRYGG	1 cut(s)	350
BtsCI	GGATG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	18
CfoI	GCGC	1 cut(s)	158
Cfr13I	GGNCC	2 cut(s)	114, 329
CviAII	CATG	1 cut(s)	351
CviJI	RGCY	6 cut(s)	16, 20, 31, 73, 85, 393
CviKI_1	RGCY	6 cut(s)	16, 20, 31, 73, 85, 393
DdeI	CTNAG	2 cut(s)	21, 362
DriI	GACNNNNNGTC	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	35
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EarI	CTCTTC	1 cut(s)	35
Eco130I	CCWWGG	1 cut(s)	350
Eco31I	GGTCTC	1 cut(s)	381
Eco47I	GGWCC	2 cut(s)	114, 329
EcoRII	CCWGG	1 cut(s)	331
EcoT14I	CCWWGG	1 cut(s)	350
ErhI	CCWWGG	1 cut(s)	350
FaeI	CATG	1 cut(s)	354
FaiI	YATR	4 cut(s)	177, 181, 192, 352
FatI	CATG	1 cut(s)	350
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	5 cut(s)	29, 228, 347, 388, 391
FokI	GGATG	1 cut(s)	337
Fsp4HI	GCNGC	5 cut(s)	29, 228, 347, 388, 391
GlaI	GCGC	1 cut(s)	157
GluI	GCNGC	5 cut(s)	29, 228, 347, 388, 391
GsuI	CTGGAG	1 cut(s)	226
HaeII	RGCGCY	1 cut(s)	159
HhaI	GCGC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	354
Hin6I	GCGC	1 cut(s)	156
HinP1I	GCGC	1 cut(s)	156
HinfI	GANTC	4 cut(s)	8, 59, 251, 381
HphI	GGTGA	1 cut(s)	253
Hpy188I	TCNGA	3 cut(s)	64, 118, 369
Hpy188III	TCNNGA	4 cut(s)	137, 205, 255, 378
Hpy99I	CGWCG	2 cut(s)	98, 101
HpyAV	CCTTC	1 cut(s)	43
HpyCH4III	ACNGT	1 cut(s)	276
HpyCH4IV	ACGT	1 cut(s)	99
HpyCH4V	TGCA	2 cut(s)	28, 148
HpyF3I	CTNAG	2 cut(s)	21, 362
HpySE526I	ACGT	1 cut(s)	99
Hsp92II	CATG	1 cut(s)	354
HspAI	GCGC	1 cut(s)	156
LmnI	GCTCC	1 cut(s)	216
LpnPI	CCDG	9 cut(s)	2, 71, 134, 150, 190, 200, 269, 318, 345
Lsp1109I	GCAGC	2 cut(s)	40, 374
MaeII	ACGT	1 cut(s)	99
MboII	GAAGA	3 cut(s)	52, 270, 321
MluCI	AATT	1 cut(s)	295
MlyI	GAGTC	2 cut(s)	17, 260
MmeI	TCCRAC	2 cut(s)	141, 347
MspR9I	CCNGG	1 cut(s)	333
MvaI	CCWGG	1 cut(s)	333
NcoI	CCATGG	1 cut(s)	350
NlaIII	CATG	1 cut(s)	354
NlaIV	GGNNCC	2 cut(s)	330, 345
NspV	TTCGAA	1 cut(s)	47
PfeI	GAWTC	2 cut(s)	59, 381
PkrI	GCNGC	5 cut(s)	30, 229, 348, 389, 392
PleI	GAGTC	2 cut(s)	16, 259
PpsI	GAGTC	2 cut(s)	16, 259
Psp6I	CCWGG	1 cut(s)	331
PspGI	CCWGG	1 cut(s)	331
PspN4I	GGNNCC	2 cut(s)	330, 345
PspPI	GGNCC	2 cut(s)	114, 329
SatI	GCNGC	5 cut(s)	29, 228, 347, 388, 391
Sau96I	GGNCC	2 cut(s)	114, 329
SchI	GAGTC	2 cut(s)	17, 260
ScrFI	CCNGG	1 cut(s)	333
SetI	ASST	8 cut(s)	18, 87, 102, 225, 243, 337, 345, 377
SfuI	TTCGAA	1 cut(s)	47
SinI	GGWCC	2 cut(s)	114, 329
Sse9I	AATT	1 cut(s)	295
SsiI	CCGC	5 cut(s)	227, 230, 291, 347, 390
StyD4I	CCNGG	1 cut(s)	331
StyI	CCWWGG	1 cut(s)	350
TaaI	ACNGT	1 cut(s)	276
TaiI	ACGT	1 cut(s)	102
TaqI	TCGA	2 cut(s)	47, 379
TasI	AATT	1 cut(s)	295
TauI	GCSGC	3 cut(s)	230, 349, 393
TfiI	GAWTC	2 cut(s)	59, 381
TseI	GCWGC	2 cut(s)	28, 387
VpaK11BI	GGWCC	2 cut(s)	114, 329
XapI	RAATTY	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.