Rh3CG275900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0006426
Physical Location & Seq
Reverse (-)
27466874 .. 27467343
470 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG275900.1

Sequence Viewer

Length: 414 bp
ATGGCACGTCTGACTCTTCTCAGGTACACAGAAGCCACATCGCCGCCACCTCACCTACACCCAACTCCAGTACGTGTTGGTTCCATCGCCTCGTCGAAACGGGTCGGTGAATTAACCCGAGTACCTGACCACCGTGTTATAATGCCTACTGGGATTATAGACAGTTTGATTGGGGCAGTGCCGAGGATTCGGGGTATGCAGCTACACGATTTTTTAAGAGAGACCCAGATAATTTTGTTGGGCATGATGGTTTTGCTGGCAACGAAGATGATTAGAGAGGATGAGAGGCTGGTCGAAGGGGATGGGATTGTGAGAACGGTGGAGGGGAGGAGAGAATGTGAAGTTAGAGCGGAACTTGAGGCGGCGGTGGTTGACGAGTTTCTTTGGGGAATGGGAGATGAGCAACAACACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.4

Weight (kDa)

5.95

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 140
AccBSI CCGCTC 1 cut(s) 350
AciI CCGC 4 cut(s) 44, 350, 362, 365
AfaI GTAC 3 cut(s) 26, 72, 123
AflIII ACRYGT 1 cut(s) 73
AjiI CACGTC 1 cut(s) 8
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 215
Ama87I CYCGRG 1 cut(s) 117
ApeKI GCWGC 1 cut(s) 199
AsuHPI GGTGA 2 cut(s) 44, 119
AvaI CYCGRG 1 cut(s) 117
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BbvI GCAGC 1 cut(s) 211
BccI CCATC 3 cut(s) 92, 241, 296
BcoDI GTCTC 1 cut(s) 215
BfaI CTAG 1 cut(s) 412
BisI GCNGC 3 cut(s) 44, 200, 363
BlsI GCNGC 3 cut(s) 45, 201, 364
BmeT110I CYCGRG 1 cut(s) 117
BmgBI CACGTC 1 cut(s) 8
BmiI GGNNCC 1 cut(s) 82
BmrI ACTGGG 1 cut(s) 159
BmuI ACTGGG 1 cut(s) 159
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 377
BsaAI YACGTR 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 215
BsaJI CCNNGG 1 cut(s) 182
BsaXI ACNNNNNCTCC 2 cut(s) 322, 352
Bse1I ACTGG 2 cut(s) 68, 154
BseDI CCNNGG 1 cut(s) 182
BseGI GGATG 2 cut(s) 286, 307
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 2 cut(s) 68, 154
BseRI GAGGAG 1 cut(s) 343
BseXI GCAGC 1 cut(s) 211
BsiHKCI CYCGRG 1 cut(s) 117
BsmAI GTCTC 1 cut(s) 215
Bso31I GGTCTC 1 cut(s) 215
BsoBI CYCGRG 1 cut(s) 117
BspACI CCGC 4 cut(s) 44, 350, 362, 365
BspCNI CTCAG 1 cut(s) 33
BspLI GGNNCC 1 cut(s) 82
BspTNI GGTCTC 1 cut(s) 215
BsrBI CCGCTC 1 cut(s) 350
BsrI ACTGG 2 cut(s) 68, 154
BssECI CCNNGG 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 134, 164, 319
Bst6I CTCTTC 1 cut(s) 21
BstBAI YACGTR 1 cut(s) 74
BstC8I GCNNGC 1 cut(s) 258
BstDEI CTNAG 1 cut(s) 20
BstF5I GGATG 2 cut(s) 286, 307
BstMAI GTCTC 1 cut(s) 215
BstV1I GCAGC 1 cut(s) 211
BtgZI GCGATG 2 cut(s) 24, 70
BtrI CACGTC 1 cut(s) 8
BtsCI GGATG 2 cut(s) 286, 307
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 1 cut(s) 183
Cac8I GCNNGC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 25, 71, 122
CviAII CATG 1 cut(s) 244
CviJI RGCY 3 cut(s) 35, 202, 289
CviKI_1 RGCY 3 cut(s) 35, 202, 289
CviQI GTAC 3 cut(s) 25, 71, 122
DdeI CTNAG 1 cut(s) 20
Eam1104I CTCTTC 1 cut(s) 21
EarI CTCTTC 1 cut(s) 21
Eco31I GGTCTC 1 cut(s) 215
Eco88I CYCGRG 1 cut(s) 117
FaeI CATG 1 cut(s) 247
FaiI YATR 4 cut(s) 140, 158, 197, 245
FatI CATG 1 cut(s) 243
Fnu4HI GCNGC 3 cut(s) 44, 200, 363
FokI GGATG 2 cut(s) 293, 314
Fsp4HI GCNGC 3 cut(s) 44, 200, 363
FspBI CTAG 1 cut(s) 412
GluI GCNGC 3 cut(s) 44, 200, 363
GsuI CTGGAG 1 cut(s) 51
Hin1II CATG 1 cut(s) 247
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 2 cut(s) 13, 187
HphI GGTGA 2 cut(s) 44, 119
Hpy166II GTNNAC 2 cut(s) 27, 373
Hpy188I TCNGA 1 cut(s) 12
Hpy8I GTNNAC 2 cut(s) 27, 373
Hpy99I CGWCG 1 cut(s) 97
HpyAV CCTTC 1 cut(s) 290
HpyCH4III ACNGT 3 cut(s) 134, 164, 319
HpyCH4IV ACGT 2 cut(s) 7, 73
HpyCH4V TGCA 1 cut(s) 199
HpyF3I CTNAG 1 cut(s) 20
HpySE526I ACGT 2 cut(s) 7, 73
Hsp92II CATG 1 cut(s) 247
LpnPI CCDG 7 cut(s) 7, 81, 135, 138, 239, 242, 275
Lsp1109I GCAGC 1 cut(s) 211
MaeI CTAG 1 cut(s) 412
MaeII ACGT 2 cut(s) 7, 73
MbiI CCGCTC 1 cut(s) 350
MboII GAAGA 2 cut(s) 8, 277
MluCI AATT 2 cut(s) 110, 231
MlyI GAGTC 1 cut(s) 7
MnlI CCTC 8 cut(s) 60, 100, 177, 271, 279, 316, 321, 352
MseI TTAA 2 cut(s) 113, 215
NlaIII CATG 1 cut(s) 247
NlaIV GGNNCC 1 cut(s) 82
NmeAIII GCCGAG 1 cut(s) 207
PfeI GAWTC 1 cut(s) 187
PkrI GCNGC 3 cut(s) 45, 201, 364
PleI GAGTC 1 cut(s) 7
PpsI GAGTC 1 cut(s) 7
Ppu21I YACGTR 1 cut(s) 74
PsiI TTATAA 1 cut(s) 140
PspN4I GGNNCC 1 cut(s) 82
RsaI GTAC 3 cut(s) 26, 72, 123
RsaNI GTAC 3 cut(s) 25, 71, 122
SaqAI TTAA 2 cut(s) 113, 215
SatI GCNGC 3 cut(s) 44, 200, 363
SchI GAGTC 1 cut(s) 7
SetI ASST 7 cut(s) 10, 26, 52, 57, 76, 127, 204
SmlI CTYRAG 1 cut(s) 356
SmoI CTYRAG 1 cut(s) 356
Sse9I AATT 2 cut(s) 110, 231
SsiI CCGC 4 cut(s) 44, 350, 362, 365
SspMI CTAG 1 cut(s) 412
TaaI ACNGT 3 cut(s) 134, 164, 319
TaiI ACGT 2 cut(s) 10, 76
TaqI TCGA 2 cut(s) 95, 294
TasI AATT 2 cut(s) 110, 231
TauI GCSGC 2 cut(s) 46, 365
TfiI GAWTC 1 cut(s) 187
Tru1I TTAA 2 cut(s) 113, 215
Tru9I TTAA 2 cut(s) 113, 215
TscAI CASTG 1 cut(s) 183
TseI GCWGC 1 cut(s) 199
TspRI CASTG 1 cut(s) 183
XspI CTAG 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.