Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Reverse (-)

23243688 .. 23244008

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG229400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCCAAGCTGGACTGCGACGACGTTTTGAGTGCTTGGTCTGACAAATTGTCGCCGTTTCCAGAGGAGTTGCAGGACGGCGCTGATGGAAACAATATCTATGTATGTTTCCTGTATGTTTCTCATCTCTGGAAGGATTGGAGCGAGGTGGCAGCGGTGGTGGAGGTGAGGGAGGAGTCGGGAAGATGGCGTAGAAAACGGTGTCGTCTGGGAGGCGGGAATTTTGGTGGGAGAAGATGGAGGAGGGGGATGGGTCCAGGTCTGGAGGTGCCGCCATGGTTTTTGCTCAGTCGGTGGAGGTCTCGATTCTGCTGCGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

106

Amino Acids

12.31

Weight (kDa)

8.72

Isoelectric Point (pI)

88.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	268
AciI	CCGC	4 cut(s)	155, 216, 272, 315
AcsI	RAATTY	1 cut(s)	220
AhdI	GACNNNNNGTC	1 cut(s)	49
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	306
ApeKI	GCWGC	2 cut(s)	152, 312
ApoI	RAATTY	1 cut(s)	220
AspLEI	GCGC	1 cut(s)	83
AspS9I	GGNCC	1 cut(s)	254
AsuHPI	GGTGA	1 cut(s)	178
AvaII	GGWCC	1 cut(s)	254
BanI	GGYRCC	1 cut(s)	268
BbvI	GCAGC	2 cut(s)	164, 299
BccI	CCATC	4 cut(s)	80, 180, 231, 244
BceAI	ACGGC	2 cut(s)	40, 94
BcgI	CGANNNNNNTGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	1 cut(s)	306
BfoI	RGCGCY	1 cut(s)	84
BisI	GCNGC	4 cut(s)	153, 272, 313, 316
BlsI	GCNGC	4 cut(s)	154, 273, 314, 317
Bme1390I	CCNGG	1 cut(s)	258
Bme18I	GGWCC	1 cut(s)	254
BmeRI	GACNNNNNGTC	1 cut(s)	49
BmgT120I	GGNCC	1 cut(s)	254
BmiI	GGNNCC	2 cut(s)	255, 270
BmrFI	CCNGG	1 cut(s)	258
BpmI	CTGGAG	1 cut(s)	284
BsaI	GGTCTC	1 cut(s)	306
BsaJI	CCNNGG	1 cut(s)	275
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	255
BseMII	CTCAG	1 cut(s)	301
BseRI	GAGGAG	3 cut(s)	80, 188, 256
BseXI	GCAGC	2 cut(s)	164, 299
BshNI	GGYRCC	1 cut(s)	268
BsmAI	GTCTC	1 cut(s)	306
Bso31I	GGTCTC	1 cut(s)	306
Bsp19I	CCATGG	1 cut(s)	275
BspACI	CCGC	4 cut(s)	155, 216, 272, 315
BspCNI	CTCAG	1 cut(s)	300
BspLI	GGNNCC	2 cut(s)	255, 270
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	306
BssECI	CCNNGG	1 cut(s)	275
BssT1I	CCWWGG	1 cut(s)	275
Bst2UI	CCWGG	1 cut(s)	258
Bst4CI	ACNGT	1 cut(s)	201
BstDEI	CTNAG	1 cut(s)	287
BstDSI	CCRYGG	1 cut(s)	275
BstF5I	GGATG	1 cut(s)	255
BstH2I	RGCGCY	1 cut(s)	84
BstHHI	GCGC	1 cut(s)	83
BstMAI	GTCTC	1 cut(s)	306
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstV1I	GCAGC	2 cut(s)	164, 299
BtgI	CCRYGG	1 cut(s)	275
BtsCI	GGATG	1 cut(s)	255
CfoI	GCGC	1 cut(s)	83
Cfr13I	GGNCC	1 cut(s)	254
CviAII	CATG	1 cut(s)	276
CviJI	RGCY	2 cut(s)	10, 318
CviKI_1	RGCY	2 cut(s)	10, 318
DdeI	CTNAG	1 cut(s)	287
DriI	GACNNNNNGTC	1 cut(s)	49
Eam1105I	GACNNNNNGTC	1 cut(s)	49
Eco130I	CCWWGG	1 cut(s)	275
Eco31I	GGTCTC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	254
EcoRII	CCWGG	1 cut(s)	256
EcoT14I	CCWWGG	1 cut(s)	275
ErhI	CCWWGG	1 cut(s)	275
FaeI	CATG	1 cut(s)	279
FaiI	YATR	4 cut(s)	102, 106, 117, 277
FatI	CATG	1 cut(s)	275
FauI	CCCGC	1 cut(s)	209
Fnu4HI	GCNGC	4 cut(s)	153, 272, 313, 316
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	4 cut(s)	153, 272, 313, 316
GlaI	GCGC	1 cut(s)	82
GluI	GCNGC	4 cut(s)	153, 272, 313, 316
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	84
HhaI	GCGC	1 cut(s)	83
Hin1II	CATG	1 cut(s)	279
Hin6I	GCGC	1 cut(s)	81
HinP1I	GCGC	1 cut(s)	81
HinfI	GANTC	2 cut(s)	176, 306
HphI	GGTGA	1 cut(s)	178
Hpy188I	TCNGA	1 cut(s)	43
Hpy188III	TCNNGA	5 cut(s)	62, 130, 180, 263, 303
Hpy99I	CGWCG	2 cut(s)	23, 26
HpyAV	CCTTC	1 cut(s)	127
HpyCH4III	ACNGT	1 cut(s)	201
HpyCH4IV	ACGT	1 cut(s)	24
HpyCH4V	TGCA	1 cut(s)	73
HpyF3I	CTNAG	1 cut(s)	287
HpySE526I	ACGT	1 cut(s)	24
Hsp92II	CATG	1 cut(s)	279
HspAI	GCGC	1 cut(s)	81
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	8 cut(s)	59, 75, 115, 125, 194, 243, 248, 270
Lsp1109I	GCAGC	2 cut(s)	164, 299
MaeII	ACGT	1 cut(s)	24
MboII	GAAGA	2 cut(s)	195, 246
MluCI	AATT	2 cut(s)	47, 220
MlyI	GAGTC	1 cut(s)	185
MspA1I	CMGCKG	1 cut(s)	155
MspR9I	CCNGG	1 cut(s)	258
MvaI	CCWGG	1 cut(s)	258
NcoI	CCATGG	1 cut(s)	275
NlaIII	CATG	1 cut(s)	279
NlaIV	GGNNCC	2 cut(s)	255, 270
PfeI	GAWTC	1 cut(s)	306
PkrI	GCNGC	4 cut(s)	154, 273, 314, 317
PleI	GAGTC	1 cut(s)	184
PpsI	GAGTC	1 cut(s)	184
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	2 cut(s)	255, 270
PspPI	GGNCC	1 cut(s)	254
SatI	GCNGC	4 cut(s)	153, 272, 313, 316
Sau96I	GGNCC	1 cut(s)	254
SchI	GAGTC	1 cut(s)	185
ScrFI	CCNGG	1 cut(s)	258
SetI	ASST	7 cut(s)	12, 27, 150, 168, 262, 270, 302
SinI	GGWCC	1 cut(s)	254
Sse9I	AATT	2 cut(s)	47, 220
SsiI	CCGC	4 cut(s)	155, 216, 272, 315
StyD4I	CCNGG	1 cut(s)	256
StyI	CCWWGG	1 cut(s)	275
TaaI	ACNGT	1 cut(s)	201
TaiI	ACGT	1 cut(s)	27
TaqI	TCGA	1 cut(s)	304
TasI	AATT	2 cut(s)	47, 220
TauI	GCSGC	2 cut(s)	274, 318
TfiI	GAWTC	1 cut(s)	306
TseI	GCWGC	2 cut(s)	152, 312
VpaK11BI	GGWCC	1 cut(s)	254
XapI	RAATTY	1 cut(s)	220

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.