Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Reverse (-)

42838275 .. 42839034

Gene Structure 760 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG354200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 243 bp

ATGGAGAAGCTATCGGTGGTGGAGTCGAAGCTGGCAAAGTTGCTTCCAAAGGAGAAGAGTCCGAATAAGGAGGATCCAGGGTGTGGGCTGATGTTGAAGCTAGACTACGACGACGTTTTGAGTGCTTGGTCAGACAAAGCGTCGTCGTTTTCGGAGGATTTGCAGGGCGGCGCTGATGGAAACCATGTCTCTATATGTTCCATTACGGTGAAATTGGAACTCAGAATATTAACGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

80

Amino Acids

8.74

Weight (kDa)

5.06

Isoelectric Point (pI)

35.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	1 cut(s)	168
AclWI	GGATC	2 cut(s)	68, 81
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	97
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	10, 31, 100
AluI	AGCT	3 cut(s)	10, 31, 100
Alw26I	GTCTC	1 cut(s)	193
AlwI	GGATC	2 cut(s)	68, 81
AspLEI	GCGC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	220
BamHI	GGATCC	1 cut(s)	73
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BccI	CCATC	1 cut(s)	170
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	2 cut(s)	101, 241
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	1 cut(s)	169
BlsI	GCNGC	1 cut(s)	170
Bme1390I	CCNGG	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	83
BseMII	CTCAG	1 cut(s)	235
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	193
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	168
BspCNI	CTCAG	1 cut(s)	234
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	68, 81
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	221
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	173
CseI	GACGC	1 cut(s)	129
CviAII	CATG	1 cut(s)	185
CviJI	RGCY	4 cut(s)	10, 31, 88, 100
CviKI_1	RGCY	4 cut(s)	10, 31, 88, 100
DdeI	CTNAG	1 cut(s)	221
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	188
FaiI	YATR	3 cut(s)	186, 194, 196
FatI	CATG	1 cut(s)	184
Fnu4HI	GCNGC	1 cut(s)	169
Fsp4HI	GCNGC	1 cut(s)	169
FspBI	CTAG	2 cut(s)	101, 241
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	169
HaeII	RGCGCY	1 cut(s)	174
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HinfI	GANTC	2 cut(s)	23, 58
HphI	GGTGA	1 cut(s)	220
Hpy188I	TCNGA	4 cut(s)	63, 133, 154, 224
Hpy99I	CGWCG	4 cut(s)	113, 116, 145, 148
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	163
HpyF3I	CTNAG	1 cut(s)	221
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	188
HspAI	GCGC	1 cut(s)	171
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	17, 63, 90, 149
MaeI	CTAG	2 cut(s)	101, 241
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	73
MluCI	AATT	1 cut(s)	212
MlyI	GAGTC	2 cut(s)	32, 67
MnlI	CCTC	2 cut(s)	64, 148
MseI	TTAA	1 cut(s)	230
MslI	CAYNNNNRTG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	188
NlaIV	GGNNCC	1 cut(s)	75
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	170
PleI	GAGTC	2 cut(s)	31, 66
PpsI	GAGTC	2 cut(s)	31, 66
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	206
SaqAI	TTAA	1 cut(s)	230
SatI	GCNGC	1 cut(s)	169
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	2 cut(s)	32, 67
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	4 cut(s)	12, 33, 102, 117
SgeI	CNNG	7 cut(s)	44, 89, 90, 113, 138, 176, 197
SmiMI	CAYNNNNRTG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	212
SsiI	CCGC	1 cut(s)	168
SspI	AATATT	1 cut(s)	228
SspMI	CTAG	2 cut(s)	101, 241
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	212
TauI	GCSGC	1 cut(s)	171
Tru1I	TTAA	1 cut(s)	230
Tru9I	TTAA	1 cut(s)	230
Van91I	CCANNNNNTGG	1 cut(s)	83
XspI	CTAG	2 cut(s)	101, 241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.