Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Forward (+)

59553413 .. 59553733

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG399500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCGAGGCAGCCGGCGACCCAAGCTGTCGATGAACCCAAGGCCACAACCACCATCAAGGCCGCTCGACCACTTCCGCCACCGCGACTCCGACGCCAGCTTCGCTAGCAGCCGTCCCTCCTCCATCGGAATCGGCCGCAGCCCCGGCGGCTCCATCTCCAACATCGACCTCTACAAAGACCACTCCTACCAGCAATCTGCCCTCTCTACCATCAATTCCTACCTCTCCTCTCACTCCCTCCAAGTCTTCCTCAAATTCCCCATCCCTCCCGCTAGAAAGATCACTGAGGCCCTCAAATTCCTCATCGCCCGCCTCGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

106

Amino Acids

11.86

Weight (kDa)

10.92

Isoelectric Point (pI)

67.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	64
AccII	CGCG	1 cut(s)	84
AciI	CCGC	7 cut(s)	62, 76, 82, 136, 147, 270, 310
AcoI	YGGCCR	1 cut(s)	133
AcsI	RAATTY	2 cut(s)	254, 296
AcyI	GRCGYC	1 cut(s)	93
AluBI	AGCT	2 cut(s)	25, 99
AluI	AGCT	2 cut(s)	25, 99
AoxI	GGCC	4 cut(s)	41, 59, 133, 288
ApeKI	GCWGC	3 cut(s)	9, 108, 138
ApoI	RAATTY	2 cut(s)	254, 296
ArsI	GACNNNNNNTTYG	2 cut(s)	83, 115
AspS9I	GGNCC	1 cut(s)	289
AsuC2I	CCSGG	1 cut(s)	144
AsuNHI	GCTAGC	1 cut(s)	104
BbsI	GAAGAC	1 cut(s)	238
BbvI	GCAGC	3 cut(s)	21, 120, 150
BccI	CCATC	5 cut(s)	61, 131, 161, 218, 269
BceAI	ACGGC	1 cut(s)	96
BcnI	CCSGG	1 cut(s)	144
BfaI	CTAG	2 cut(s)	105, 273
BglI	GCCNNNNNGGC	1 cut(s)	147
BisI	GCNGC	6 cut(s)	10, 62, 109, 136, 139, 148
BlsI	GCNGC	6 cut(s)	11, 63, 110, 137, 140, 149
Bme1390I	CCNGG	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	289
BmiI	GGNNCC	1 cut(s)	151
BmrFI	CCNGG	1 cut(s)	144
BmtI	GCTAGC	1 cut(s)	108
BpiI	GAAGAC	1 cut(s)	238
BpuMI	CCSGG	1 cut(s)	144
BsaHI	GRCGYC	1 cut(s)	93
BsaJI	CCNNGG	2 cut(s)	38, 142
BsaXI	ACNNNNNCTCC	2 cut(s)	71, 101
Bse118I	RCCGGY	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	38, 142
BseGI	GGATG	1 cut(s)	261
BseMII	CTCAG	1 cut(s)	276
BseRI	GAGGAG	2 cut(s)	109, 217
BseX3I	CGGCCG	1 cut(s)	133
BseXI	GCAGC	3 cut(s)	21, 120, 150
Bsh1236I	CGCG	1 cut(s)	84
Bsh1285I	CGRYCG	1 cut(s)	136
BshFI	GGCC	4 cut(s)	43, 61, 135, 290
BsiEI	CGRYCG	1 cut(s)	136
BsiSI	CCGG	2 cut(s)	13, 144
BslFI	GGGAC	1 cut(s)	99
BsmFI	GGGAC	1 cut(s)	99
BsnI	GGCC	4 cut(s)	43, 61, 135, 290
Bsp143I	GATC	1 cut(s)	279
BspACI	CCGC	7 cut(s)	62, 76, 82, 136, 147, 270, 310
BspANI	GGCC	4 cut(s)	43, 61, 135, 290
BspCNI	CTCAG	1 cut(s)	277
BspFNI	CGCG	1 cut(s)	84
BspLI	GGNNCC	1 cut(s)	151
BspOI	GCTAGC	1 cut(s)	108
BsrBI	CCGCTC	1 cut(s)	64
BsrFI	RCCGGY	1 cut(s)	12
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	38, 142
BssMI	GATC	1 cut(s)	279
BssNI	GRCGYC	1 cut(s)	93
BssT1I	CCWWGG	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	93
BstC8I	GCNNGC	4 cut(s)	14, 97, 106, 310
BstDEI	CTNAG	1 cut(s)	285
BstF5I	GGATG	1 cut(s)	261
BstFNI	CGCG	1 cut(s)	84
BstKTI	GATC	1 cut(s)	282
BstMBI	GATC	1 cut(s)	279
BstMCI	CGRYCG	1 cut(s)	136
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 101, 105, 144, 147
BstSCI	CCNGG	1 cut(s)	142
BstUI	CGCG	1 cut(s)	84
BstV1I	GCAGC	3 cut(s)	21, 120, 150
BstV2I	GAAGAC	1 cut(s)	238
BstZI	CGGCCG	1 cut(s)	133
BsuRI	GGCC	4 cut(s)	43, 61, 135, 290
BtgZI	GCGATG	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	261
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	4 cut(s)	14, 97, 106, 310
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	289
CseI	GACGC	1 cut(s)	101
DdeI	CTNAG	1 cut(s)	285
DpnI	GATC	1 cut(s)	281
DpnII	GATC	1 cut(s)	279
EaeI	YGGCCR	1 cut(s)	133
EagI	CGGCCG	1 cut(s)	133
EciI	GGCGGA	1 cut(s)	65
EclXI	CGGCCG	1 cut(s)	133
Eco130I	CCWWGG	1 cut(s)	38
Eco52I	CGGCCG	1 cut(s)	133
EcoO109I	RGGNCCY	1 cut(s)	289
EcoT14I	CCWWGG	1 cut(s)	38
ErhI	CCWWGG	1 cut(s)	38
FaqI	GGGAC	1 cut(s)	99
FauI	CCCGC	2 cut(s)	277, 317
Fnu4HI	GCNGC	6 cut(s)	10, 62, 109, 136, 139, 148
FokI	GGATG	1 cut(s)	248
Fsp4HI	GCNGC	6 cut(s)	10, 62, 109, 136, 139, 148
FspBI	CTAG	2 cut(s)	105, 273
GluI	GCNGC	6 cut(s)	10, 62, 109, 136, 139, 148
HaeIII	GGCC	4 cut(s)	43, 61, 135, 290
HapII	CCGG	2 cut(s)	13, 144
HgaI	GACGC	1 cut(s)	101
Hin1I	GRCGYC	1 cut(s)	93
HinfI	GANTC	2 cut(s)	86, 129
HpaII	CCGG	2 cut(s)	13, 144
Hpy188I	TCNGA	2 cut(s)	91, 128
Hpy99I	CGWCG	1 cut(s)	95
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 101, 105, 144, 147
HpyF3I	CTNAG	1 cut(s)	285
Hsp92I	GRCGYC	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	12
KroNI	GCCGGC	1 cut(s)	14
Kzo9I	GATC	1 cut(s)	279
LmnI	GCTCC	1 cut(s)	155
LpnPI	CCDG	4 cut(s)	26, 109, 157, 203
Lsp1109I	GCAGC	3 cut(s)	21, 120, 150
MaeI	CTAG	2 cut(s)	105, 273
MalI	GATC	1 cut(s)	281
MbiI	CCGCTC	1 cut(s)	64
MboI	GATC	1 cut(s)	279
MboII	GAAGA	1 cut(s)	238
MluCI	AATT	3 cut(s)	214, 254, 296
MlyI	GAGTC	1 cut(s)	80
MmeI	TCCRAC	2 cut(s)	114, 183
MroNI	GCCGGC	1 cut(s)	12
MspI	CCGG	2 cut(s)	13, 144
MspR9I	CCNGG	1 cut(s)	144
MvnI	CGCG	1 cut(s)	84
MwoI	GCNNNNNNNGC	5 cut(s)	22, 101, 105, 144, 147
NaeI	GCCGGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	1 cut(s)	279
NgoMIV	GCCGGC	1 cut(s)	12
NheI	GCTAGC	1 cut(s)	104
NlaIV	GGNNCC	1 cut(s)	151
PcsI	WCGNNNNNNNCGW	1 cut(s)	312
PdiI	GCCGGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	129
PkrI	GCNGC	6 cut(s)	11, 63, 110, 137, 140, 149
PleI	GAGTC	1 cut(s)	80
PpsI	GAGTC	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	151
PspPI	GGNCC	1 cut(s)	289
SatI	GCNGC	6 cut(s)	10, 62, 109, 136, 139, 148
Sau3AI	GATC	1 cut(s)	279
Sau96I	GGNCC	1 cut(s)	289
SchI	GAGTC	1 cut(s)	80
ScrFI	CCNGG	1 cut(s)	144
SetI	ASST	4 cut(s)	27, 101, 171, 225
Sse9I	AATT	3 cut(s)	214, 254, 296
SsiI	CCGC	7 cut(s)	62, 76, 82, 136, 147, 270, 310
SspMI	CTAG	2 cut(s)	105, 273
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	38
TaqI	TCGA	4 cut(s)	29, 66, 165, 315
TasI	AATT	3 cut(s)	214, 254, 296
TauI	GCSGC	3 cut(s)	64, 138, 150
TfiI	GAWTC	1 cut(s)	129
TscAI	CASTG	1 cut(s)	289
TseI	GCWGC	3 cut(s)	9, 108, 138
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	289
XapI	RAATTY	2 cut(s)	254, 296
XspI	CTAG	2 cut(s)	105, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.