Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Reverse (-)

77177331 .. 77177591

Gene Structure 261 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG483900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGAACTGGTGGAGTTTCCCGACCGTTGATGTTCTTGAAATCTCACCCAGATTCAACAAATCTCGGCCATCCATTTCGGCTCCGTTGGCCCCTTCTTCTTCCGGGAAGAAGATGGAGAAACTAGCGGTAGTGGAGTCGAAGCTGGCGGAGTTGCCGCCAAAGGAGGAGGATTCGGAGTGTGGGCTGATGCTGAAGTTGGACTACGACGACGTTTTGAGTGTTTGGTCCAACAAATTGTCGCCATTTTCGGAGGAGTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

86

Amino Acids

9.66

Weight (kDa)

4.73

Isoelectric Point (pI)

75.4

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	125, 146, 155
AcoI	YGGCCR	1 cut(s)	65
AcuI	CTGAAG	1 cut(s)	212
AgsI	TTSAA	2 cut(s)	38, 55
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
AoxI	GGCC	2 cut(s)	65, 87
AspS9I	GGNCC	2 cut(s)	88, 225
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	36
AvaII	GGWCC	1 cut(s)	225
BarI	GAAGNNNNNNTAC	2 cut(s)	185, 217
BccI	CCATC	2 cut(s)	76, 106
BcnI	CCSGG	1 cut(s)	103
BfaI	CTAG	1 cut(s)	122
BisI	GCNGC	1 cut(s)	155
BlsI	GCNGC	1 cut(s)	156
Bme1390I	CCNGG	1 cut(s)	103
Bme18I	GGWCC	1 cut(s)	225
BmgT120I	GGNCC	2 cut(s)	88, 225
BmiI	GGNNCC	2 cut(s)	81, 90
BmrFI	CCNGG	1 cut(s)	103
BmsI	GCATC	1 cut(s)	177
BpuMI	CCSGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	1 cut(s)	242
Bse1I	ACTGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	68
BseNI	ACTGG	1 cut(s)	11
BseRI	GAGGAG	1 cut(s)	179
Bsh1285I	CGRYCG	1 cut(s)	24
BshFI	GGCC	2 cut(s)	67, 89
BsiEI	CGRYCG	1 cut(s)	24
BsiSI	CCGG	1 cut(s)	102
BsnI	GGCC	2 cut(s)	67, 89
BspACI	CCGC	3 cut(s)	125, 146, 155
BspANI	GGCC	2 cut(s)	67, 89
BspLI	GGNNCC	2 cut(s)	81, 90
BsrI	ACTGG	1 cut(s)	11
Bst4CI	ACNGT	1 cut(s)	25
BstC8I	GCNNGC	1 cut(s)	144
BstF5I	GGATG	1 cut(s)	68
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	101
BsuRI	GGCC	2 cut(s)	67, 89
BtsCI	GGATG	1 cut(s)	68
Cac8I	GCNNGC	1 cut(s)	144
Cfr13I	GGNCC	2 cut(s)	88, 225
CviJI	RGCY	5 cut(s)	67, 80, 89, 142, 184
CviKI_1	RGCY	5 cut(s)	67, 80, 89, 142, 184
EaeI	YGGCCR	1 cut(s)	65
EciI	GGCGGA	1 cut(s)	161
Eco47I	GGWCC	1 cut(s)	225
Eco57I	CTGAAG	1 cut(s)	212
Fnu4HI	GCNGC	1 cut(s)	155
FokI	GGATG	1 cut(s)	55
Fsp4HI	GCNGC	1 cut(s)	155
FspBI	CTAG	1 cut(s)	122
GluI	GCNGC	1 cut(s)	155
HaeIII	GGCC	2 cut(s)	67, 89
HapII	CCGG	1 cut(s)	102
HinfI	GANTC	3 cut(s)	51, 134, 170
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	36
Hpy188I	TCNGA	2 cut(s)	175, 250
Hpy188III	TCNNGA	2 cut(s)	19, 35
Hpy99I	CGWCG	2 cut(s)	209, 212
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	1 cut(s)	210
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpySE526I	ACGT	1 cut(s)	210
LmnI	GCTCC	1 cut(s)	85
LpnPI	CCDG	3 cut(s)	61, 115, 128
LweI	GCATC	1 cut(s)	177
MaeI	CTAG	1 cut(s)	122
MaeII	ACGT	1 cut(s)	210
MboII	GAAGA	4 cut(s)	87, 90, 118, 121
MluCI	AATT	1 cut(s)	233
MlyI	GAGTC	1 cut(s)	143
MmeI	TCCRAC	2 cut(s)	177, 252
MnlI	CCTC	3 cut(s)	157, 160, 244
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	103
NlaIV	GGNNCC	2 cut(s)	81, 90
NmeAIII	GCCGAG	1 cut(s)	43
PfeI	GAWTC	2 cut(s)	51, 170
PfoI	TCCNGGA	1 cut(s)	101
PkrI	GCNGC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	81, 90
PspPI	GGNCC	2 cut(s)	88, 225
SatI	GCNGC	1 cut(s)	155
Sau96I	GGNCC	2 cut(s)	88, 225
SchI	GAGTC	1 cut(s)	143
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	2 cut(s)	144, 213
SfaNI	GCATC	1 cut(s)	177
SgeI	CNNG	9 cut(s)	19, 31, 47, 60, 75, 114, 115, 134, 155
SinI	GGWCC	1 cut(s)	225
Sse9I	AATT	1 cut(s)	233
SsiI	CCGC	3 cut(s)	125, 146, 155
SspMI	CTAG	1 cut(s)	122
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	1 cut(s)	213
TaqI	TCGA	1 cut(s)	137
TasI	AATT	1 cut(s)	233
TauI	GCSGC	1 cut(s)	157
TfiI	GAWTC	2 cut(s)	51, 170
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	72
VpaK11BI	GGWCC	1 cut(s)	225
XspI	CTAG	1 cut(s)	122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.