Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Forward (+)

17049987 .. 17050211

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG181200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAGAGGCAGCCGGCAACCCAAGCCGTCGATGAACCCACGGCCACCATCAAGGCCGCTCGACCGCTTCCACCATCTCGACTCCGTAGCCAGCAGCCGCCCCTCTATCGGAATCAGCGGTGGCCCCGGTGGCTCCATCTCCAACGTCGACCTATACAAAGACCGCTCCTACCAGCAATTCGCCCTCTCCGCCATCAATTCCTACCTCTTCTCTCACTCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

74

Amino Acids

8.13

Weight (kDa)

10.5

Isoelectric Point (pI)

47.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	58, 165
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	6 cut(s)	56, 64, 97, 117, 163, 189
AcoI	YGGCCR	1 cut(s)	41
AfiI	CCNNNNNNNGG	1 cut(s)	107
AoxI	GGCC	3 cut(s)	41, 53, 121
ApeKI	GCWGC	2 cut(s)	9, 93
AspS9I	GGNCC	1 cut(s)	122
AsuC2I	CCSGG	1 cut(s)	126
BbvI	GCAGC	2 cut(s)	21, 105
BccI	CCATC	4 cut(s)	55, 81, 143, 200
BceAI	ACGGC	2 cut(s)	10, 56
BcnI	CCSGG	1 cut(s)	126
BglI	GCCNNNNNGGC	1 cut(s)	129
BisI	GCNGC	4 cut(s)	10, 56, 94, 97
BlsI	GCNGC	4 cut(s)	11, 57, 95, 98
Bme1390I	CCNGG	1 cut(s)	126
BmgT120I	GGNCC	1 cut(s)	122
BmiI	GGNNCC	2 cut(s)	124, 133
BmrFI	CCNGG	1 cut(s)	126
BpuMI	CCSGG	1 cut(s)	126
BsaJI	CCNNGG	2 cut(s)	38, 124
Bsc4I	CCNNNNNNNGG	1 cut(s)	107
Bse118I	RCCGGY	1 cut(s)	12
BseDI	CCNNGG	2 cut(s)	38, 124
BseLI	CCNNNNNNNGG	1 cut(s)	107
BseXI	GCAGC	2 cut(s)	21, 105
Bsh1285I	CGRYCG	1 cut(s)	64
BshFI	GGCC	3 cut(s)	43, 55, 123
BsiEI	CGRYCG	1 cut(s)	64
BsiSI	CCGG	2 cut(s)	13, 126
BslI	CCNNNNNNNGG	1 cut(s)	107
BsnI	GGCC	3 cut(s)	43, 55, 123
BspACI	CCGC	6 cut(s)	56, 64, 97, 117, 163, 189
BspANI	GGCC	3 cut(s)	43, 55, 123
BspLI	GGNNCC	2 cut(s)	124, 133
BsrBI	CCGCTC	2 cut(s)	58, 165
BsrFI	RCCGGY	1 cut(s)	12
BssAI	RCCGGY	1 cut(s)	12
BssECI	CCNNGG	2 cut(s)	38, 124
Bst6I	CTCTTC	1 cut(s)	212
BstC8I	GCNNGC	2 cut(s)	14, 91
BstDSI	CCRYGG	1 cut(s)	38
BstMCI	CGRYCG	1 cut(s)	64
BstMWI	GCNNNNNNNGC	3 cut(s)	22, 129, 188
BstSCI	CCNGG	1 cut(s)	124
BstV1I	GCAGC	2 cut(s)	21, 105
BsuRI	GGCC	3 cut(s)	43, 55, 123
BtgI	CCRYGG	1 cut(s)	38
Cac8I	GCNNGC	2 cut(s)	14, 91
Cfr10I	RCCGGY	1 cut(s)	12
Cfr13I	GGNCC	1 cut(s)	122
CviJI	RGCY	8 cut(s)	12, 25, 43, 55, 89, 96, 123, 132
CviKI_1	RGCY	8 cut(s)	12, 25, 43, 55, 89, 96, 123, 132
EaeI	YGGCCR	1 cut(s)	41
Eam1104I	CTCTTC	1 cut(s)	212
EarI	CTCTTC	1 cut(s)	212
EciI	GGCGGA	1 cut(s)	178
FaiI	YATR	1 cut(s)	154
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	4 cut(s)	10, 56, 94, 97
Fsp4HI	GCNGC	4 cut(s)	10, 56, 94, 97
GluI	GCNGC	4 cut(s)	10, 56, 94, 97
HaeIII	GGCC	3 cut(s)	43, 55, 123
HapII	CCGG	2 cut(s)	13, 126
HincII	GTYRAC	1 cut(s)	148
HindII	GTYRAC	1 cut(s)	148
HinfI	GANTC	2 cut(s)	80, 111
HpaII	CCGG	2 cut(s)	13, 126
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188I	TCNGA	1 cut(s)	110
Hpy188III	TCNNGA	1 cut(s)	77
Hpy8I	GTNNAC	1 cut(s)	148
Hpy99I	CGWCG	2 cut(s)	31, 149
HpyCH4IV	ACGT	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	22, 129, 188
HpySE526I	ACGT	1 cut(s)	144
KroI	GCCGGC	1 cut(s)	12
KroNI	GCCGGC	1 cut(s)	14
LmnI	GCTCC	2 cut(s)	137, 170
LpnPI	CCDG	4 cut(s)	26, 103, 139, 185
Lsp1109I	GCAGC	2 cut(s)	21, 105
MaeII	ACGT	1 cut(s)	144
MbiI	CCGCTC	2 cut(s)	58, 165
MboII	GAAGA	1 cut(s)	199
MluCI	AATT	2 cut(s)	176, 196
MlyI	GAGTC	1 cut(s)	74
MmeI	TCCRAC	1 cut(s)	165
MnlI	CCTC	3 cut(s)	112, 194, 215
MroNI	GCCGGC	1 cut(s)	12
MspA1I	CMGCKG	1 cut(s)	117
MspI	CCGG	2 cut(s)	13, 126
MspR9I	CCNGG	1 cut(s)	126
MwoI	GCNNNNNNNGC	3 cut(s)	22, 129, 188
NaeI	GCCGGC	1 cut(s)	14
NciI	CCSGG	1 cut(s)	126
NgoMIV	GCCGGC	1 cut(s)	12
NlaIV	GGNNCC	2 cut(s)	124, 133
PdiI	GCCGGC	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	111
PkrI	GCNGC	4 cut(s)	11, 57, 95, 98
PleI	GAGTC	1 cut(s)	74
PpsI	GAGTC	1 cut(s)	74
PspN4I	GGNNCC	2 cut(s)	124, 133
PspPI	GGNCC	1 cut(s)	122
SalI	GTCGAC	1 cut(s)	146
SatI	GCNGC	4 cut(s)	10, 56, 94, 97
Sau96I	GGNCC	1 cut(s)	122
SchI	GAGTC	1 cut(s)	74
ScrFI	CCNGG	1 cut(s)	126
SetI	ASST	3 cut(s)	147, 153, 207
Sse9I	AATT	2 cut(s)	176, 196
SsiI	CCGC	6 cut(s)	56, 64, 97, 117, 163, 189
StyD4I	CCNGG	1 cut(s)	124
TaiI	ACGT	1 cut(s)	147
TaqI	TCGA	4 cut(s)	29, 60, 78, 147
TasI	AATT	2 cut(s)	176, 196
TauI	GCSGC	2 cut(s)	58, 99
TfiI	GAWTC	1 cut(s)	111
TseI	GCWGC	2 cut(s)	9, 93
TspDTI	ATGAA	1 cut(s)	47
TspGWI	ACGGA	1 cut(s)	73
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.