Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Reverse (-)

36255856 .. 36257962

Gene Structure 2107 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG193200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGACAAGCTAGCGGTGGTGGAGTTGAAAATGGCTGAGTTGCTGCCTAAGGAGAAGAGTCTGAAGGAGGAGGATTCGGAGTGTGGGCTGATGATACAGCTAGACTATGACAACATTTTGAGTGCTTGGTCTGACAAAGCGTCGCCGTTTCCCGAGGAGTTACAGGGCGGCGCTGATGGAAGCCATGTCTCTGGTTTCTCCAACAAAAATTTCAATCTCTCATCTCTACTACCAAAATTGGAATCCCACTTGAAAACTTTCACAGTTAACATGAGAGTCAACCGACGACCCAAGCCGTCGATGAACCCCTGGCCACCACCATCATCAAGGCCTCTCGACCACTTCTGCCACCTCTACTCTGATGCTAGCTTCACAAGCAGCCGCCCCTCCTCTATCGGAATCAGCAACGGCCCCGATAGCTCCATCTCTAATGTCAACCTCCATAAAGACCGCTCCTACCAGCAATCTGCCCTCTCCGCCATCAATTCCTACGTGCCTCTCCTCTCACTCCCTCCAAGTCTTCCTCAAATTCTCCATCCCTCCCGCTGGAGAGATCACCGAGGCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000228 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000777 GO:0000778 GO:0000779 GO:0000780 GO:0000793 GO:0000794 GO:0000819 GO:0003674 GO:0005198 GO:0005200 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007010 GO:0007049 GO:0007059 GO:0007080 GO:0008150 GO:0008608 GO:0009987 GO:0016043 GO:0022402 GO:0031262 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051315 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0098687 GO:0098813 GO:0140014 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Ndc80_HEC

Protein Analysis

189

Amino Acids

21.05

Weight (kDa)

7.06

Isoelectric Point (pI)

69.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	453
AciI	CCGC	6 cut(s)	14, 168, 382, 451, 477, 544
AcoI	YGGCCR	1 cut(s)	311
AcsI	RAATTY	2 cut(s)	208, 528
AcuI	CTGAAG	1 cut(s)	83
AfiI	CCNNNNNNNGG	1 cut(s)	546
AgsI	TTSAA	3 cut(s)	28, 214, 253
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	308
AjuI	GAANNNNNNNTTGG	2 cut(s)	194, 226
AluBI	AGCT	4 cut(s)	10, 100, 369, 420
AluI	AGCT	4 cut(s)	10, 100, 369, 420
Alw26I	GTCTC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	152
AoxI	GGCC	4 cut(s)	311, 329, 409, 562
ApeKI	GCWGC	2 cut(s)	43, 378
ApoI	RAATTY	2 cut(s)	208, 528
Asp700I	GAANNNNTTC	1 cut(s)	257
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	410
AsuHPI	GGTGA	1 cut(s)	548
AsuNHI	GCTAGC	2 cut(s)	10, 365
AvaI	CYCGRG	1 cut(s)	152
AxyI	CCTNAGG	1 cut(s)	48
BalI	TGGCCA	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	30, 390
BccI	CCATC	5 cut(s)	170, 328, 431, 488, 543
BceAI	ACGGC	3 cut(s)	130, 280, 424
BciT130I	CCWGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	193
BfaI	CTAG	3 cut(s)	11, 101, 366
BfoI	RGCGCY	1 cut(s)	174
BisI	GCNGC	4 cut(s)	44, 169, 379, 382
BlsI	GCNGC	4 cut(s)	45, 170, 380, 383
Bme1390I	CCNGG	1 cut(s)	310
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmeT110I	CYCGRG	1 cut(s)	152
BmgT120I	GGNCC	1 cut(s)	410
BmiI	GGNNCC	1 cut(s)	412
BmrFI	CCNGG	1 cut(s)	310
BmsI	GCATC	1 cut(s)	352
BmtI	GCTAGC	2 cut(s)	14, 369
BpiI	GAAGAC	1 cut(s)	512
BpmI	CTGGAG	1 cut(s)	568
BsaAI	YACGTR	1 cut(s)	493
BsaJI	CCNNGG	3 cut(s)	153, 308, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	546
Bse21I	CCTNAGG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	310
BseDI	CCNNGG	3 cut(s)	153, 308, 559
BseGI	GGATG	1 cut(s)	535
BseLI	CCNNNNNNNGG	1 cut(s)	546
BseMII	CTCAG	1 cut(s)	27
BseRI	GAGGAG	4 cut(s)	83, 170, 379, 491
BseXI	GCAGC	2 cut(s)	30, 390
BshFI	GGCC	4 cut(s)	313, 331, 411, 564
BsiHKCI	CYCGRG	1 cut(s)	152
BslI	CCNNNNNNNGG	1 cut(s)	546
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	4 cut(s)	313, 331, 411, 564
BsoBI	CYCGRG	1 cut(s)	152
Bsp143I	GATC	1 cut(s)	553
BspACI	CCGC	6 cut(s)	14, 168, 382, 451, 477, 544
BspANI	GGCC	4 cut(s)	313, 331, 411, 564
BspCNI	CTCAG	1 cut(s)	28
BspLI	GGNNCC	1 cut(s)	412
BspOI	GCTAGC	2 cut(s)	14, 369
BsrBI	CCGCTC	1 cut(s)	453
BssECI	CCNNGG	3 cut(s)	153, 308, 559
BssMI	GATC	1 cut(s)	553
Bst2UI	CCWGG	1 cut(s)	310
Bst4CI	ACNGT	1 cut(s)	265
Bst6I	CTCTTC	1 cut(s)	50
BstBAI	YACGTR	1 cut(s)	493
BstC8I	GCNNGC	2 cut(s)	12, 367
BstDEI	CTNAG	2 cut(s)	36, 48
BstF5I	GGATG	1 cut(s)	535
BstH2I	RGCGCY	1 cut(s)	174
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	556
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	553
BstMWI	GCNNNNNNNGC	3 cut(s)	375, 417, 476
BstNI	CCWGG	1 cut(s)	310
BstSCI	CCNGG	1 cut(s)	308
BstV1I	GCAGC	2 cut(s)	30, 390
BstV2I	GAAGAC	1 cut(s)	512
BstXI	CCANNNNNNTGG	1 cut(s)	191
Bsu36I	CCTNAGG	1 cut(s)	48
BsuRI	GGCC	4 cut(s)	313, 331, 411, 564
BtsCI	GGATG	1 cut(s)	535
Cac8I	GCNNGC	2 cut(s)	12, 367
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	410
CseI	GACGC	1 cut(s)	129
CviAII	CATG	2 cut(s)	185, 271
DdeI	CTNAG	2 cut(s)	36, 48
DpnI	GATC	1 cut(s)	555
DpnII	GATC	1 cut(s)	553
DriI	GACNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	1 cut(s)	311
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	50
EciI	GGCGGA	1 cut(s)	466
Eco147I	AGGCCT	2 cut(s)	331, 564
Eco57I	CTGAAG	1 cut(s)	83
Eco81I	CCTNAGG	1 cut(s)	48
Eco88I	CYCGRG	1 cut(s)	152
EcoRII	CCWGG	1 cut(s)	308
FaeI	CATG	2 cut(s)	188, 274
FaiI	YATR	4 cut(s)	108, 186, 272, 444
FatI	CATG	2 cut(s)	184, 270
FauI	CCCGC	1 cut(s)	551
Fnu4HI	GCNGC	4 cut(s)	44, 169, 379, 382
FokI	GGATG	1 cut(s)	522
Fsp4HI	GCNGC	4 cut(s)	44, 169, 379, 382
FspBI	CTAG	3 cut(s)	11, 101, 366
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	4 cut(s)	44, 169, 379, 382
GsuI	CTGGAG	1 cut(s)	568
HaeII	RGCGCY	1 cut(s)	174
HaeIII	GGCC	4 cut(s)	313, 331, 411, 564
HgaI	GACGC	1 cut(s)	129
HhaI	GCGC	1 cut(s)	173
Hin1II	CATG	2 cut(s)	188, 274
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HincII	GTYRAC	3 cut(s)	268, 280, 436
HindII	GTYRAC	3 cut(s)	268, 280, 436
HinfI	GANTC	5 cut(s)	58, 74, 242, 276, 399
HpaI	GTTAAC	1 cut(s)	268
HphI	GGTGA	1 cut(s)	548
Hpy166II	GTNNAC	3 cut(s)	268, 280, 436
Hpy188I	TCNGA	5 cut(s)	63, 79, 133, 361, 398
Hpy188III	TCNNGA	2 cut(s)	152, 335
Hpy8I	GTNNAC	3 cut(s)	268, 280, 436
Hpy99I	CGWCG	3 cut(s)	145, 288, 301
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	265
HpyCH4IV	ACGT	1 cut(s)	492
HpyF10VI	GCNNNNNNNGC	3 cut(s)	375, 417, 476
HpyF3I	CTNAG	2 cut(s)	36, 48
HpySE526I	ACGT	1 cut(s)	492
Hsp92II	CATG	2 cut(s)	188, 274
HspAI	GCGC	1 cut(s)	171
KspAI	GTTAAC	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	553
LmnI	GCTCC	2 cut(s)	425, 458
LpnPI	CCDG	6 cut(s)	149, 177, 295, 322, 473, 532
Lsp1109I	GCAGC	2 cut(s)	30, 390
LweI	GCATC	1 cut(s)	352
MaeI	CTAG	3 cut(s)	11, 101, 366
MaeII	ACGT	1 cut(s)	492
MaeIII	GTNAC	1 cut(s)	159
MalI	GATC	1 cut(s)	555
MbiI	CCGCTC	1 cut(s)	453
MboI	GATC	1 cut(s)	553
MboII	GAAGA	2 cut(s)	67, 512
MlsI	TGGCCA	1 cut(s)	313
MluCI	AATT	4 cut(s)	208, 236, 484, 528
MluNI	TGGCCA	1 cut(s)	313
MlyI	GAGTC	2 cut(s)	67, 285
MmeI	TCCRAC	1 cut(s)	225
Mox20I	TGGCCA	1 cut(s)	313
MroXI	GAANNNNTTC	1 cut(s)	257
MscI	TGGCCA	1 cut(s)	313
MseI	TTAA	2 cut(s)	267, 568
Msp20I	TGGCCA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	546
MspR9I	CCNGG	1 cut(s)	310
MvaI	CCWGG	1 cut(s)	310
MwoI	GCNNNNNNNGC	3 cut(s)	375, 417, 476
NdeII	GATC	1 cut(s)	553
NheI	GCTAGC	2 cut(s)	10, 365
NlaIII	CATG	2 cut(s)	188, 274
NlaIV	GGNNCC	1 cut(s)	412
PceI	AGGCCT	2 cut(s)	331, 564
PdmI	GAANNNNTTC	1 cut(s)	257
PfeI	GAWTC	3 cut(s)	74, 242, 399
PkrI	GCNGC	4 cut(s)	45, 170, 380, 383
PleI	GAGTC	2 cut(s)	66, 284
PpsI	GAGTC	2 cut(s)	66, 284
Ppu21I	YACGTR	1 cut(s)	493
Psp6I	CCWGG	1 cut(s)	308
PspGI	CCWGG	1 cut(s)	308
PspN4I	GGNNCC	1 cut(s)	412
PspPI	GGNCC	1 cut(s)	410
SaqAI	TTAA	2 cut(s)	267, 568
SatI	GCNGC	4 cut(s)	44, 169, 379, 382
Sau3AI	GATC	1 cut(s)	553
Sau96I	GGNCC	1 cut(s)	410
SchI	GAGTC	2 cut(s)	67, 285
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	7 cut(s)	12, 102, 354, 371, 422, 441, 495
SfaNI	GCATC	1 cut(s)	352
Sse9I	AATT	4 cut(s)	208, 236, 484, 528
SseBI	AGGCCT	2 cut(s)	331, 564
SsiI	CCGC	6 cut(s)	14, 168, 382, 451, 477, 544
SspMI	CTAG	3 cut(s)	11, 101, 366
StuI	AGGCCT	2 cut(s)	331, 564
StyD4I	CCNGG	1 cut(s)	308
TaaI	ACNGT	1 cut(s)	265
TaiI	ACGT	1 cut(s)	495
TaqI	TCGA	2 cut(s)	299, 336
TasI	AATT	4 cut(s)	208, 236, 484, 528
TauI	GCSGC	2 cut(s)	171, 384
TfiI	GAWTC	3 cut(s)	74, 242, 399
Tru1I	TTAA	2 cut(s)	267, 568
Tru9I	TTAA	2 cut(s)	267, 568
TseI	GCWGC	2 cut(s)	43, 378
TspDTI	ATGAA	1 cut(s)	317
XapI	RAATTY	2 cut(s)	208, 528
XmnI	GAANNNNTTC	1 cut(s)	257
XspI	CTAG	3 cut(s)	11, 101, 366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.