Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008178.1

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Reverse (-)

907 .. 2434

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008178.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

atggagaagctatcggtggtggagtcgaagctggcaaagttgcttccaaaggataagagtccgaataaggaggatctagggtgtgggctgatgttgaagctagactacgacgacgttttgactgcttggtcagacaaagcgtcgtcgttttcggaggagttgcagggcggcgttgatggaaaccatgtctctatatgttccattacggtgatttgcagggcggcgctgatggaaaccatgtctctatatgttccattacgaatgggttaccagaacaaagaagataagccagagtcctctgaggatgggtcggcggcgaggattctggatcttgatgtccggcttcctctgagcacgctgatggtggcggttaaggtgtcgctgaatttgtttacttttacttctttgattgatgggtattgtaaggctggtagtttagaggttgcaaatggattgcttaagggaataaataaatcattagttttaccagagagagcgaagaaggacgcgttcaagaaggcagcatgtgccgtgggtgaggcggtgaatggtggatgcaagagttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

188

Amino Acids

20.19

Weight (kDa)

5.93

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	127
AccII	CGCG	1 cut(s)	509
AciI	CCGC	5 cut(s)	168, 221, 314, 368, 542
AclWI	GGATC	2 cut(s)	81, 336
AcsI	RAATTY	1 cut(s)	385
AflII	CTTAAG	1 cut(s)	458
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	2 cut(s)	97, 514
AhdI	GACNNNNNGTC	1 cut(s)	139
AluBI	AGCT	3 cut(s)	10, 31, 100
AluI	AGCT	3 cut(s)	10, 31, 100
Alw21I	GWGCWC	1 cut(s)	356
Alw26I	GTCTC	2 cut(s)	193, 246
AlwI	GGATC	2 cut(s)	81, 336
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	1 cut(s)	385
AspLEI	GCGC	1 cut(s)	226
AsuHPI	GGTGA	3 cut(s)	220, 548, 556
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
Bbv12I	GWGCWC	1 cut(s)	356
BbvI	GCAGC	1 cut(s)	533
BccI	CCATC	5 cut(s)	170, 223, 299, 355, 407
BceAI	ACGGC	1 cut(s)	515
BcoDI	GTCTC	2 cut(s)	193, 246
BfaI	CTAG	2 cut(s)	77, 101
BfoI	RGCGCY	1 cut(s)	227
BfrI	CTTAAG	1 cut(s)	458
BisI	GCNGC	4 cut(s)	169, 222, 315, 522
BlsI	GCNGC	4 cut(s)	170, 223, 316, 523
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmsI	GCATC	1 cut(s)	545
BsaJI	CCNNGG	1 cut(s)	531
BseDI	CCNNGG	1 cut(s)	531
BseGI	GGATG	2 cut(s)	310, 560
BseMII	CTCAG	2 cut(s)	291, 341
BseRI	GAGGAG	1 cut(s)	170
BseXI	GCAGC	1 cut(s)	533
Bsh1236I	CGCG	1 cut(s)	509
BsiHKAI	GWGCWC	1 cut(s)	356
BsiSI	CCGG	1 cut(s)	340
BsmAI	GTCTC	2 cut(s)	193, 246
Bsp1286I	GDGCHC	1 cut(s)	356
Bsp143I	GATC	2 cut(s)	73, 328
BspACI	CCGC	5 cut(s)	168, 221, 314, 368, 542
BspCNI	CTCAG	2 cut(s)	292, 342
BspFNI	CGCG	1 cut(s)	509
BspPI	GGATC	2 cut(s)	81, 336
BspTI	CTTAAG	1 cut(s)	458
BssECI	CCNNGG	1 cut(s)	531
BssMI	GATC	2 cut(s)	73, 328
Bst4CI	ACNGT	1 cut(s)	208
BstAFI	CTTAAG	1 cut(s)	458
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	33, 356
BstDEI	CTNAG	2 cut(s)	300, 350
BstDSI	CCRYGG	1 cut(s)	531
BstEII	GGTNACC	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	310, 560
BstFNI	CGCG	1 cut(s)	509
BstH2I	RGCGCY	1 cut(s)	227
BstHHI	GCGC	1 cut(s)	226
BstKTI	GATC	2 cut(s)	76, 331
BstMAI	GTCTC	2 cut(s)	193, 246
BstMBI	GATC	2 cut(s)	73, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	527
BstNSI	RCATGY	1 cut(s)	528
BstPI	GGTNACC	1 cut(s)	266
BstUI	CGCG	1 cut(s)	509
BstV1I	GCAGC	1 cut(s)	533
BstX2I	RGATCY	2 cut(s)	73, 328
BstYI	RGATCY	2 cut(s)	73, 328
BtgI	CCRYGG	1 cut(s)	531
BtsCI	GGATG	2 cut(s)	310, 560
Cac8I	GCNNGC	2 cut(s)	33, 356
CfoI	GCGC	1 cut(s)	226
CseI	GACGC	2 cut(s)	129, 515
CviAII	CATG	3 cut(s)	185, 238, 525
CviJI	RGCY	7 cut(s)	10, 31, 88, 100, 289, 343, 428
CviKI_1	RGCY	7 cut(s)	10, 31, 88, 100, 289, 343, 428
DdeI	CTNAG	2 cut(s)	300, 350
DpnI	GATC	2 cut(s)	75, 330
DpnII	GATC	2 cut(s)	73, 328
DrdI	GACNNNNNNGTC	1 cut(s)	127
DriI	GACNNNNNGTC	1 cut(s)	139
DseDI	GACNNNNNNGTC	1 cut(s)	127
Eam1105I	GACNNNNNGTC	1 cut(s)	139
Eco91I	GGTNACC	1 cut(s)	266
EcoO65I	GGTNACC	1 cut(s)	266
FaeI	CATG	3 cut(s)	188, 241, 528
FaiI	YATR	7 cut(s)	186, 194, 196, 239, 247, 249, 526
FatI	CATG	3 cut(s)	184, 237, 524
Fnu4HI	GCNGC	4 cut(s)	169, 222, 315, 522
FokI	GGATG	1 cut(s)	317
Fsp4HI	GCNGC	4 cut(s)	169, 222, 315, 522
FspBI	CTAG	2 cut(s)	77, 101
GlaI	GCGC	1 cut(s)	225
GluI	GCNGC	4 cut(s)	169, 222, 315, 522
HaeII	RGCGCY	1 cut(s)	227
HapII	CCGG	1 cut(s)	340
HgaI	GACGC	2 cut(s)	129, 515
HhaI	GCGC	1 cut(s)	226
Hin1II	CATG	3 cut(s)	188, 241, 528
Hin6I	GCGC	1 cut(s)	224
HinP1I	GCGC	1 cut(s)	224
HinfI	GANTC	4 cut(s)	23, 58, 293, 322
HpaII	CCGG	1 cut(s)	340
HphI	GGTGA	3 cut(s)	220, 548, 556
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	5 cut(s)	63, 133, 154, 301, 351
Hpy188III	TCNNGA	3 cut(s)	326, 332, 514
Hpy8I	GTNNAC	1 cut(s)	393
Hpy99I	CGWCG	4 cut(s)	113, 116, 145, 148
HpyAV	CCTTC	2 cut(s)	496, 511
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	4 cut(s)	163, 216, 446, 558
HpyF10VI	GCNNNNNNNGC	1 cut(s)	527
HpyF3I	CTNAG	2 cut(s)	300, 350
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	3 cut(s)	188, 241, 528
HspAI	GCGC	1 cut(s)	224
Kzo9I	GATC	2 cut(s)	73, 328
LpnPI	CCDG	9 cut(s)	17, 149, 202, 284, 303, 311, 353, 414, 501
Lsp1109I	GCAGC	1 cut(s)	533
LweI	GCATC	1 cut(s)	545
MaeI	CTAG	2 cut(s)	77, 101
MaeII	ACGT	1 cut(s)	114
MaeIII	GTNAC	1 cut(s)	266
MalI	GATC	2 cut(s)	75, 330
MboI	GATC	2 cut(s)	73, 328
MboII	GAAGA	2 cut(s)	293, 511
MflI	RGATCY	2 cut(s)	73, 328
MhlI	GDGCHC	1 cut(s)	356
MluCI	AATT	1 cut(s)	385
MluI	ACGCGT	1 cut(s)	507
MlyI	GAGTC	3 cut(s)	32, 67, 302
MnlI	CCTC	8 cut(s)	64, 148, 295, 307, 312, 357, 433, 532
MseI	TTAA	2 cut(s)	372, 459
MslI	CAYNNNNRTG	2 cut(s)	206, 359
MspCI	CTTAAG	1 cut(s)	458
MspI	CCGG	1 cut(s)	340
MvnI	CGCG	1 cut(s)	509
MwoI	GCNNNNNNNGC	1 cut(s)	527
NdeII	GATC	2 cut(s)	73, 328
NlaIII	CATG	3 cut(s)	188, 241, 528
NspI	RCATGY	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	322
PkrI	GCNGC	4 cut(s)	170, 223, 316, 523
PleI	GAGTC	3 cut(s)	31, 66, 301
PpsI	GAGTC	3 cut(s)	31, 66, 301
PspEI	GGTNACC	1 cut(s)	266
PsuI	RGATCY	2 cut(s)	73, 328
RseI	CAYNNNNRTG	2 cut(s)	206, 359
SaqAI	TTAA	2 cut(s)	372, 459
SatI	GCNGC	4 cut(s)	169, 222, 315, 522
Sau3AI	GATC	2 cut(s)	73, 328
SchI	GAGTC	3 cut(s)	32, 67, 302
SduI	GDGCHC	1 cut(s)	356
SetI	ASST	6 cut(s)	12, 33, 102, 117, 378, 444
SfaNI	GCATC	1 cut(s)	545
SmiMI	CAYNNNNRTG	2 cut(s)	206, 359
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	1 cut(s)	385
SsiI	CCGC	5 cut(s)	168, 221, 314, 368, 542
SspMI	CTAG	2 cut(s)	77, 101
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	26
TasI	AATT	1 cut(s)	385
TauI	GCSGC	3 cut(s)	171, 224, 317
TfiI	GAWTC	1 cut(s)	322
Tru1I	TTAA	2 cut(s)	372, 459
Tru9I	TTAA	2 cut(s)	372, 459
TseI	GCWGC	1 cut(s)	521
Vha464I	CTTAAG	1 cut(s)	458
XapI	RAATTY	1 cut(s)	385
XceI	RCATGY	1 cut(s)	528
XspI	CTAG	2 cut(s)	77, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.