Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Forward (+)

37618908 .. 37619222

Gene Structure 315 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG187600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCCACCACTTCCACCAATAGCTCATCATCACCATCTTCCGCCGCTAGCACGAGTAATTCGTCACTGCTCAATGGAGAAGCTATCGGTGGTGGAGTCGAAGCTGGCGAAGTTGCTTCCAAAGGAGAAGAGTCCGAAGAAGGAGGATCCAGGGTGTGGGCTGATGTTGAAGCTGGACTACGACGACGTTTTGAGTGCTTGGTCCGACAAAGCGTCGTCGTTTTCGGAGGATTTGCAGGGCGGCGCTGATGGAAACCATGTCTCTATATGTTCCATTACGGTGAAATTGGAACTTAGAATATTAACGAAAGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

104

Amino Acids

11.46

Weight (kDa)

7.01

Isoelectric Point (pI)

41.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	155
AciI	CCGC	3 cut(s)	41, 44, 240
AclWI	GGATC	2 cut(s)	140, 153
AfiI	CCNNNNNNNGG	1 cut(s)	155
AgsI	TTSAA	1 cut(s)	169
AhdI	GACNNNNNGTC	1 cut(s)	211
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	4 cut(s)	23, 82, 103, 172
AluI	AGCT	4 cut(s)	23, 82, 103, 172
Alw26I	GTCTC	1 cut(s)	265
AlwI	GGATC	2 cut(s)	140, 153
AspLEI	GCGC	1 cut(s)	245
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	23, 292
AsuNHI	GCTAGC	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	201
BamHI	GGATCC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	161, 193
BauI	CACGAG	1 cut(s)	51
BccI	CCATC	2 cut(s)	42, 242
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	265
BfaI	CTAG	2 cut(s)	47, 313
BfoI	RGCGCY	1 cut(s)	246
BisI	GCNGC	2 cut(s)	44, 241
BlsI	GCNGC	2 cut(s)	45, 242
Bme1390I	CCNGG	1 cut(s)	150
Bme18I	GGWCC	1 cut(s)	201
BmeRI	GACNNNNNGTC	1 cut(s)	211
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	147
BmrFI	CCNGG	1 cut(s)	150
BmtI	GCTAGC	1 cut(s)	50
BsaJI	CCNNGG	1 cut(s)	149
Bsc4I	CCNNNNNNNGG	1 cut(s)	155
BseBI	CCWGG	1 cut(s)	150
BseDI	CCNNGG	1 cut(s)	149
BseLI	CCNNNNNNNGG	1 cut(s)	155
BslI	CCNNNNNNNGG	1 cut(s)	155
BsmAI	GTCTC	1 cut(s)	265
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	3 cut(s)	41, 44, 240
BspLI	GGNNCC	1 cut(s)	147
BspOI	GCTAGC	1 cut(s)	50
BspPI	GGATC	2 cut(s)	140, 153
BssECI	CCNNGG	1 cut(s)	149
BssMI	GATC	1 cut(s)	145
BssSI	CACGAG	1 cut(s)	51
Bst2BI	CACGAG	1 cut(s)	51
Bst2UI	CCWGG	1 cut(s)	150
Bst4CI	ACNGT	1 cut(s)	280
Bst6I	CTCTTC	1 cut(s)	122
BstC8I	GCNNGC	2 cut(s)	48, 105
BstDEI	CTNAG	1 cut(s)	293
BstH2I	RGCGCY	1 cut(s)	246
BstHHI	GCGC	1 cut(s)	245
BstKTI	GATC	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	265
BstMBI	GATC	1 cut(s)	145
BstNI	CCWGG	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	148
BstX2I	RGATCY	1 cut(s)	145
BstYI	RGATCY	1 cut(s)	145
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	2 cut(s)	48, 105
CfoI	GCGC	1 cut(s)	245
Cfr13I	GGNCC	1 cut(s)	201
CseI	GACGC	1 cut(s)	201
CviAII	CATG	1 cut(s)	257
CviJI	RGCY	5 cut(s)	23, 82, 103, 160, 172
CviKI_1	RGCY	5 cut(s)	23, 82, 103, 160, 172
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
DriI	GACNNNNNGTC	1 cut(s)	211
Eam1104I	CTCTTC	1 cut(s)	122
Eam1105I	GACNNNNNGTC	1 cut(s)	211
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	30
Eco47I	GGWCC	1 cut(s)	201
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	1 cut(s)	260
FaiI	YATR	3 cut(s)	258, 266, 268
FatI	CATG	1 cut(s)	256
Fnu4HI	GCNGC	2 cut(s)	44, 241
Fsp4HI	GCNGC	2 cut(s)	44, 241
FspBI	CTAG	2 cut(s)	47, 313
GlaI	GCGC	1 cut(s)	244
GluI	GCNGC	2 cut(s)	44, 241
HaeII	RGCGCY	1 cut(s)	246
HgaI	GACGC	1 cut(s)	201
HhaI	GCGC	1 cut(s)	245
Hin1II	CATG	1 cut(s)	260
Hin6I	GCGC	1 cut(s)	243
HinP1I	GCGC	1 cut(s)	243
HinfI	GANTC	2 cut(s)	95, 130
HphI	GGTGA	2 cut(s)	23, 292
Hpy188I	TCNGA	3 cut(s)	135, 205, 226
Hpy99I	CGWCG	4 cut(s)	185, 188, 217, 220
HpyAV	CCTTC	1 cut(s)	133
HpyCH4III	ACNGT	1 cut(s)	280
HpyCH4IV	ACGT	1 cut(s)	186
HpyCH4V	TGCA	1 cut(s)	235
HpyF3I	CTNAG	1 cut(s)	293
HpySE526I	ACGT	1 cut(s)	186
Hsp92II	CATG	1 cut(s)	260
HspAI	GCGC	1 cut(s)	243
Kzo9I	GATC	1 cut(s)	145
LpnPI	CCDG	5 cut(s)	89, 135, 158, 162, 221
MaeI	CTAG	2 cut(s)	47, 313
MaeII	ACGT	1 cut(s)	186
MaeIII	GTNAC	1 cut(s)	62
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	3 cut(s)	29, 139, 148
MflI	RGATCY	1 cut(s)	145
MluCI	AATT	2 cut(s)	57, 284
MlyI	GAGTC	2 cut(s)	104, 139
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	2 cut(s)	136, 220
MseI	TTAA	1 cut(s)	302
MslI	CAYNNNNRTG	1 cut(s)	278
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
NdeII	GATC	1 cut(s)	145
NheI	GCTAGC	1 cut(s)	46
NlaIII	CATG	1 cut(s)	260
NlaIV	GGNNCC	1 cut(s)	147
NmuCI	GTSAC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	58, 104
PflMI	CCANNNNNTGG	1 cut(s)	155
PkrI	GCNGC	2 cut(s)	45, 242
PleI	GAGTC	2 cut(s)	103, 138
PpsI	GAGTC	2 cut(s)	103, 138
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PspN4I	GGNNCC	1 cut(s)	147
PspPI	GGNCC	1 cut(s)	201
PsuI	RGATCY	1 cut(s)	145
RseI	CAYNNNNRTG	1 cut(s)	278
SaqAI	TTAA	1 cut(s)	302
SatI	GCNGC	2 cut(s)	44, 241
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	2 cut(s)	104, 139
ScrFI	CCNGG	1 cut(s)	150
SetI	ASST	5 cut(s)	25, 84, 105, 174, 189
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	278
Sse9I	AATT	2 cut(s)	57, 284
SsiI	CCGC	3 cut(s)	41, 44, 240
SspI	AATATT	1 cut(s)	300
SspMI	CTAG	2 cut(s)	47, 313
StyD4I	CCNGG	1 cut(s)	148
TaaI	ACNGT	1 cut(s)	280
TaiI	ACGT	1 cut(s)	189
TaqI	TCGA	1 cut(s)	98
TasI	AATT	2 cut(s)	57, 284
TauI	GCSGC	2 cut(s)	46, 243
Tru1I	TTAA	1 cut(s)	302
Tru9I	TTAA	1 cut(s)	302
TscAI	CASTG	1 cut(s)	71
TseFI	GTSAC	1 cut(s)	62
Tsp45I	GTSAC	1 cut(s)	62
TspRI	CASTG	1 cut(s)	71
Van91I	CCANNNNNTGG	1 cut(s)	155
VpaK11BI	GGWCC	1 cut(s)	201
XspI	CTAG	2 cut(s)	47, 313

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.