Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0006426

Physical Location & Seq

Genomic Coordinates Forward (+)

6446809 .. 6447018

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG082400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

ATGGAGAAGCTATCAGTGGTGGAGTCGAAGCTGGCGAAGTTGCTTCCAAAGGAGAAGAGTCTAAATAAGGAGGATCCAGGGTGTGGGCTGATGTTGAAGCTAGACTACGACGACGTTTTGAGTGCTTGGTCAGACCAAGAGTCGTCGTTTTGGAGGATTTGCAGGGCGGCGCTGATGGAAACCATGTCTCTATATGTTCCATTACGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006605 GO:0006810 GO:0006886 GO:0008104 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0015031 GO:0015833 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0033036 GO:0033365 GO:0034613 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045036 GO:0045184 GO:0046907 GO:0050789 GO:0050794 GO:0051171 GO:0051179 GO:0051234 GO:0051252 GO:0051641 GO:0051649 GO:0060255 GO:0065007 GO:0070727 GO:0071702 GO:0071705 GO:0072594 GO:0072596 GO:0072598 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT

Protein Analysis

69

Amino Acids

7.91

Weight (kDa)

5.3

Isoelectric Point (pI)

39.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006426)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0408691
rosa_laevigata	RLG00000003120 RLG00000007481 RLG00000023669
rosa_multiflora	Rmu_sc0004465.1_g000035 Rmu_sc0008178.1_g000001 Rmu_sc0011205.1_g000001
rosa_samantha	Rh1BG007500 Rh1CG013300 Rh1DG008900 Rh1DG187600 Rh2AG226300 Rh2AG399500 Rh2CG229400 Rh3AG181200 Rh3BG082400 Rh3CG204700 Rh3CG275900 Rh3DG354200 Rh5BG257500 Rh5BG483900 Rh5CG147800 Rh5CG423000 Rh5CG508500 Rh6BG193200 Rh7BG133800 Rh7DG092600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	83
AciI	CCGC	1 cut(s)	167
AclWI	GGATC	2 cut(s)	68, 81
AfiI	CCNNNNNNNGG	1 cut(s)	83
AgsI	TTSAA	1 cut(s)	97
AhdI	GACNNNNNGTC	1 cut(s)	139
AjnI	CCWGG	1 cut(s)	76
AluBI	AGCT	3 cut(s)	10, 31, 100
AluI	AGCT	3 cut(s)	10, 31, 100
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	68, 81
AspLEI	GCGC	1 cut(s)	172
BamHI	GGATCC	1 cut(s)	73
BarI	GAAGNNNNNNTAC	2 cut(s)	89, 121
BccI	CCATC	1 cut(s)	169
BciT130I	CCWGG	1 cut(s)	78
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	1 cut(s)	101
BfoI	RGCGCY	1 cut(s)	173
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	1 cut(s)	78
BmeRI	GACNNNNNGTC	1 cut(s)	139
BmiI	GGNNCC	1 cut(s)	75
BmrFI	CCNGG	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	77
Bsc4I	CCNNNNNNNGG	1 cut(s)	83
BseBI	CCWGG	1 cut(s)	78
BseDI	CCNNGG	1 cut(s)	77
BseLI	CCNNNNNNNGG	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	83
BsmAI	GTCTC	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	73
BspACI	CCGC	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	75
BspPI	GGATC	2 cut(s)	68, 81
BssECI	CCNNGG	1 cut(s)	77
BssMI	GATC	1 cut(s)	73
Bst2UI	CCWGG	1 cut(s)	78
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	50
BstC8I	GCNNGC	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	1 cut(s)	172
BstKTI	GATC	1 cut(s)	76
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	1 cut(s)	73
BstNI	CCWGG	1 cut(s)	78
BstSCI	CCNGG	1 cut(s)	76
BstX2I	RGATCY	1 cut(s)	73
BstYI	RGATCY	1 cut(s)	73
BtsIMutI	CAGTG	1 cut(s)	21
Cac8I	GCNNGC	1 cut(s)	33
CfoI	GCGC	1 cut(s)	172
CviAII	CATG	1 cut(s)	184
CviJI	RGCY	4 cut(s)	10, 31, 88, 100
CviKI_1	RGCY	4 cut(s)	10, 31, 88, 100
DpnI	GATC	1 cut(s)	75
DpnII	GATC	1 cut(s)	73
DriI	GACNNNNNGTC	1 cut(s)	139
Eam1104I	CTCTTC	1 cut(s)	50
Eam1105I	GACNNNNNGTC	1 cut(s)	139
EarI	CTCTTC	1 cut(s)	50
EcoRII	CCWGG	1 cut(s)	76
FaeI	CATG	1 cut(s)	187
FaiI	YATR	3 cut(s)	185, 193, 195
FatI	CATG	1 cut(s)	183
Fnu4HI	GCNGC	1 cut(s)	168
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	101
GlaI	GCGC	1 cut(s)	171
GluI	GCNGC	1 cut(s)	168
HaeII	RGCGCY	1 cut(s)	173
HhaI	GCGC	1 cut(s)	172
Hin1II	CATG	1 cut(s)	187
Hin6I	GCGC	1 cut(s)	170
HinP1I	GCGC	1 cut(s)	170
HinfI	GANTC	3 cut(s)	23, 58, 140
Hpy188I	TCNGA	1 cut(s)	133
Hpy99I	CGWCG	3 cut(s)	113, 116, 148
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4IV	ACGT	1 cut(s)	114
HpyCH4V	TGCA	1 cut(s)	162
HpySE526I	ACGT	1 cut(s)	114
Hsp92II	CATG	1 cut(s)	187
HspAI	GCGC	1 cut(s)	170
Kzo9I	GATC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	17, 63, 90, 148
MaeI	CTAG	1 cut(s)	101
MaeII	ACGT	1 cut(s)	114
MalI	GATC	1 cut(s)	75
MboI	GATC	1 cut(s)	73
MboII	GAAGA	1 cut(s)	67
MflI	RGATCY	1 cut(s)	73
MlyI	GAGTC	3 cut(s)	32, 67, 149
MnlI	CCTC	2 cut(s)	64, 147
MslI	CAYNNNNRTG	1 cut(s)	205
MspR9I	CCNGG	1 cut(s)	78
MvaI	CCWGG	1 cut(s)	78
NdeII	GATC	1 cut(s)	73
NlaIII	CATG	1 cut(s)	187
NlaIV	GGNNCC	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	83
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	3 cut(s)	31, 66, 148
PpsI	GAGTC	3 cut(s)	31, 66, 148
Psp6I	CCWGG	1 cut(s)	76
PspGI	CCWGG	1 cut(s)	76
PspN4I	GGNNCC	1 cut(s)	75
PsuI	RGATCY	1 cut(s)	73
RseI	CAYNNNNRTG	1 cut(s)	205
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	73
SchI	GAGTC	3 cut(s)	32, 67, 149
ScrFI	CCNGG	1 cut(s)	78
SetI	ASST	4 cut(s)	12, 33, 102, 117
SgeI	CNNG	8 cut(s)	44, 89, 90, 113, 138, 149, 175, 196
SmiMI	CAYNNNNRTG	1 cut(s)	205
SsiI	CCGC	1 cut(s)	167
SspMI	CTAG	1 cut(s)	101
StyD4I	CCNGG	1 cut(s)	76
TaaI	ACNGT	1 cut(s)	207
TaiI	ACGT	1 cut(s)	117
TaqI	TCGA	1 cut(s)	26
TauI	GCSGC	1 cut(s)	170
TscAI	CASTG	1 cut(s)	21
TspRI	CASTG	1 cut(s)	21
Van91I	CCANNNNNTGG	1 cut(s)	83
XspI	CTAG	1 cut(s)	101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.