Rmu_sc0004595.1_g000016

Fringe-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004595.1
OG0006847
Physical Location & Seq
Reverse (-)
76977 .. 77876
900 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 900 bp
atgcgattgaggtcgtctgcaccaaaggaccttgttgctgatactgcaatgtatgtgggtgatgggaaagttgtgggttttgatgggttggctaagcaagctcttcaagttgtgcatagggttaatgtgggaggtcataaagtgacgccctttaatgatagcctgtggaggacttggattagtgatgaggagtttttcggttcgggtttcgggtggaggattaagtatcaggttggaggggctagccgggaagttggtccggataatgtgtacaacactgcaagattgattcgtagtacgaatgcttcgattccaaatgtgaatatgacatgggtgtttcctgcagtgggtgggtataagtatttggttcggatgcatttctgtgattttgctagtacttcgcttgtttatgtgaatgggaatttggcatatgaagatttggatttgtctaaggctgcaaattatatgttggcttctccgttctatgcggattttgtggttgatggagatgactcagattctttgactgtaagtttaggaccatcgaacgccagcgtgccatacgccgtcgatggtatattgaatggtattgagatcatgaagttgaataactcagttgggagtcttgatggcgagcattgtgcagagtgggttttgaggagttggccagagggacatgttagtctcttggttcctctagttgctgctgcttgtgtgctgctaagcttatctatggttatgcgtaggaggatcatgaggaagaaggaatctgtggcatggacgaaactgcctgtggatgtttcagaagttaatgccaagcatggaaatatacatcaatcggataaattggaaagcacttgcttacgttgtggaaatatacatcaatcggtcaatgaatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF604 Malectin_like

Protein Analysis

299

Amino Acids

32.84

Weight (kDa)

6.24

Isoelectric Point (pI)

42.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Malectin_like PF12819 32 - 201 4.5e-12 Malectin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 681
AccIII TCCGGA 1 cut(s) 259
AciI CCGC 1 cut(s) 488
AclWI GGATC 1 cut(s) 758
AcoI YGGCCR 1 cut(s) 665
AcsI RAATTY 1 cut(s) 421
AcyI GRCGYC 1 cut(s) 146
AfaI GTAC 3 cut(s) 272, 298, 397
AfiI CCNNNNNNNGG 1 cut(s) 347
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 3 cut(s) 107, 583, 607
AjuI GAANNNNNNNTTGG 2 cut(s) 407, 439
AluBI AGCT 2 cut(s) 101, 726
AluI AGCT 2 cut(s) 101, 726
Alw26I GTCTC 1 cut(s) 689
AlwI GGATC 1 cut(s) 758
Aor13HI TCCGGA 1 cut(s) 259
AoxI GGCC 1 cut(s) 665
ApeKI GCWGC 4 cut(s) 455, 704, 707, 718
ApoI RAATTY 1 cut(s) 421
AspS9I GGNCC 3 cut(s) 28, 257, 539
AsuC2I CCSGG 1 cut(s) 248
AsuHPI GGTGA 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 242
AvaII GGWCC 3 cut(s) 28, 257, 539
BalI TGGCCA 1 cut(s) 667
BarI GAAGNNNNNNTAC 2 cut(s) 289, 321
BbvI GCAGC 4 cut(s) 442, 691, 694, 705
BccI CCATC 6 cut(s) 56, 77, 497, 550, 566, 623
BceAI ACGGC 1 cut(s) 551
BcgI CGANNNNNNTGC 2 cut(s) 623, 657
BcnI CCSGG 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 689
BfaI CTAG 3 cut(s) 243, 393, 698
BfmI CTRYAG 1 cut(s) 342
BisI GCNGC 4 cut(s) 456, 705, 708, 719
BlpI GCTNAGC 2 cut(s) 93, 722
BlsI GCNGC 4 cut(s) 457, 706, 709, 720
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 1 cut(s) 248
Bme18I GGWCC 3 cut(s) 28, 257, 539
BmgT120I GGNCC 3 cut(s) 28, 257, 539
BmiI GGNNCC 1 cut(s) 693
BmrFI CCNGG 1 cut(s) 248
BmsI GCATC 1 cut(s) 363
BmtI GCTAGC 1 cut(s) 246
Bpu1102I GCTNAGC 2 cut(s) 93, 722
BpuMI CCSGG 1 cut(s) 248
BsaHI GRCGYC 1 cut(s) 146
BsaWI WCCGGW 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 347
Bse3DI GCAATG 1 cut(s) 54
BseAI TCCGGA 1 cut(s) 259
BseGI GGATG 2 cut(s) 378, 802
BseLI CCNNNNNNNGG 1 cut(s) 347
BseMI GCAATG 1 cut(s) 54
BseMII CTCAG 2 cut(s) 528, 627
BseRI GAGGAG 2 cut(s) 203, 673
BseXI GCAGC 4 cut(s) 442, 691, 694, 705
BsgI GTGCAG 1 cut(s) 663
BshFI GGCC 1 cut(s) 667
BsiSI CCGG 2 cut(s) 247, 260
BslFI GGGAC 1 cut(s) 687
BslI CCNNNNNNNGG 1 cut(s) 347
BsmAI GTCTC 1 cut(s) 689
BsmFI GGGAC 1 cut(s) 687
BsmI GAATGC 1 cut(s) 307
BsnI GGCC 1 cut(s) 667
Bsp13I TCCGGA 1 cut(s) 259
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 2 cut(s) 594, 750
Bsp1720I GCTNAGC 2 cut(s) 93, 722
BspACI CCGC 1 cut(s) 488
BspANI GGCC 1 cut(s) 667
BspCNI CTCAG 2 cut(s) 527, 626
BspEI TCCGGA 1 cut(s) 259
BspHI TCATGA 2 cut(s) 597, 753
BspLI GGNNCC 1 cut(s) 693
BspMAI CTGCAG 1 cut(s) 346
BspOI GCTAGC 1 cut(s) 246
BspPI GGATC 1 cut(s) 758
BspQI GCTCTTC 1 cut(s) 108
BsrDI GCAATG 1 cut(s) 54
BsrGI TGTACA 1 cut(s) 270
BssMI GATC 2 cut(s) 594, 750
BssNI GRCGYC 1 cut(s) 146
Bst4CI ACNGT 1 cut(s) 529
Bst6I CTCTTC 1 cut(s) 108
BstACI GRCGYC 1 cut(s) 146
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 5 cut(s) 99, 244, 553, 557, 635
BstDEI CTNAG 5 cut(s) 93, 450, 514, 613, 722
BstF5I GGATG 2 cut(s) 378, 802
BstKTI GATC 2 cut(s) 597, 753
BstMAI GTCTC 1 cut(s) 689
BstMBI GATC 2 cut(s) 594, 750
BstMWI GCNNNNNNNGC 2 cut(s) 44, 98
BstNSI RCATGY 1 cut(s) 680
BstSCI CCNGG 1 cut(s) 246
BstSFI CTRYAG 1 cut(s) 342
BstV1I GCAGC 4 cut(s) 442, 691, 694, 705
BsuRI GGCC 1 cut(s) 667
BtsCI GGATG 2 cut(s) 378, 802
BtsI GCAGTG 2 cut(s) 276, 351
BtsIMutI CAGTG 2 cut(s) 276, 351
Cac8I GCNNGC 5 cut(s) 99, 244, 553, 557, 635
CciI TCATGA 2 cut(s) 597, 753
Cfr13I GGNCC 3 cut(s) 28, 257, 539
CseI GACGC 1 cut(s) 154
Csp6I GTAC 3 cut(s) 271, 297, 396
CspCI CAANNNNNGTGG 2 cut(s) 36, 71
CviAII CATG 6 cut(s) 330, 598, 677, 754, 777, 821
CviJI RGCY 9 cut(s) 92, 101, 162, 242, 246, 455, 473, 667, 726
CviKI_1 RGCY 9 cut(s) 92, 101, 162, 242, 246, 455, 473, 667, 726
CviQI GTAC 3 cut(s) 271, 297, 396
DdeI CTNAG 5 cut(s) 93, 450, 514, 613, 722
DpnI GATC 2 cut(s) 596, 752
DpnII GATC 2 cut(s) 594, 750
DrdI GACNNNNNNGTC 1 cut(s) 681
DseDI GACNNNNNNGTC 1 cut(s) 681
EaeI YGGCCR 1 cut(s) 665
Eam1104I CTCTTC 1 cut(s) 108
EarI CTCTTC 1 cut(s) 108
Eco47I GGWCC 3 cut(s) 28, 257, 539
EcoO109I RGGNCCY 1 cut(s) 28
EcoT22I ATGCAT 1 cut(s) 378
FaeI CATG 6 cut(s) 333, 601, 680, 757, 780, 824
FaqI GGGAC 1 cut(s) 687
FatI CATG 6 cut(s) 329, 597, 676, 753, 776, 820
FauNDI CATATG 1 cut(s) 430
Fnu4HI GCNGC 4 cut(s) 456, 705, 708, 719
FokI GGATG 2 cut(s) 385, 809
Fsp4HI GCNGC 4 cut(s) 456, 705, 708, 719
FspBI CTAG 3 cut(s) 243, 393, 698
GluI GCNGC 4 cut(s) 456, 705, 708, 719
HaeIII GGCC 1 cut(s) 667
HapII CCGG 2 cut(s) 247, 260
HgaI GACGC 1 cut(s) 154
Hin1I GRCGYC 1 cut(s) 146
Hin1II CATG 6 cut(s) 333, 601, 680, 757, 780, 824
HindIII AAGCTT 1 cut(s) 724
HinfI GANTC 6 cut(s) 289, 310, 512, 518, 622, 767
HpaII CCGG 2 cut(s) 247, 260
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 271
Hpy188I TCNGA 4 cut(s) 372, 517, 805, 841
Hpy188III TCNNGA 4 cut(s) 260, 598, 626, 754
Hpy8I GTNNAC 1 cut(s) 271
Hpy99I CGWCG 1 cut(s) 572
HpyAV CCTTC 1 cut(s) 757
HpyCH4III ACNGT 1 cut(s) 529
HpyCH4IV ACGT 1 cut(s) 865
HpyCH4V TGCA 8 cut(s) 20, 47, 115, 281, 344, 376, 458, 644
HpyF10VI GCNNNNNNNGC 2 cut(s) 44, 98
HpyF3I CTNAG 5 cut(s) 93, 450, 514, 613, 722
HpySE526I ACGT 1 cut(s) 865
Hsp92I GRCGYC 1 cut(s) 146
Hsp92II CATG 6 cut(s) 333, 601, 680, 757, 780, 824
Kpn2I TCCGGA 1 cut(s) 259
Kzo9I GATC 2 cut(s) 594, 750
LguI GCTCTTC 1 cut(s) 108
LpnPI CCDG 8 cut(s) 176, 215, 260, 273, 354, 565, 681, 804
Lsp1109I GCAGC 4 cut(s) 442, 691, 694, 705
LweI GCATC 1 cut(s) 363
MaeI CTAG 3 cut(s) 243, 393, 698
MaeII ACGT 1 cut(s) 865
MaeIII GTNAC 1 cut(s) 142
MalI GATC 2 cut(s) 596, 752
MboI GATC 2 cut(s) 594, 750
MboII GAAGA 3 cut(s) 95, 446, 772
MlsI TGGCCA 1 cut(s) 667
MluCI AATT 3 cut(s) 421, 460, 845
MluNI TGGCCA 1 cut(s) 667
MlyI GAGTC 2 cut(s) 506, 631
MmeI TCCRAC 1 cut(s) 214
Mox20I TGGCCA 1 cut(s) 667
Mph1103I ATGCAT 1 cut(s) 378
MroI TCCGGA 1 cut(s) 259
MscI TGGCCA 1 cut(s) 667
MseI TTAA 4 cut(s) 123, 153, 222, 810
MslI CAYNNNNRTG 1 cut(s) 381
Msp20I TGGCCA 1 cut(s) 667
MspI CCGG 2 cut(s) 247, 260
MspR9I CCNGG 1 cut(s) 248
Mva1269I GAATGC 1 cut(s) 307
MwoI GCNNNNNNNGC 2 cut(s) 44, 98
NciI CCSGG 1 cut(s) 248
NdeI CATATG 1 cut(s) 430
NdeII GATC 2 cut(s) 594, 750
NheI GCTAGC 1 cut(s) 242
NlaIII CATG 6 cut(s) 333, 601, 680, 757, 780, 824
NlaIV GGNNCC 1 cut(s) 693
NmuCI GTSAC 1 cut(s) 142
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 1 cut(s) 680
PagI TCATGA 2 cut(s) 597, 753
PciI ACATGT 1 cut(s) 676
PciSI GCTCTTC 1 cut(s) 108
PcsI WCGNNNNNNNCGW 1 cut(s) 305
PctI GAATGC 1 cut(s) 307
PfeI GAWTC 4 cut(s) 289, 310, 518, 767
PkrI GCNGC 4 cut(s) 457, 706, 709, 720
PleI GAGTC 2 cut(s) 506, 630
PpsI GAGTC 2 cut(s) 506, 630
PpuMI RGGWCCY 1 cut(s) 28
PscI ACATGT 1 cut(s) 676
Psp5II RGGWCCY 1 cut(s) 28
PspN4I GGNNCC 1 cut(s) 693
PspPI GGNCC 3 cut(s) 28, 257, 539
PspPPI RGGWCCY 1 cut(s) 28
PstI CTGCAG 1 cut(s) 346
RsaI GTAC 3 cut(s) 272, 298, 397
RsaNI GTAC 3 cut(s) 271, 297, 396
RseI CAYNNNNRTG 1 cut(s) 381
SapI GCTCTTC 1 cut(s) 108
SaqAI TTAA 4 cut(s) 123, 153, 222, 810
SatI GCNGC 4 cut(s) 456, 705, 708, 719
Sau3AI GATC 2 cut(s) 594, 750
Sau96I GGNCC 3 cut(s) 28, 257, 539
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 2 cut(s) 506, 631
ScrFI CCNGG 1 cut(s) 248
SetI ASST 7 cut(s) 14, 33, 103, 136, 234, 728, 868
SfaNI GCATC 1 cut(s) 363
SfcI CTRYAG 1 cut(s) 342
SinI GGWCC 3 cut(s) 28, 257, 539
SmiMI CAYNNNNRTG 1 cut(s) 381
Sse9I AATT 3 cut(s) 421, 460, 845
SsiI CCGC 1 cut(s) 488
SspMI CTAG 3 cut(s) 243, 393, 698
StyD4I CCNGG 1 cut(s) 246
TaaI ACNGT 1 cut(s) 529
TaiI ACGT 1 cut(s) 868
TaqI TCGA 3 cut(s) 308, 545, 570
TaqII GACCGA 1 cut(s) 877
TasI AATT 3 cut(s) 421, 460, 845
TatI WGTACW 2 cut(s) 270, 395
TfiI GAWTC 4 cut(s) 289, 310, 518, 767
Tru1I TTAA 4 cut(s) 123, 153, 222, 810
Tru9I TTAA 4 cut(s) 123, 153, 222, 810
TscAI CASTG 2 cut(s) 283, 351
TseFI GTSAC 1 cut(s) 142
TseI GCWGC 4 cut(s) 455, 704, 707, 718
Tsp45I GTSAC 1 cut(s) 142
TspDTI ATGAA 2 cut(s) 447, 614
TspGWI ACGGA 1 cut(s) 468
TspRI CASTG 2 cut(s) 283, 351
VpaK11BI GGWCC 3 cut(s) 28, 257, 539
XapI RAATTY 1 cut(s) 421
XceI RCATGY 1 cut(s) 680
XspI CTAG 3 cut(s) 243, 393, 698
ZrmI AGTACT 1 cut(s) 397
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.