Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004824.1

Orthogroup ID

OG0003593

Physical Location & Seq

Genomic Coordinates Forward (+)

38 .. 3026

Gene Structure 2989 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

atggtaagcttggtgtctcgctcttctcaaaacaccaatcaggctgtcacagtctcaacaaagaaaattaaaggtctgataagatcagaagtgcgttcatcacagaagggccatgtatccatgactacttctgctatagcaaagaaacaaactgtctcccgagtgcctctttctgagaagaaagtcaatgggcctctttcttccaagaaagcaaatagtagtatgacttccgcattgaaaggaaggaaactatttgatgaaagaagtcgtttgaccaaatcgatgaaggcaagtgctatgtcagatattgtctcaaccattgaaacttctgtagctgataaggaagagaccatttcaaatgttcctgaaggaaccgagcagcttaaatctgaagagtgtaattcaaatgttcctgaaggaaccgagcagcttaaatctgagaatccatcatcaaatgctttgaatcccgtagaacctgcatctcttgtggaaaaggacgaattattatcagatgatccaaagcatgcagaacattctttgaaggaagaaaaggagcatttgctattggatgatccaaagcatgttgaagataattcaattgcagaaaaggatatttctgtgaatggtgatgtccctactgaggaagttaatcctagtgacaatagcagtagcagatctgcattggctttagttgaagaagttcatgacatggagaaggaaaacaataacttcccagacaatgaagatacatcacctccaatcagtgcacgattacaagaattggcattaaaaatgaaatcactttgttcttcttcaactccattgtgcattacgatgccagaggagaaagatacttcatccaataacttcctctgtactgacatcatggaatcaaacgccccagttgccagtcaggatataagccacaatgatagttgggaggctgcaaatgtcaacaacatcatggaaccaaagactccagttgtggaaccaaaaaccccagttgctaatcaggatataaaacacaatgacagatgggaggttgcaaatgtcaacagcccttgggaaacattgagtgtccgcagtactggtgtcaagcaatctcttgttcaagaatatcttagcttcttaaacaccgctagcaaggaagatctgaaaagattaaagggaattggagagaaaagagcaacatacatacttgattgccgtgaagaaactcctgagcccttcaagagtcttgatgatttacaagacattggactttcagtgaagcagattaagaacttgatgaagaaagcaggaggagggcttttcgattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000070 GO:0000278 GO:0000280 GO:0000775 GO:0000776 GO:0000819 GO:0002376 GO:0002478 GO:0002495 GO:0002504 GO:0003674 GO:0003676 GO:0003677 GO:0003774 GO:0003777 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005819 GO:0005829 GO:0005856 GO:0005871 GO:0005875 GO:0006810 GO:0006890 GO:0006928 GO:0006996 GO:0007017 GO:0007018 GO:0007049 GO:0007059 GO:0007062 GO:0007080 GO:0008104 GO:0008150 GO:0008574 GO:0009987 GO:0015630 GO:0016043 GO:0016192 GO:0016462 GO:0016604 GO:0016607 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019882 GO:0019884 GO:0019886 GO:0022402 GO:0030705 GO:0031974 GO:0031981 GO:0032991 GO:0033036 GO:0042623 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046907 GO:0048002 GO:0048193 GO:0048285 GO:0050000 GO:0051179 GO:0051234 GO:0051276 GO:0051303 GO:0051310 GO:0051640 GO:0051641 GO:0051649 GO:0051656 GO:0070013 GO:0071840 GO:0072686 GO:0097159 GO:0098687 GO:0098813 GO:0140014 GO:1901363 GO:1903047 GO:1990939

KEGG Pathways

Metabolic & Signaling

ko04914 map04914

Pfam Domains

Protein Families

HHH_3 Kinesin

Protein Analysis

439

Amino Acids

48.22

Weight (kDa)

5.12

Isoelectric Point (pI)

55.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_3	PF12836	377 - 419	7.4e-08	Helix-hairpin-helix motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G23910 AT5G23910
fragaria_vesca	FvH4_3g27740 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790 FvH4_7g29790
malus_domestica	MD01G1204800.v1.1 MD07G1272100.v1.1
prunus_persica	Prupe.2G297200_v2.0.a1
pyrus_communis	pycom01g21440
rosa_chinensis	RchiOBHm_Chr1g0377791
rosa_laevigata	RLG00000019998 RLG00000026498
rosa_multiflora	Rmu_sc0004824.1_g000001 Rmu_sc0005758.1_g000004 Rmu_sc0024583.1_g000001 Rmu_sc0028648.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281060
rosa_rugosa	Rorug01G0405100 Rorug02G0377300
rosa_samantha	Rh1AG427300 Rh1BG382000 Rh1CG395900 Rh1DG413000 Rh2AG430200 Rh2BG439200 Rh2CG415800 Rh2DG449200
rosa_wichuraiana	Rw1G037130 Rw2G035140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	484
AciI	CCGC	3 cut(s)	231, 1081, 1137
AclWI	GGATC	2 cut(s)	509, 566
AcuI	CTGAAG	3 cut(s)	387, 411, 435
AfaI	GTAC	2 cut(s)	877, 1087
AfiI	CCNNNNNNNGG	1 cut(s)	640
AluBI	AGCT	5 cut(s)	9, 335, 382, 430, 1125
AluI	AGCT	5 cut(s)	9, 335, 382, 430, 1125
Alw21I	GWGCWC	1 cut(s)	769
Alw26I	GTCTC	5 cut(s)	21, 58, 160, 316, 341
Alw44I	GTGCAC	1 cut(s)	765
AlwI	GGATC	2 cut(s)	509, 566
Ama87I	CYCGRG	1 cut(s)	159
AoxI	GGCC	2 cut(s)	109, 191
ApaLI	GTGCAC	1 cut(s)	765
ApeKI	GCWGC	3 cut(s)	379, 427, 944
Asp700I	GAANNNNTTC	1 cut(s)	699
AspS9I	GGNCC	2 cut(s)	109, 191
AsuHPI	GGTGA	2 cut(s)	638, 744
AsuNHI	GCTAGC	1 cut(s)	1139
AvaI	CYCGRG	1 cut(s)	159
BaeGI	GKGCMC	1 cut(s)	769
BanII	GRGCYC	1 cut(s)	1227
BarI	GAAGNNNNNNTAC	2 cut(s)	211, 243
Bbv12I	GWGCWC	1 cut(s)	769
BbvI	GCAGC	3 cut(s)	391, 439, 931
BccI	CCATC	2 cut(s)	454, 1029
BceAI	ACGGC	1 cut(s)	1191
BciVI	GTATCC	1 cut(s)	127
BcoDI	GTCTC	5 cut(s)	21, 58, 160, 316, 341
BfaI	CTAG	2 cut(s)	654, 1140
BfmI	CTRYAG	2 cut(s)	135, 330
BfuAI	ACCTGC	1 cut(s)	484
BfuI	GTATCC	1 cut(s)	127
BglII	AGATCT	2 cut(s)	674, 1150
BisI	GCNGC	3 cut(s)	380, 428, 945
BlsI	GCNGC	3 cut(s)	381, 429, 946
BmcAI	AGTACT	1 cut(s)	1087
BmeT110I	CYCGRG	1 cut(s)	159
BmgT120I	GGNCC	2 cut(s)	109, 191
BmiI	GGNNCC	4 cut(s)	373, 421, 969, 990
BmrI	ACTGGG	2 cut(s)	896, 995
BmsI	GCATC	2 cut(s)	488, 825
BmtI	GCTAGC	1 cut(s)	1143
BmuI	ACTGGG	2 cut(s)	896, 995
BpmI	CTGGAG	1 cut(s)	963
Bpu10I	CCTNAGC	1 cut(s)	1221
Bsa29I	ATCGAT	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	341
BsaJI	CCNNGG	1 cut(s)	1061
BsaXI	ACNNNNNCTCC	2 cut(s)	739, 769
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse1I	ACTGG	5 cut(s)	902, 909, 980, 1001, 1093
BseCI	ATCGAT	1 cut(s)	281
BseDI	CCNNGG	1 cut(s)	1061
BseGI	GGATG	2 cut(s)	574, 857
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMII	CTCAG	4 cut(s)	165, 429, 630, 1212
BseNI	ACTGG	5 cut(s)	902, 909, 980, 1001, 1093
BseRI	GAGGAG	2 cut(s)	857, 1317
BseSI	GKGCMC	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	391, 439, 931
BshFI	GGCC	2 cut(s)	111, 193
BshVI	ATCGAT	1 cut(s)	281
BsiHKAI	GWGCWC	1 cut(s)	769
BsiHKCI	CYCGRG	1 cut(s)	159
BslFI	GGGAC	1 cut(s)	617
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	5 cut(s)	21, 58, 160, 316, 341
BsmFI	GGGAC	1 cut(s)	617
BsnI	GGCC	2 cut(s)	111, 193
Bso31I	GGTCTC	1 cut(s)	341
BsoBI	CYCGRG	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	769, 1227
Bsp143I	GATC	5 cut(s)	83, 514, 571, 674, 1150
BspACI	CCGC	3 cut(s)	231, 1081, 1137
BspANI	GGCC	2 cut(s)	111, 193
BspCNI	CTCAG	4 cut(s)	166, 430, 631, 1213
BspDI	ATCGAT	1 cut(s)	281
BspHI	TCATGA	1 cut(s)	703
BspLI	GGNNCC	4 cut(s)	373, 421, 969, 990
BspMI	ACCTGC	1 cut(s)	484
BspOI	GCTAGC	1 cut(s)	1143
BspPI	GGATC	2 cut(s)	509, 566
BspQI	GCTCTTC	1 cut(s)	28
BspTNI	GGTCTC	1 cut(s)	341
BsrI	ACTGG	5 cut(s)	902, 909, 980, 1001, 1093
BssECI	CCNNGG	1 cut(s)	1061
BssMI	GATC	5 cut(s)	83, 514, 571, 674, 1150
BssT1I	CCWWGG	1 cut(s)	1061
Bst4CI	ACNGT	2 cut(s)	52, 154
Bst6I	CTCTTC	3 cut(s)	28, 339, 387
BstC8I	GCNNGC	2 cut(s)	525, 1141
BstDEI	CTNAG	5 cut(s)	174, 438, 639, 1121, 1221
BstF5I	GGATG	2 cut(s)	574, 857
BstKTI	GATC	5 cut(s)	86, 517, 574, 677, 1153
BstMAI	GTCTC	5 cut(s)	21, 58, 160, 316, 341
BstMBI	GATC	5 cut(s)	83, 514, 571, 674, 1150
BstMWI	GCNNNNNNNGC	1 cut(s)	905
BstNSI	RCATGY	2 cut(s)	527, 584
BstSFI	CTRYAG	2 cut(s)	135, 330
BstSLI	GKGCMC	1 cut(s)	769
BstV1I	GCAGC	3 cut(s)	391, 439, 931
BstX2I	RGATCY	2 cut(s)	674, 1150
BstYI	RGATCY	2 cut(s)	674, 1150
Bsu15I	ATCGAT	1 cut(s)	281
BsuI	GTATCC	1 cut(s)	127
BsuRI	GGCC	2 cut(s)	111, 193
BsuTUI	ATCGAT	1 cut(s)	281
BtsCI	GGATG	2 cut(s)	574, 857
BtsIMutI	CAGTG	2 cut(s)	769, 1272
BveI	ACCTGC	1 cut(s)	484
Cac8I	GCNNGC	2 cut(s)	525, 1141
CciI	TCATGA	1 cut(s)	703
Cfr13I	GGNCC	2 cut(s)	109, 191
ClaI	ATCGAT	1 cut(s)	281
Csp6I	GTAC	2 cut(s)	876, 1086
CviAII	CATG	8 cut(s)	113, 121, 524, 581, 704, 709, 886, 964
CviQI	GTAC	2 cut(s)	876, 1086
DdeI	CTNAG	5 cut(s)	174, 438, 639, 1121, 1221
DpnI	GATC	5 cut(s)	85, 516, 573, 676, 1152
DpnII	GATC	5 cut(s)	83, 514, 571, 674, 1150
Eam1104I	CTCTTC	3 cut(s)	28, 339, 387
EarI	CTCTTC	3 cut(s)	28, 339, 387
Eco130I	CCWWGG	1 cut(s)	1061
Eco24I	GRGCYC	1 cut(s)	1227
Eco31I	GGTCTC	1 cut(s)	341
Eco57I	CTGAAG	3 cut(s)	387, 411, 435
Eco88I	CYCGRG	1 cut(s)	159
EcoT14I	CCWWGG	1 cut(s)	1061
EcoT38I	GRGCYC	1 cut(s)	1227
ErhI	CCWWGG	1 cut(s)	1061
FaeI	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
FalI	AAGNNNNNCTT	2 cut(s)	1104, 1136
FaqI	GGGAC	1 cut(s)	617
FatI	CATG	8 cut(s)	112, 120, 523, 580, 703, 708, 885, 963
Fnu4HI	GCNGC	3 cut(s)	380, 428, 945
FokI	GGATG	2 cut(s)	581, 844
FriOI	GRGCYC	1 cut(s)	1227
Fsp4HI	GCNGC	3 cut(s)	380, 428, 945
FspBI	CTAG	2 cut(s)	654, 1140
GluI	GCNGC	3 cut(s)	380, 428, 945
GsuI	CTGGAG	1 cut(s)	963
HaeIII	GGCC	2 cut(s)	111, 193
Hin1II	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
HincII	GTYRAC	2 cut(s)	955, 1054
HindII	GTYRAC	2 cut(s)	955, 1054
HindIII	AAGCTT	1 cut(s)	7
HinfI	GANTC	5 cut(s)	442, 463, 890, 976, 1234
HphI	GGTGA	2 cut(s)	638, 744
Hpy166II	GTNNAC	3 cut(s)	767, 955, 1054
Hpy188I	TCNGA	8 cut(s)	78, 88, 175, 304, 391, 439, 511, 1155
Hpy8I	GTNNAC	3 cut(s)	767, 955, 1054
HpyAV	CCTTC	8 cut(s)	100, 237, 280, 362, 410, 535, 709, 1237
HpyCH4III	ACNGT	2 cut(s)	52, 154
HpyCH4V	TGCA	8 cut(s)	479, 527, 602, 680, 767, 828, 947, 1046
HpyF10VI	GCNNNNNNNGC	1 cut(s)	905
HpyF3I	CTNAG	5 cut(s)	174, 438, 639, 1121, 1221
Hsp92II	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
Kzo9I	GATC	5 cut(s)	83, 514, 571, 674, 1150
LguI	GCTCTTC	1 cut(s)	28
LmnI	GCTCC	1 cut(s)	553
Lsp1109I	GCAGC	3 cut(s)	391, 439, 931
LweI	GCATC	2 cut(s)	488, 825
MaeI	CTAG	2 cut(s)	654, 1140
MaeIII	GTNAC	2 cut(s)	46, 656
MalI	GATC	5 cut(s)	85, 516, 573, 676, 1152
MboI	GATC	5 cut(s)	83, 514, 571, 674, 1150
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	674, 1150
MhlI	GDGCHC	2 cut(s)	769, 1227
MluCI	AATT	7 cut(s)	66, 400, 500, 592, 597, 779, 1170
MlyI	GAGTC	2 cut(s)	970, 1243
MroXI	GAANNNNTTC	1 cut(s)	699
MseI	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
MslI	CAYNNNNRTG	1 cut(s)	833
MunI	CAATTG	1 cut(s)	597
MwoI	GCNNNNNNNGC	1 cut(s)	905
NdeII	GATC	5 cut(s)	83, 514, 571, 674, 1150
NheI	GCTAGC	1 cut(s)	1139
NlaIII	CATG	8 cut(s)	116, 124, 527, 584, 707, 712, 889, 967
NlaIV	GGNNCC	4 cut(s)	373, 421, 969, 990
NmuCI	GTSAC	2 cut(s)	46, 656
NspI	RCATGY	2 cut(s)	527, 584
PaeI	GCATGC	1 cut(s)	527
PagI	TCATGA	1 cut(s)	703
PciSI	GCTCTTC	1 cut(s)	28
PdmI	GAANNNNTTC	1 cut(s)	699
PfeI	GAWTC	3 cut(s)	442, 463, 890
PkrI	GCNGC	3 cut(s)	381, 429, 946
PleI	GAGTC	2 cut(s)	970, 1242
PpsI	GAGTC	2 cut(s)	970, 1242
PspN4I	GGNNCC	4 cut(s)	373, 421, 969, 990
PspPI	GGNCC	2 cut(s)	109, 191
PsuI	RGATCY	2 cut(s)	674, 1150
RsaI	GTAC	2 cut(s)	877, 1087
RsaNI	GTAC	2 cut(s)	876, 1086
RseI	CAYNNNNRTG	1 cut(s)	833
SapI	GCTCTTC	1 cut(s)	28
SaqAI	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
SatI	GCNGC	3 cut(s)	380, 428, 945
Sau3AI	GATC	5 cut(s)	83, 514, 571, 674, 1150
Sau96I	GGNCC	2 cut(s)	109, 191
ScaI	AGTACT	1 cut(s)	1087
SchI	GAGTC	2 cut(s)	970, 1243
SduI	GDGCHC	2 cut(s)	769, 1227
SetI	ASST	9 cut(s)	11, 76, 337, 384, 432, 478, 757, 1044, 1127
SfaNI	GCATC	2 cut(s)	488, 825
SfcI	CTRYAG	2 cut(s)	135, 330
SmiMI	CAYNNNNRTG	1 cut(s)	833
SphI	GCATGC	1 cut(s)	527
Sse9I	AATT	7 cut(s)	66, 400, 500, 592, 597, 779, 1170
SsiI	CCGC	3 cut(s)	231, 1081, 1137
SspMI	CTAG	2 cut(s)	654, 1140
StyI	CCWWGG	1 cut(s)	1061
TaaI	ACNGT	2 cut(s)	52, 154
TaqI	TCGA	2 cut(s)	281, 1314
TasI	AATT	7 cut(s)	66, 400, 500, 592, 597, 779, 1170
TatI	WGTACW	2 cut(s)	875, 1085
TfiI	GAWTC	3 cut(s)	442, 463, 890
Tru1I	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
Tru9I	TTAA	8 cut(s)	69, 384, 432, 648, 788, 1130, 1163, 1278
TscAI	CASTG	2 cut(s)	769, 1272
TseFI	GTSAC	2 cut(s)	46, 656
TseI	GCWGC	3 cut(s)	379, 427, 944
Tsp45I	GTSAC	2 cut(s)	46, 656
TspDTI	ATGAA	8 cut(s)	87, 273, 299, 692, 756, 809, 846, 1304
TspRI	CASTG	2 cut(s)	769, 1272
VneI	GTGCAC	1 cut(s)	765
XceI	RCATGY	2 cut(s)	527, 584
XmnI	GAANNNNTTC	1 cut(s)	699
XspI	CTAG	2 cut(s)	654, 1140
ZrmI	AGTACT	1 cut(s)	1087

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.