Rmu_sc0005122.1_g000007
MYB Family

SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005122.1
OG0007632
Physical Location & Seq
Forward (+)
32624 .. 40098
7475 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1278 bp
atggtgcaagtcaaagaatgtgatcctaacatggaaaagggggttttgctttctttgagtcctccggtatcggatagcagtggagataacacagctctcaagccagcctctgctcaactgttcgagaatgacaggccctacgagatgatcagcaaagggaggctggacagaggaagagctgaatgtgttcgtggcagaacagatgttcagtgccttcatcgctggcagaaagtcctctcacctgatcttgaagatgatctaataattgagttggtcgcaaagcaggggaataagaaatggtctgaaatagcaaagtccttgccaggccgtataggcaagcaatgtcgagagaggtggcacaaccatttaaatccagatataaaaagaactgcatggacgaatgaagaagaaaagattctcattgagtcgcataaagcctacgggaacaaatgggctgaaatagcaaagcttctgcctggaagggagattcagataaaatctttggacaaaggaaatcgcggttggcttacaaaaggagttggtgcagataatatgatcaaatcaccacctagtaacctttattacgatagagctgcagctgcatgtggtctaaatattgaacaacgggaagaaatttatcataattatggcaggttgagagactcgcattatttatctgctaaacaatcaatcaaagcttgcagtactccttcctgtgatctttggggttttcccttttttcatggaaagaatcataaacccaatcaccctatgagtttgttgaataatggctcagattcttttgactacaatagaggagctggaaattttctcaagaaaccagatcgtcctattacagttgagagattacatgaatcttgtacagtgtcacaagacttgggtcacctgacctctagatctggtccggcccatcaccttcaccaccagggtgtgcttcacagtcgattccatgctcagatttgggagctcgagacgagggtctggaggaggaggcggccgcttggcttggaggagagtttgagattgtggagattcccaacatcacagatcatcgtcacgtattctcttgatcaggatgggatattgaatgttaatgttaccgctgagggaacatctgagcactctgatatcaaacacatgctactcgtcaagagtagcaagagaggattggacagcaatgtagttagtatgatggccgacaagttagcaagggaggagctcgtaaagcttgctgatggaagcaatgttgaagtttaa

Protein Analysis

425

Amino Acids

48.21

Weight (kDa)

8.86

Isoelectric Point (pI)

54.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Myb_DNA-binding PF00249 84 - 123 4.2e-14 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 84 - 137 9.5e-17 Myb-like DNA-binding domain
Myb_DNA-binding PF00249 129 - 162 6.9e-10 Myb-like DNA-binding domain
Myb_DNA-bind_6 PF13921 132 - 161 2.1e-06 Myb-like DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 642
AccII CGCG 1 cut(s) 519
AciI CCGC 4 cut(s) 519, 1015, 1019, 1122
AclWI GGATC 1 cut(s) 17
AcoI YGGCCR 2 cut(s) 1016, 1215
AcsI RAATTY 2 cut(s) 633, 826
AfaI GTAC 2 cut(s) 706, 883
AgsI TTSAA 5 cut(s) 251, 620, 784, 1108, 1271
AjnI CCWGG 3 cut(s) 322, 475, 945
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AleI CACNNNNGTG 1 cut(s) 948
Alw21I GWGCWC 3 cut(s) 990, 1143, 1242
Alw26I GTCTC 2 cut(s) 654, 986
AlwI GGATC 1 cut(s) 17
AlwNI CAGNNNCTG 1 cut(s) 110
Ama87I CYCGRG 1 cut(s) 989
AoxI GGCC 5 cut(s) 134, 325, 927, 1016, 1215
ApeKI GCWGC 3 cut(s) 593, 596, 599
ApoI RAATTY 2 cut(s) 633, 826
Asp700I GAANNNNTTC 2 cut(s) 186, 414
AspS9I GGNCC 3 cut(s) 135, 923, 928
AsuHPI GGTGA 6 cut(s) 231, 555, 758, 896, 926, 932
AvaI CYCGRG 1 cut(s) 989
AvaII GGWCC 1 cut(s) 923
BanII GRGCYC 2 cut(s) 990, 1242
Bbv12I GWGCWC 3 cut(s) 990, 1143, 1242
BbvCI CCTCAGC 1 cut(s) 1125
BbvI GCAGC 3 cut(s) 580, 586, 608
BccI CCATC 4 cut(s) 939, 1091, 1207, 1250
BceAI ACGGC 1 cut(s) 312
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 3 cut(s) 324, 477, 947
BclI TGATCA 3 cut(s) 147, 555, 1090
BcoDI GTCTC 2 cut(s) 654, 986
BfaI CTAG 2 cut(s) 570, 915
BfmI CTRYAG 1 cut(s) 594
BfuAI ACCTGC 1 cut(s) 642
BglI GCCNNNNNGGC 1 cut(s) 333
BglII AGATCT 1 cut(s) 917
BisI GCNGC 5 cut(s) 594, 597, 600, 1016, 1019
BlsI GCNGC 5 cut(s) 595, 598, 601, 1017, 1020
BmcAI AGTACT 1 cut(s) 706
Bme1390I CCNGG 3 cut(s) 324, 477, 947
Bme18I GGWCC 1 cut(s) 923
BmeT110I CYCGRG 1 cut(s) 989
BmgT120I GGNCC 3 cut(s) 135, 923, 928
BmrFI CCNGG 3 cut(s) 324, 477, 947
BoxI GACNNNNGTC 2 cut(s) 900, 998
BpmI CTGGAG 1 cut(s) 1024
Bpu10I CCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 2 cut(s) 83, 818
BsaAI YACGTR 1 cut(s) 1080
BsaJI CCNNGG 1 cut(s) 946
BsaWI WCCGGW 1 cut(s) 64
Bse3DI GCAATG 3 cut(s) 347, 1204, 1270
BseBI CCWGG 3 cut(s) 324, 477, 947
BseDI CCNNGG 1 cut(s) 946
BseGI GGATG 1 cut(s) 1102
BseMI GCAATG 3 cut(s) 347, 1204, 1270
BseMII CTCAG 4 cut(s) 807, 989, 1116, 1128
BseRI GAGGAG 5 cut(s) 831, 1021, 1024, 1046, 1250
BseX3I CGGCCG 1 cut(s) 1016
BseXI GCAGC 3 cut(s) 580, 586, 608
BsgI GTGCAG 1 cut(s) 564
Bsh1236I CGCG 1 cut(s) 519
Bsh1285I CGRYCG 1 cut(s) 1019
BshFI GGCC 5 cut(s) 136, 327, 929, 1018, 1217
BsiEI CGRYCG 1 cut(s) 1019
BsiHKAI GWGCWC 3 cut(s) 990, 1143, 1242
BsiHKCI CYCGRG 1 cut(s) 989
BsiSI CCGG 2 cut(s) 65, 926
BsmAI GTCTC 2 cut(s) 654, 986
BsmBI CGTCTC 1 cut(s) 986
BsnI GGCC 5 cut(s) 136, 327, 929, 1018, 1217
BsoBI CYCGRG 1 cut(s) 989
Bsp1286I GDGCHC 3 cut(s) 990, 1143, 1242
Bsp1407I TGTACA 1 cut(s) 881
BspACI CCGC 4 cut(s) 519, 1015, 1019, 1122
BspANI GGCC 5 cut(s) 136, 327, 929, 1018, 1217
BspCNI CTCAG 4 cut(s) 806, 988, 1117, 1129
BspFNI CGCG 1 cut(s) 519
BspMAI CTGCAG 1 cut(s) 598
BspMI ACCTGC 1 cut(s) 642
BspPI GGATC 1 cut(s) 17
BspQI GCTCTTC 1 cut(s) 169
BsrDI GCAATG 3 cut(s) 347, 1204, 1270
BsrGI TGTACA 1 cut(s) 881
BssECI CCNNGG 1 cut(s) 946
Bst2UI CCWGG 3 cut(s) 324, 477, 947
Bst4CI ACNGT 4 cut(s) 120, 859, 886, 962
Bst6I CTCTTC 1 cut(s) 169
BstAUI TGTACA 1 cut(s) 881
BstBAI YACGTR 1 cut(s) 1080
BstC8I GCNNGC 5 cut(s) 105, 224, 338, 700, 1251
BstDEI CTNAG 4 cut(s) 793, 975, 1125, 1137
BstEII GGTNACC 1 cut(s) 902
BstF5I GGATG 1 cut(s) 1102
BstFNI CGCG 1 cut(s) 519
BstMAI GTCTC 2 cut(s) 654, 986
BstMCI CGRYCG 1 cut(s) 1019
BstMWI GCNNNNNNNGC 5 cut(s) 219, 333, 461, 599, 1246
BstNI CCWGG 3 cut(s) 324, 477, 947
BstNSI RCATGY 2 cut(s) 606, 1162
BstPAI GACNNNNGTC 2 cut(s) 900, 998
BstPI GGTNACC 1 cut(s) 902
BstSCI CCNGG 3 cut(s) 322, 475, 945
BstSFI CTRYAG 1 cut(s) 594
BstUI CGCG 1 cut(s) 519
BstV1I GCAGC 3 cut(s) 580, 586, 608
BstX2I RGATCY 1 cut(s) 917
BstYI RGATCY 1 cut(s) 917
BstZI CGGCCG 1 cut(s) 1016
BsuRI GGCC 5 cut(s) 136, 327, 929, 1018, 1217
BtgZI GCGATG 1 cut(s) 203
BtsCI GGATG 1 cut(s) 1102
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 3 cut(s) 85, 215, 891
BveI ACCTGC 1 cut(s) 642
Cac8I GCNNGC 5 cut(s) 105, 224, 338, 700, 1251
CaiI CAGNNNCTG 1 cut(s) 110
CciNI GCGGCCGC 1 cut(s) 1016
Cfr13I GGNCC 3 cut(s) 135, 923, 928
Csp6I GTAC 2 cut(s) 705, 882
CviAII CATG 7 cut(s) 31, 393, 603, 743, 872, 971, 1159
CviQI GTAC 2 cut(s) 705, 882
DdeI CTNAG 4 cut(s) 793, 975, 1125, 1137
DraI TTTAAA 1 cut(s) 369
EaeI YGGCCR 2 cut(s) 1016, 1215
EagI CGGCCG 1 cut(s) 1016
Eam1104I CTCTTC 1 cut(s) 169
EarI CTCTTC 1 cut(s) 169
Ecl136II GAGCTC 2 cut(s) 988, 1240
EclXI CGGCCG 1 cut(s) 1016
Eco24I GRGCYC 2 cut(s) 990, 1242
Eco32I GATATC 1 cut(s) 1150
Eco47I GGWCC 1 cut(s) 923
Eco52I CGGCCG 1 cut(s) 1016
Eco53kI GAGCTC 2 cut(s) 988, 1240
Eco88I CYCGRG 1 cut(s) 989
Eco91I GGTNACC 1 cut(s) 902
EcoICRI GAGCTC 2 cut(s) 988, 1240
EcoO109I RGGNCCY 1 cut(s) 135
EcoO65I GGTNACC 1 cut(s) 902
EcoRII CCWGG 3 cut(s) 322, 475, 945
EcoRV GATATC 1 cut(s) 1150
EcoT38I GRGCYC 2 cut(s) 990, 1242
Esp3I CGTCTC 1 cut(s) 986
FaeI CATG 7 cut(s) 34, 396, 606, 746, 875, 974, 1162
FatI CATG 7 cut(s) 30, 392, 602, 742, 871, 970, 1158
FbaI TGATCA 3 cut(s) 147, 555, 1090
Fnu4HI GCNGC 5 cut(s) 594, 597, 600, 1016, 1019
FokI GGATG 1 cut(s) 1109
FriOI GRGCYC 2 cut(s) 990, 1242
Fsp4HI GCNGC 5 cut(s) 594, 597, 600, 1016, 1019
FspBI CTAG 2 cut(s) 570, 915
GluI GCNGC 5 cut(s) 594, 597, 600, 1016, 1019
GsuI CTGGAG 1 cut(s) 1024
HaeIII GGCC 5 cut(s) 136, 327, 929, 1018, 1217
HapII CCGG 2 cut(s) 65, 926
Hin1II CATG 7 cut(s) 34, 396, 606, 746, 875, 974, 1162
HindIII AAGCTT 3 cut(s) 467, 696, 1247
HpaII CCGG 2 cut(s) 65, 926
HphI GGTGA 6 cut(s) 231, 555, 758, 896, 926, 932
Hpy188I TCNGA 7 cut(s) 73, 304, 492, 796, 978, 1138, 1147
HpyAV CCTTC 4 cut(s) 224, 474, 720, 947
HpyCH4III ACNGT 4 cut(s) 120, 859, 886, 962
HpyCH4IV ACGT 1 cut(s) 1079
HpyCH4V TGCA 6 cut(s) 7, 392, 545, 596, 602, 702
HpyF10VI GCNNNNNNNGC 5 cut(s) 219, 333, 461, 599, 1246
HpyF3I CTNAG 4 cut(s) 793, 975, 1125, 1137
HpySE526I ACGT 1 cut(s) 1079
Hsp92II CATG 7 cut(s) 34, 396, 606, 746, 875, 974, 1162
Ksp22I TGATCA 3 cut(s) 147, 555, 1090
LguI GCTCTTC 1 cut(s) 169
LmnI GCTCC 3 cut(s) 818, 985, 1237
Lsp1109I GCAGC 3 cut(s) 580, 586, 608
MaeI CTAG 2 cut(s) 570, 915
MaeII ACGT 1 cut(s) 1079
MaeIII GTNAC 5 cut(s) 572, 888, 902, 1075, 1117
MboII GAAGA 5 cut(s) 186, 263, 416, 419, 641
MflI RGATCY 1 cut(s) 917
MhlI GDGCHC 3 cut(s) 990, 1143, 1242
MluCI AATT 4 cut(s) 264, 633, 643, 826
MlyI GAGTC 3 cut(s) 67, 434, 656
MroXI GAANNNNTTC 2 cut(s) 186, 414
MseI TTAA 3 cut(s) 368, 1113, 1276
MslI CAYNNNNRTG 2 cut(s) 645, 948
MspA1I CMGCKG 2 cut(s) 599, 1124
MspI CCGG 2 cut(s) 65, 926
MspR9I CCNGG 3 cut(s) 324, 477, 947
MvaI CCWGG 3 cut(s) 324, 477, 947
MvnI CGCG 1 cut(s) 519
MwoI GCNNNNNNNGC 5 cut(s) 219, 333, 461, 599, 1246
NlaIII CATG 7 cut(s) 34, 396, 606, 746, 875, 974, 1162
NmuCI GTSAC 3 cut(s) 888, 902, 1075
NotI GCGGCCGC 1 cut(s) 1016
NspI RCATGY 2 cut(s) 606, 1162
OliI CACNNNNGTG 1 cut(s) 948
PaeR7I CTCGAG 1 cut(s) 989
PciSI GCTCTTC 1 cut(s) 169
PdmI GAANNNNTTC 2 cut(s) 186, 414
PfeI GAWTC 7 cut(s) 415, 487, 751, 797, 875, 966, 1053
PkrI GCNGC 5 cut(s) 595, 598, 601, 1017, 1020
PleI GAGTC 3 cut(s) 66, 433, 656
PpsI GAGTC 3 cut(s) 66, 433, 656
Ppu21I YACGTR 1 cut(s) 1080
PshAI GACNNNNGTC 2 cut(s) 900, 998
Psp124BI GAGCTC 2 cut(s) 990, 1242
Psp6I CCWGG 3 cut(s) 322, 475, 945
PspEI GGTNACC 1 cut(s) 902
PspGI CCWGG 3 cut(s) 322, 475, 945
PspPI GGNCC 3 cut(s) 135, 923, 928
PstI CTGCAG 1 cut(s) 598
PstNI CAGNNNCTG 1 cut(s) 110
PsuI RGATCY 1 cut(s) 917
PvuII CAGCTG 1 cut(s) 599
RsaI GTAC 2 cut(s) 706, 883
RsaNI GTAC 2 cut(s) 705, 882
RseI CAYNNNNRTG 2 cut(s) 645, 948
SacI GAGCTC 2 cut(s) 990, 1242
SapI GCTCTTC 1 cut(s) 169
SaqAI TTAA 3 cut(s) 368, 1113, 1276
SatI GCNGC 5 cut(s) 594, 597, 600, 1016, 1019
Sau96I GGNCC 3 cut(s) 135, 923, 928
ScaI AGTACT 1 cut(s) 706
SchI GAGTC 3 cut(s) 67, 434, 656
ScrFI CCNGG 3 cut(s) 324, 477, 947
SduI GDGCHC 3 cut(s) 990, 1143, 1242
SfcI CTRYAG 1 cut(s) 594
Sfr274I CTCGAG 1 cut(s) 989
SinI GGWCC 1 cut(s) 923
SlaI CTCGAG 1 cut(s) 989
SmiI ATTTAAAT 1 cut(s) 369
SmiMI CAYNNNNRTG 2 cut(s) 645, 948
SmlI CTYRAG 3 cut(s) 98, 833, 989
SmoI CTYRAG 3 cut(s) 98, 833, 989
Sse9I AATT 4 cut(s) 264, 633, 643, 826
SsiI CCGC 4 cut(s) 519, 1015, 1019, 1122
SspI AATATT 1 cut(s) 616
SspMI CTAG 2 cut(s) 570, 915
SstI GAGCTC 2 cut(s) 990, 1242
StyD4I CCNGG 3 cut(s) 322, 475, 945
SwaI ATTTAAAT 1 cut(s) 369
TaaI ACNGT 4 cut(s) 120, 859, 886, 962
TaiI ACGT 1 cut(s) 1082
TaqI TCGA 4 cut(s) 123, 346, 964, 990
TasI AATT 4 cut(s) 264, 633, 643, 826
TatI WGTACW 2 cut(s) 704, 881
TauI GCSGC 2 cut(s) 1018, 1021
TfiI GAWTC 7 cut(s) 415, 487, 751, 797, 875, 966, 1053
Tru1I TTAA 3 cut(s) 368, 1113, 1276
Tru9I TTAA 3 cut(s) 368, 1113, 1276
TscAI CASTG 3 cut(s) 85, 215, 891
TseFI GTSAC 3 cut(s) 888, 902, 1075
TseI GCWGC 3 cut(s) 593, 596, 599
Tsp45I GTSAC 3 cut(s) 888, 902, 1075
TspDTI ATGAA 4 cut(s) 206, 417, 731, 888
TspRI CASTG 3 cut(s) 85, 215, 891
VpaK11BI GGWCC 1 cut(s) 923
XapI RAATTY 2 cut(s) 633, 826
XbaI TCTAGA 1 cut(s) 914
XceI RCATGY 2 cut(s) 606, 1162
XhoI CTCGAG 1 cut(s) 989
XmnI GAANNNNTTC 2 cut(s) 186, 414
XspI CTAG 2 cut(s) 570, 915
ZrmI AGTACT 1 cut(s) 706
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.