Rmu_sc0005275.1_g000002

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005275.1
OG0009153
Physical Location & Seq
Forward (+)
1977 .. 5892
3916 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 720 bp
atgagaacggctctcctaaactcaaaactgaactactcgatttatgtgaggagtgccctgtttcattcaacccccgtgttggatcgtaaaagacgcaacaacaactgggaatcatttagaaaccacaactattcaaaaaggtccagaaggatacatgcaaaacaaacattattgcgcaatgtcaatgattatgcagacttcctatttcagaaatggcaggatccgtatgatttgaacgaaccatcttcaaatagaggcacttcatggtttaaaaagcaatactcagcgaagggctccaaaaagaaatggggaagcaatcaaggagcctccagccggggcagaagaggtttcgagttttatgaagaatatgtagatgtacggaccattttttactggtcatttgtcaatgaagatgattcacagtggagaagctcttcaaattactctaatcactctgggagatcatggagttggagacatcgtaatgaggaacaatatgaatctgagtctgacgattcggagtcagatgagaggttggcccttggattgagtgctgcaggccctctgaaacttgaagatgtcaaaaatgcatatcgaacctgtgcactgaaatggcatccagatcgtcaccagggctcttccaaggctgctgcagaggaaaagttcaagcattgcagcgcagcttatcaatctttatgtgataaattggctgtgaattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ

Protein Analysis

239

Amino Acids

28.12

Weight (kDa)

9.51

Isoelectric Point (pI)

54.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 190 - 235 2.5e-11 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 176
AclWI GGATC 3 cut(s) 90, 215, 228
AfaI GTAC 1 cut(s) 378
AfiI CCNNNNNNNGG 2 cut(s) 79, 333
AgsI TTSAA 7 cut(s) 69, 135, 235, 249, 438, 575, 667
AjnI CCWGG 1 cut(s) 630
AluBI AGCT 2 cut(s) 432, 683
AluI AGCT 2 cut(s) 432, 683
Alw21I GWGCWC 1 cut(s) 607
Alw26I GTCTC 1 cut(s) 469
Alw44I GTGCAC 1 cut(s) 603
AlwI GGATC 3 cut(s) 90, 215, 228
AoxI GGCC 2 cut(s) 537, 559
ApaLI GTGCAC 1 cut(s) 603
ApeKI GCWGC 5 cut(s) 554, 647, 650, 675, 680
Asp700I GAANNNNTTC 1 cut(s) 433
AspLEI GCGC 2 cut(s) 177, 680
AspS9I GGNCC 4 cut(s) 141, 381, 538, 560
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 620
AvaII GGWCC 2 cut(s) 141, 381
BaeGI GKGCMC 2 cut(s) 58, 607
BamHI GGATCC 1 cut(s) 220
BanII GRGCYC 2 cut(s) 296, 638
Bbv12I GWGCWC 1 cut(s) 607
BbvI GCAGC 5 cut(s) 541, 634, 637, 687, 692
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 24
BcgI CGANNNNNNTGC 2 cut(s) 605, 639
BciT130I CCWGG 1 cut(s) 632
BciVI GTATCC 1 cut(s) 144
BcnI CCSGG 1 cut(s) 335
BcoDI GTCTC 1 cut(s) 469
BfmI CTRYAG 2 cut(s) 555, 651
BfuI GTATCC 1 cut(s) 144
BisI GCNGC 5 cut(s) 555, 648, 651, 676, 681
BlsI GCNGC 5 cut(s) 556, 649, 652, 677, 682
Bme1390I CCNGG 2 cut(s) 335, 632
Bme18I GGWCC 2 cut(s) 141, 381
BmgT120I GGNCC 4 cut(s) 141, 381, 538, 560
BmiI GGNNCC 3 cut(s) 222, 295, 325
BmrFI CCNGG 2 cut(s) 335, 632
BmrI ACTGGG 1 cut(s) 115
BmsI GCATC 1 cut(s) 625
BmuI ACTGGG 1 cut(s) 115
BplI GAGNNNNNCTC 1 cut(s) 27
BpmI CTGGAG 1 cut(s) 313
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 4 cut(s) 334, 541, 631, 642
BsaXI ACNNNNNCTCC 2 cut(s) 466, 496
Bsc4I CCNNNNNNNGG 2 cut(s) 79, 333
Bse1I ACTGG 2 cut(s) 110, 398
Bse3DI GCAATG 2 cut(s) 184, 670
BseBI CCWGG 1 cut(s) 632
BseDI CCNNGG 4 cut(s) 334, 541, 631, 642
BseGI GGATG 1 cut(s) 616
BseLI CCNNNNNNNGG 2 cut(s) 79, 333
BseMI GCAATG 2 cut(s) 184, 670
BseMII CTCAG 2 cut(s) 297, 495
BseNI ACTGG 2 cut(s) 110, 398
BseRI GAGGAG 1 cut(s) 64
BseSI GKGCMC 2 cut(s) 58, 607
BseXI GCAGC 5 cut(s) 541, 634, 637, 687, 692
BshFI GGCC 2 cut(s) 539, 561
BsiHKAI GWGCWC 1 cut(s) 607
BsiSI CCGG 1 cut(s) 334
BslI CCNNNNNNNGG 2 cut(s) 79, 333
BsmAI GTCTC 1 cut(s) 469
BsnI GGCC 2 cut(s) 539, 561
Bsp1286I GDGCHC 4 cut(s) 58, 296, 607, 638
Bsp143I GATC 4 cut(s) 82, 220, 461, 622
BspANI GGCC 2 cut(s) 539, 561
BspCNI CTCAG 2 cut(s) 296, 496
BspLI GGNNCC 3 cut(s) 222, 295, 325
BspMAI CTGCAG 2 cut(s) 559, 655
BspPI GGATC 3 cut(s) 90, 215, 228
BspQI GCTCTTC 2 cut(s) 439, 643
BsrDI GCAATG 2 cut(s) 184, 670
BsrI ACTGG 2 cut(s) 110, 398
BssECI CCNNGG 4 cut(s) 334, 541, 631, 642
BssMI GATC 4 cut(s) 82, 220, 461, 622
BssT1I CCWWGG 2 cut(s) 541, 642
Bst2UI CCWGG 1 cut(s) 632
Bst4CI ACNGT 1 cut(s) 423
Bst6I CTCTTC 3 cut(s) 337, 439, 643
BstC8I GCNNGC 1 cut(s) 559
BstDEI CTNAG 2 cut(s) 283, 504
BstF5I GGATG 1 cut(s) 616
BstHHI GCGC 2 cut(s) 177, 680
BstKTI GATC 4 cut(s) 85, 223, 464, 625
BstMAI GTCTC 1 cut(s) 469
BstMBI GATC 4 cut(s) 82, 220, 461, 622
BstNI CCWGG 1 cut(s) 632
BstNSI RCATGY 1 cut(s) 158
BstSCI CCNGG 2 cut(s) 333, 630
BstSFI CTRYAG 2 cut(s) 555, 651
BstSLI GKGCMC 2 cut(s) 58, 607
BstV1I GCAGC 5 cut(s) 541, 634, 637, 687, 692
BstX2I RGATCY 1 cut(s) 220
BstYI RGATCY 1 cut(s) 220
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 2 cut(s) 539, 561
BtsCI GGATG 1 cut(s) 616
BtsIMutI CAGTG 2 cut(s) 428, 605
Cac8I GCNNGC 1 cut(s) 559
CfoI GCGC 2 cut(s) 177, 680
Cfr13I GGNCC 4 cut(s) 141, 381, 538, 560
CseI GACGC 1 cut(s) 102
Csp6I GTAC 1 cut(s) 377
CviAII CATG 3 cut(s) 155, 264, 465
CviQI GTAC 1 cut(s) 377
DdeI CTNAG 2 cut(s) 283, 504
DpnI GATC 4 cut(s) 84, 222, 463, 624
DpnII GATC 4 cut(s) 82, 220, 461, 622
DraI TTTAAA 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 337, 439, 643
EarI CTCTTC 3 cut(s) 337, 439, 643
Eco130I CCWWGG 2 cut(s) 541, 642
Eco24I GRGCYC 2 cut(s) 296, 638
Eco47I GGWCC 2 cut(s) 141, 381
EcoO109I RGGNCCY 1 cut(s) 560
EcoRII CCWGG 1 cut(s) 630
EcoT14I CCWWGG 2 cut(s) 541, 642
EcoT22I ATGCAT 1 cut(s) 592
EcoT38I GRGCYC 2 cut(s) 296, 638
ErhI CCWWGG 2 cut(s) 541, 642
FaeI CATG 3 cut(s) 158, 267, 468
FatI CATG 3 cut(s) 154, 263, 464
Fnu4HI GCNGC 5 cut(s) 555, 648, 651, 676, 681
FokI GGATG 1 cut(s) 603
FriOI GRGCYC 2 cut(s) 296, 638
Fsp4HI GCNGC 5 cut(s) 555, 648, 651, 676, 681
FspI TGCGCA 1 cut(s) 176
GlaI GCGC 2 cut(s) 176, 679
GluI GCNGC 5 cut(s) 555, 648, 651, 676, 681
GsuI CTGGAG 1 cut(s) 313
HaeIII GGCC 2 cut(s) 539, 561
HapII CCGG 1 cut(s) 334
HgaI GACGC 1 cut(s) 102
HhaI GCGC 2 cut(s) 177, 680
Hin1II CATG 3 cut(s) 158, 267, 468
Hin6I GCGC 2 cut(s) 175, 678
HinP1I GCGC 2 cut(s) 175, 678
HinfI GANTC 6 cut(s) 110, 416, 500, 506, 515, 521
HpaII CCGG 1 cut(s) 334
HphI GGTGA 1 cut(s) 620
Hpy166II GTNNAC 1 cut(s) 605
Hpy188I TCNGA 6 cut(s) 210, 505, 511, 520, 526, 567
Hpy188III TCNNGA 2 cut(s) 144, 620
Hpy8I GTNNAC 1 cut(s) 605
HpyAV CCTTC 2 cut(s) 141, 283
HpyCH4III ACNGT 1 cut(s) 423
HpyCH4V TGCA 7 cut(s) 158, 194, 557, 590, 605, 653, 675
HpyF3I CTNAG 2 cut(s) 283, 504
Hsp92II CATG 3 cut(s) 158, 267, 468
HspAI GCGC 2 cut(s) 175, 678
Kzo9I GATC 4 cut(s) 82, 220, 461, 622
LguI GCTCTTC 2 cut(s) 439, 643
LmnI GCTCC 2 cut(s) 299, 323
Lsp1109I GCAGC 5 cut(s) 541, 634, 637, 687, 692
LweI GCATC 1 cut(s) 625
MaeIII GTNAC 1 cut(s) 626
MalI GATC 4 cut(s) 84, 222, 463, 624
MboI GATC 4 cut(s) 82, 220, 461, 622
MboII GAAGA 7 cut(s) 237, 354, 374, 422, 426, 587, 630
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 4 cut(s) 58, 296, 607, 638
MluCI AATT 3 cut(s) 439, 704, 715
MlyI GAGTC 2 cut(s) 515, 530
MmeI TCCRAC 2 cut(s) 60, 452
MnlI CCTC 8 cut(s) 42, 248, 337, 338, 481, 525, 573, 649
Mph1103I ATGCAT 1 cut(s) 592
MroXI GAANNNNTTC 1 cut(s) 433
MseI TTAA 1 cut(s) 270
MslI CAYNNNNRTG 2 cut(s) 483, 610
MspI CCGG 1 cut(s) 334
MspR9I CCNGG 2 cut(s) 335, 632
MvaI CCWGG 1 cut(s) 632
NciI CCSGG 1 cut(s) 335
NdeII GATC 4 cut(s) 82, 220, 461, 622
NlaIII CATG 3 cut(s) 158, 267, 468
NlaIV GGNNCC 3 cut(s) 222, 295, 325
NmuCI GTSAC 1 cut(s) 626
NsbI TGCGCA 1 cut(s) 176
NsiI ATGCAT 1 cut(s) 592
NspI RCATGY 1 cut(s) 158
PciSI GCTCTTC 2 cut(s) 439, 643
PdmI GAANNNNTTC 1 cut(s) 433
PfeI GAWTC 4 cut(s) 110, 416, 500, 515
PkrI GCNGC 5 cut(s) 556, 649, 652, 677, 682
PleI GAGTC 2 cut(s) 514, 529
PpsI GAGTC 2 cut(s) 514, 529
Psp6I CCWGG 1 cut(s) 630
PspGI CCWGG 1 cut(s) 630
PspN4I GGNNCC 3 cut(s) 222, 295, 325
PspPI GGNCC 4 cut(s) 141, 381, 538, 560
PstI CTGCAG 2 cut(s) 559, 655
PsuI RGATCY 1 cut(s) 220
RsaI GTAC 1 cut(s) 378
RsaNI GTAC 1 cut(s) 377
RseI CAYNNNNRTG 2 cut(s) 483, 610
SapI GCTCTTC 2 cut(s) 439, 643
SaqAI TTAA 1 cut(s) 270
SatI GCNGC 5 cut(s) 555, 648, 651, 676, 681
Sau3AI GATC 4 cut(s) 82, 220, 461, 622
Sau96I GGNCC 4 cut(s) 141, 381, 538, 560
SchI GAGTC 2 cut(s) 515, 530
ScrFI CCNGG 2 cut(s) 335, 632
SduI GDGCHC 4 cut(s) 58, 296, 607, 638
SetI ASST 6 cut(s) 143, 349, 434, 536, 602, 685
SfaNI GCATC 1 cut(s) 625
SfcI CTRYAG 2 cut(s) 555, 651
SinI GGWCC 2 cut(s) 141, 381
SmiMI CAYNNNNRTG 2 cut(s) 483, 610
Sse9I AATT 3 cut(s) 439, 704, 715
StyD4I CCNGG 2 cut(s) 333, 630
StyI CCWWGG 2 cut(s) 541, 642
TaaI ACNGT 1 cut(s) 423
TaqI TCGA 3 cut(s) 38, 351, 595
TasI AATT 3 cut(s) 439, 704, 715
TfiI GAWTC 4 cut(s) 110, 416, 500, 515
Tru1I TTAA 1 cut(s) 270
Tru9I TTAA 1 cut(s) 270
TscAI CASTG 2 cut(s) 428, 612
TseFI GTSAC 1 cut(s) 626
TseI GCWGC 5 cut(s) 554, 647, 650, 675, 680
Tsp45I GTSAC 1 cut(s) 626
TspDTI ATGAA 5 cut(s) 53, 252, 375, 423, 513
TspGWI ACGGA 2 cut(s) 213, 394
TspRI CASTG 2 cut(s) 428, 612
VneI GTGCAC 1 cut(s) 603
VpaK11BI GGWCC 2 cut(s) 141, 381
XceI RCATGY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 433
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.