Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005641.1

Orthogroup ID

OG0009953

Physical Location & Seq

Genomic Coordinates Forward (+)

30115 .. 33421

Gene Structure 3307 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1287 bp

atggaagccatggacttggatatggaatcgaaacctcaaccgcaggactcatccaagcgtttcggcctcaaaacctctatcccaaccaactttggagacgattacgttttccaaattgtgcccaaggatgattggactgcaatggcggtgtcactgtcaaccaacgctgtgaagctctactcaccggtgactggtcagtactatggagagtgcaaaggccactctgcaactatcaatcaaatttcatttgcagacccatcatccccacatgttttgcactcctgctcttccgatggaaccattagactttgggactcccgcacgtttcaacaggtgtcatcttttcattccggttcgagtgaggagattttcagcttttcgtttggtggatcatctaataatcttctggccgcaggatgtaattctcagatactaatgtgggattggaggaacgacaaacaagtagcatgcttagaggactctcatgtggaagatgttactatactttggtattttgtgttcttcaccaaattgggcatggatactttgcccttgtggatttcttgctactgtgttgtgatcggtgctttaatttgttgcagtcgtcttcctgaggtgaagtgggcccagagggaggacaaggttttccttaccgtgcttctgcccgatgccaaggacgctaaggttaagcttgagcctgaaggcgttttcatcttctctgctagtgccggtgcagagaatcaccaatatgagctcaaactcgaccttttcgacaaggttaatgtagaggaaagcaaaataagtattggagtgaggagtattgtctgtattgtggagaaggcggagaaagtttggtggagtaagctactgaaaggaagtgggaagacaccgcattatgtcaaagtagattgggacaaatgggtggacgaagacgaggatcctccagcagcaggtgctgatgacatgggtatgggaggcatggatttctcgaaatttggtggcatgggaggtgatgatgcaatgggagggatgggtggactgggtggtatgggcggaatgggtggtatgggcgggatggatttctcgaaacttgctggcatgggaggtgaaggtggaatgggtgggatggatttctcgaaatttgctggcatgggaggtgatggtgcaatgggcgactttgatgatagtgatgatgaccaagaagtgtccaagccaggagattcggatgctggcaagagtgaagctgattcctcaggagagaaaaaggaagctacaccaagcacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009888 GO:0009893 GO:0009966 GO:0009968 GO:0010449 GO:0010468 GO:0010604 GO:0010628 GO:0010646 GO:0010648 GO:0010817 GO:0016020 GO:0019222 GO:0022622 GO:0023051 GO:0023057 GO:0030054 GO:0032501 GO:0032502 GO:0032879 GO:0035266 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048364 GO:0048507 GO:0048518 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048589 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0051049 GO:0055044 GO:0060255 GO:0065007 GO:0065008 GO:0071944 GO:0080036 GO:0080037 GO:0099402 GO:2000012

KEGG Pathways

Metabolic & Signaling

ko00590 ko01100 map00590 map01100

Pfam Domains

Protein Families

Protein Analysis

428

Amino Acids

46.2

Weight (kDa)

4.51

Isoelectric Point (pI)

35.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_CDC20-Fz	PF24807	33 - 159	2.9e-09	CDC20/Fizzy WD40 domain
Beta-prop_WDR3_1st	PF25173	36 - 161	1.5e-10	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	46 - 168	1.1e-15	WDR5 beta-propeller domain
Beta-prop_WDR75_1st	PF23869	51 - 106	7.6e-06	WD repeat-containing protein 75 first beta-propeller
Beta-prop_THOC3	PF25174	55 - 156	6.7e-12	THOC3 beta-propeller domain
Beta-prop_WDR3_2nd	PF25172	55 - 149	9e-08	WDR3 second beta-propeller domain
WD40_Prp19	PF24814	56 - 162	4e-09	Prp19 WD40 domain
WD40	PF00400	68 - 105	4.6e-06	WD domain, G-beta repeat
CS	PF04969	204 - 280	2.5e-12	CS domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009953)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G47790
fragaria_vesca	FvH4_2g25530 FvH4_2g25530
malus_domestica	MD03G1286100.v1.1 MD11G1306000.v1.1
prunus_persica	Prupe.8G259400_v2.0.a1 Prupe.8G259600_v2.0.a1
pyrus_communis	pycom11g26780
rosa_chinensis	RchiOBHm_Chr6g0293741 RchiOBHm_Chr6g0293751
rosa_laevigata	RLG00000011927
rosa_multiflora	Rmu_co8509229.1_g000002 Rmu_sc0005641.1_g000008 Rmu_sc0040923.1_g000001
rosa_roxburghii	Rroxscaffold_7G00173930
rosa_rugosa	Rorug06G0237800
rosa_samantha	Rh6AG350600 Rh6BG358000 Rh6CG364900 Rh6DG351800
rosa_wichuraiana	Rw6G030530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	941
Acc36I	ACCTGC	1 cut(s)	941
AciI	CCGC	8 cut(s)	41, 146, 319, 411, 842, 890, 1053, 1071
AclWI	GGATC	3 cut(s)	397, 932, 945
AcoI	YGGCCR	1 cut(s)	408
AcsI	RAATTY	3 cut(s)	240, 992, 1139
AcuI	CTGAAG	1 cut(s)	720
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	3 cut(s)	191, 634, 950
AflIII	ACRYGT	1 cut(s)	268
AgeI	ACCGGT	1 cut(s)	184
AgsI	TTSAA	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	1213
AluBI	AGCT	7 cut(s)	175, 375, 691, 754, 865, 1244, 1271
AluI	AGCT	7 cut(s)	175, 375, 691, 754, 865, 1244, 1271
Alw21I	GWGCWC	1 cut(s)	756
Alw26I	GTCTC	1 cut(s)	90
AlwI	GGATC	3 cut(s)	397, 932, 945
AlwNI	CAGNNNCTG	1 cut(s)	956
AoxI	GGCC	4 cut(s)	64, 217, 408, 624
ApaI	GGGCCC	1 cut(s)	628
ApeKI	GCWGC	1 cut(s)	947
ApoI	RAATTY	3 cut(s)	240, 992, 1139
AsiGI	ACCGGT	1 cut(s)	184
AspS9I	GGNCC	2 cut(s)	624, 625
AsuHPI	GGTGA	8 cut(s)	174, 199, 517, 628, 734, 1022, 1118, 1169
AxyI	CCTNAGG	2 cut(s)	612, 1252
BaeGI	GKGCMC	2 cut(s)	123, 628
BaeI	ACNNNNGTAYC	2 cut(s)	422, 455
BamHI	GGATCC	1 cut(s)	937
BanII	GRGCYC	2 cut(s)	628, 756
BbsI	GAAGAC	3 cut(s)	599, 890, 936
Bbv12I	GWGCWC	1 cut(s)	756
BbvI	GCAGC	1 cut(s)	959
BccI	CCATC	6 cut(s)	265, 287, 1024, 1069, 1120, 1154
BciT130I	CCWGG	1 cut(s)	1215
BciVI	GTATCC	1 cut(s)	535
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	1 cut(s)	723
BfuAI	ACCTGC	1 cut(s)	941
BfuI	GTATCC	1 cut(s)	535
BisI	GCNGC	2 cut(s)	411, 948
BlsI	GCNGC	2 cut(s)	412, 949
BmcAI	AGTACT	1 cut(s)	200
Bme1390I	CCNGG	1 cut(s)	1215
BmgT120I	GGNCC	2 cut(s)	624, 625
BmiI	GGNNCC	3 cut(s)	298, 626, 939
BmrFI	CCNGG	1 cut(s)	1215
BmrI	ACTGGG	1 cut(s)	1049
BmsI	GCATC	3 cut(s)	658, 1006, 1216
BmuI	ACTGGG	1 cut(s)	1049
BpiI	GAAGAC	3 cut(s)	599, 890, 936
BpmI	CTGGAG	1 cut(s)	927
Bpu10I	CCTNAGC	1 cut(s)	681
BpuEI	CTTGAG	1 cut(s)	713
BsaJI	CCNNGG	3 cut(s)	9, 123, 672
BsaWI	WCCGGW	2 cut(s)	184, 350
Bsc4I	CCNNNNNNNGG	3 cut(s)	191, 634, 950
Bse118I	RCCGGY	2 cut(s)	184, 728
Bse1I	ACTGG	2 cut(s)	196, 1044
Bse21I	CCTNAGG	2 cut(s)	612, 1252
Bse3DI	GCAATG	3 cut(s)	147, 1026, 1173
BseBI	CCWGG	1 cut(s)	1215
BseDI	CCNNGG	3 cut(s)	9, 123, 672
BseGI	GGATG	8 cut(s)	50, 133, 260, 422, 1035, 1080, 1131, 1231
BseLI	CCNNNNNNNGG	3 cut(s)	191, 634, 950
BseMI	GCAATG	3 cut(s)	147, 1026, 1173
BseMII	CTCAG	3 cut(s)	440, 603, 1266
BseNI	ACTGG	2 cut(s)	196, 1044
BseRI	GAGGAG	2 cut(s)	377, 829
BseSI	GKGCMC	2 cut(s)	123, 628
BseXI	GCAGC	1 cut(s)	959
BsgI	GTGCAG	1 cut(s)	753
BshFI	GGCC	4 cut(s)	66, 219, 410, 626
BshTI	ACCGGT	1 cut(s)	184
BsiHKAI	GWGCWC	1 cut(s)	756
BsiSI	CCGG	3 cut(s)	185, 351, 729
BslFI	GGGAC	2 cut(s)	326, 926
BslI	CCNNNNNNNGG	3 cut(s)	191, 634, 950
BsmAI	GTCTC	1 cut(s)	90
BsmBI	CGTCTC	1 cut(s)	90
BsmFI	GGGAC	2 cut(s)	326, 926
BsnI	GGCC	4 cut(s)	66, 219, 410, 626
Bsp120I	GGGCCC	1 cut(s)	624
Bsp1286I	GDGCHC	3 cut(s)	123, 628, 756
Bsp143I	GATC	3 cut(s)	389, 579, 937
Bsp19I	CCATGG	1 cut(s)	9
BspACI	CCGC	8 cut(s)	41, 146, 319, 411, 842, 890, 1053, 1071
BspANI	GGCC	4 cut(s)	66, 219, 410, 626
BspCNI	CTCAG	3 cut(s)	439, 604, 1265
BspLI	GGNNCC	3 cut(s)	298, 626, 939
BspMI	ACCTGC	1 cut(s)	941
BspPI	GGATC	3 cut(s)	397, 932, 945
BspQI	GCTCTTC	1 cut(s)	292
BsrDI	GCAATG	3 cut(s)	147, 1026, 1173
BsrFI	RCCGGY	2 cut(s)	184, 728
BsrI	ACTGG	2 cut(s)	196, 1044
BssAI	RCCGGY	2 cut(s)	184, 728
BssECI	CCNNGG	3 cut(s)	9, 123, 672
BssMI	GATC	3 cut(s)	389, 579, 937
BssT1I	CCWWGG	3 cut(s)	9, 123, 672
Bst2UI	CCWGG	1 cut(s)	1215
Bst4CI	ACNGT	3 cut(s)	156, 572, 655
Bst6I	CTCTTC	1 cut(s)	292
BstAPI	GCANNNNNTGC	1 cut(s)	953
BstC8I	GCNNGC	4 cut(s)	469, 1096, 1147, 1231
BstDEI	CTNAG	5 cut(s)	426, 472, 612, 681, 1252
BstDSI	CCRYGG	1 cut(s)	9
BstF5I	GGATG	8 cut(s)	50, 133, 260, 422, 1035, 1080, 1131, 1231
BstKTI	GATC	3 cut(s)	392, 582, 940
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	3 cut(s)	389, 579, 937
BstMWI	GCNNNNNNNGC	2 cut(s)	677, 953
BstNI	CCWGG	1 cut(s)	1215
BstNSI	RCATGY	2 cut(s)	272, 471
BstSCI	CCNGG	1 cut(s)	1213
BstSLI	GKGCMC	2 cut(s)	123, 628
BstV1I	GCAGC	1 cut(s)	959
BstV2I	GAAGAC	3 cut(s)	599, 890, 936
BstX2I	RGATCY	1 cut(s)	937
BstXI	CCANNNNNNTGG	1 cut(s)	16
BstYI	RGATCY	1 cut(s)	937
Bsu36I	CCTNAGG	2 cut(s)	612, 1252
BsuI	GTATCC	1 cut(s)	535
BsuRI	GGCC	4 cut(s)	66, 219, 410, 626
BtgI	CCRYGG	1 cut(s)	9
BtsCI	GGATG	8 cut(s)	50, 133, 260, 422, 1035, 1080, 1131, 1231
BtsIMutI	CAGTG	1 cut(s)	152
BveI	ACCTGC	1 cut(s)	941
Cac8I	GCNNGC	4 cut(s)	469, 1096, 1147, 1231
CaiI	CAGNNNCTG	1 cut(s)	956
Cfr10I	RCCGGY	2 cut(s)	184, 728
Cfr13I	GGNCC	2 cut(s)	624, 625
CseI	GACGC	1 cut(s)	686
Csp6I	GTAC	1 cut(s)	199
CspAI	ACCGGT	1 cut(s)	184
CspCI	CAANNNNNGTGG	2 cut(s)	255, 290
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	5 cut(s)	426, 472, 612, 681, 1252
DpnI	GATC	3 cut(s)	391, 581, 939
DpnII	GATC	3 cut(s)	389, 579, 937
EaeI	YGGCCR	1 cut(s)	408
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
EciI	GGCGGA	2 cut(s)	857, 1068
Ecl136II	GAGCTC	1 cut(s)	754
Eco130I	CCWWGG	3 cut(s)	9, 123, 672
Eco24I	GRGCYC	2 cut(s)	628, 756
Eco53kI	GAGCTC	1 cut(s)	754
Eco57I	CTGAAG	1 cut(s)	720
Eco81I	CCTNAGG	2 cut(s)	612, 1252
EcoICRI	GAGCTC	1 cut(s)	754
EcoRII	CCWGG	1 cut(s)	1213
EcoT14I	CCWWGG	3 cut(s)	9, 123, 672
EcoT38I	GRGCYC	2 cut(s)	628, 756
ErhI	CCWWGG	3 cut(s)	9, 123, 672
Esp3I	CGTCTC	1 cut(s)	90
FaqI	GGGAC	2 cut(s)	326, 926
FauI	CCCGC	2 cut(s)	326, 1064
Fnu4HI	GCNGC	2 cut(s)	411, 948
FokI	GGATG	8 cut(s)	37, 140, 247, 429, 1042, 1087, 1138, 1238
FriOI	GRGCYC	2 cut(s)	628, 756
Fsp4HI	GCNGC	2 cut(s)	411, 948
FspBI	CTAG	1 cut(s)	723
GluI	GCNGC	2 cut(s)	411, 948
GsuI	CTGGAG	1 cut(s)	927
HaeIII	GGCC	4 cut(s)	66, 219, 410, 626
HapII	CCGG	3 cut(s)	185, 351, 729
HgaI	GACGC	1 cut(s)	686
HincII	GTYRAC	1 cut(s)	159
HindII	GTYRAC	1 cut(s)	159
HindIII	AAGCTT	1 cut(s)	689
HinfI	GANTC	7 cut(s)	26, 47, 314, 479, 739, 1220, 1247
HpaII	CCGG	3 cut(s)	185, 351, 729
HphI	GGTGA	8 cut(s)	174, 199, 517, 628, 734, 1022, 1118, 1169
Hpy166II	GTNNAC	3 cut(s)	159, 925, 1037
Hpy188I	TCNGA	3 cut(s)	292, 429, 1225
Hpy188III	TCNNGA	5 cut(s)	611, 988, 1084, 1135, 1254
Hpy8I	GTNNAC	3 cut(s)	159, 925, 1037
HpyAV	CCTTC	3 cut(s)	695, 832, 1103
HpyCH4III	ACNGT	3 cut(s)	156, 572, 655
HpyCH4IV	ACGT	2 cut(s)	105, 323
HpyCH4V	TGCA	9 cut(s)	140, 213, 227, 251, 277, 600, 734, 1019, 1166
HpyF10VI	GCNNNNNNNGC	2 cut(s)	677, 953
HpyF3I	CTNAG	5 cut(s)	426, 472, 612, 681, 1252
HpySE526I	ACGT	2 cut(s)	105, 323
Kzo9I	GATC	3 cut(s)	389, 579, 937
LguI	GCTCTTC	1 cut(s)	292
Lsp1109I	GCAGC	1 cut(s)	959
LweI	GCATC	3 cut(s)	658, 1006, 1216
MaeI	CTAG	1 cut(s)	723
MaeII	ACGT	2 cut(s)	105, 323
MaeIII	GTNAC	3 cut(s)	150, 187, 496
MalI	GATC	3 cut(s)	391, 581, 939
MboI	GATC	3 cut(s)	389, 579, 937
MboII	GAAGA	8 cut(s)	279, 395, 503, 514, 599, 706, 895, 941
MflI	RGATCY	1 cut(s)	937
MhlI	GDGCHC	3 cut(s)	123, 628, 756
MluCI	AATT	7 cut(s)	114, 240, 421, 530, 591, 992, 1139
MlyI	GAGTC	3 cut(s)	41, 308, 473
MseI	TTAA	3 cut(s)	590, 687, 780
MslI	CAYNNNNRTG	2 cut(s)	747, 968
MspI	CCGG	3 cut(s)	185, 351, 729
MspR9I	CCNGG	1 cut(s)	1215
MvaI	CCWGG	1 cut(s)	1215
MwoI	GCNNNNNNNGC	2 cut(s)	677, 953
NcoI	CCATGG	1 cut(s)	9
NdeII	GATC	3 cut(s)	389, 579, 937
NlaIV	GGNNCC	3 cut(s)	298, 626, 939
NmuCI	GTSAC	2 cut(s)	150, 187
NspI	RCATGY	2 cut(s)	272, 471
PaeI	GCATGC	1 cut(s)	471
PaqCI	CACCTGC	1 cut(s)	941
PciI	ACATGT	1 cut(s)	268
PciSI	GCTCTTC	1 cut(s)	292
PcsI	WCGNNNNNNNCGW	1 cut(s)	768
PfeI	GAWTC	4 cut(s)	26, 739, 1220, 1247
PinAI	ACCGGT	1 cut(s)	184
PkrI	GCNGC	2 cut(s)	412, 949
PleI	GAGTC	3 cut(s)	41, 308, 473
PpsI	GAGTC	3 cut(s)	41, 308, 473
PscI	ACATGT	1 cut(s)	268
Psp124BI	GAGCTC	1 cut(s)	756
Psp6I	CCWGG	1 cut(s)	1213
PspGI	CCWGG	1 cut(s)	1213
PspN4I	GGNNCC	3 cut(s)	298, 626, 939
PspOMI	GGGCCC	1 cut(s)	624
PspPI	GGNCC	2 cut(s)	624, 625
PsrI	GAACNNNNNNTAC	2 cut(s)	503, 535
PstNI	CAGNNNCTG	1 cut(s)	956
PsuI	RGATCY	1 cut(s)	937
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	747, 968
SacI	GAGCTC	1 cut(s)	756
SapI	GCTCTTC	1 cut(s)	292
SaqAI	TTAA	3 cut(s)	590, 687, 780
SatI	GCNGC	2 cut(s)	411, 948
Sau3AI	GATC	3 cut(s)	389, 579, 937
Sau96I	GGNCC	2 cut(s)	624, 625
ScaI	AGTACT	1 cut(s)	200
SchI	GAGTC	3 cut(s)	41, 308, 473
ScrFI	CCNGG	1 cut(s)	1215
SduI	GDGCHC	3 cut(s)	123, 628, 756
SfaNI	GCATC	3 cut(s)	658, 1006, 1216
SgrAI	CRCCGGYG	1 cut(s)	184
SmiMI	CAYNNNNRTG	2 cut(s)	747, 968
SmlI	CTYRAG	1 cut(s)	692
SmoI	CTYRAG	1 cut(s)	692
SphI	GCATGC	1 cut(s)	471
Sse9I	AATT	7 cut(s)	114, 240, 421, 530, 591, 992, 1139
SsiI	CCGC	8 cut(s)	41, 146, 319, 411, 842, 890, 1053, 1071
SspMI	CTAG	1 cut(s)	723
SstI	GAGCTC	1 cut(s)	756
StyD4I	CCNGG	1 cut(s)	1213
StyI	CCWWGG	3 cut(s)	9, 123, 672
TaaI	ACNGT	3 cut(s)	156, 572, 655
TaiI	ACGT	2 cut(s)	108, 326
TaqI	TCGA	7 cut(s)	29, 356, 762, 771, 989, 1085, 1136
TasI	AATT	7 cut(s)	114, 240, 421, 530, 591, 992, 1139
TatI	WGTACW	1 cut(s)	198
TauI	GCSGC	1 cut(s)	413
TfiI	GAWTC	4 cut(s)	26, 739, 1220, 1247
Tru1I	TTAA	3 cut(s)	590, 687, 780
Tru9I	TTAA	3 cut(s)	590, 687, 780
TscAI	CASTG	1 cut(s)	159
TseFI	GTSAC	2 cut(s)	150, 187
TseI	GCWGC	1 cut(s)	947
Tsp45I	GTSAC	2 cut(s)	150, 187
TspDTI	ATGAA	3 cut(s)	234, 335, 700
TspRI	CASTG	1 cut(s)	159
XapI	RAATTY	3 cut(s)	240, 992, 1139
XceI	RCATGY	2 cut(s)	272, 471
XcmI	CCANNNNNNNNNTGG	1 cut(s)	535
XspI	CTAG	1 cut(s)	723
ZrmI	AGTACT	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.