Rmu_sc0006168.1_g000024

RING finger and CHY zinc finger domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006168.1
OG0005998
Physical Location & Seq
Forward (+)
67587 .. 70252
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1038 bp
atgtcgaccggccaaagctggcgtggcgcctcgccaacaggttcatataaaaaaggggaagaaggaaaccatcgaatttatttaatatatcagcttctgagggctttccactctctctctctttctctttctggtaataggtgggttttggaggaaatggagggcggatttttggagacccaagtgactgttggcaaggaacattcttgtgtggatgaacagtctgtcagggagaagggacctggggaatttgggtgcatgcattacagacggagatgcaagatcagagcaccttgttgtgatgagattttcgactgcaggcattgccataacgaagccaagaatgctttggaagttgaaccagttgatcgccatgatattcctcgccatgatctgaaaagggtcatctgttcattgtgcaacacagaacaagatgttcaacagcactgtagccaatgtggggtttgcatgggaaactacttttgccccaaatgcaagttttttgatgatgacgtttcgaaaaagcagtatcattgtgatcaatgcggcatctgcagaaccggaggtgcggagaactttttccactgtgacagatgtgggtgctgttactcaacagtgctgaaggattcacacaattgtgtggaaaaagcaatgcatcacaattgccctgtgtgctttgagtttctttttgatacgacagcagacattactgtcttaccatgtgggcacactatacatttggaatgtgtgaaagagatggagcggcattttcagtattcttgcccagtttgctcaaaatcgtactgtgatatgtcacgtgtgtgggaaaaactggaccacgagattgatgcgactccaatgcctccgatgtatcagaataagatggtctggatcctctgcaatgattgtggacaaacgtcagaggtaaattttcacattgtggcactcaaatgcctcaaatgcaaatcctacaatacgaggcagacacaaagagggccagcatcatgctcatcaagggtttcagagatggtgagatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000151 GO:0002039 GO:0003674 GO:0003824 GO:0004842 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010604 GO:0016567 GO:0016740 GO:0019222 GO:0019538 GO:0019787 GO:0019941 GO:0030162 GO:0030163 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031396 GO:0031398 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032434 GO:0032436 GO:0032446 GO:0032991 GO:0036211 GO:0042176 GO:0042802 GO:0042803 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045732 GO:0045862 GO:0046872 GO:0046914 GO:0046983 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051603 GO:0051865 GO:0060255 GO:0061136 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901800 GO:1902494 GO:1903050 GO:1903052 GO:1903320 GO:1903322 GO:1903362 GO:1903364 GO:1990234 GO:2000058 GO:2000060
KEGG Pathways
Metabolic & Signaling
ko04115 ko04120 ko05162 map04115 map04120 map05162
Pfam Domains
Protein Families
zf-CHY zf-RING_2 zf-RING_UBOX zinc_ribbon_6

Protein Analysis

345

Amino Acids

39.56

Weight (kDa)

6.66

Isoelectric Point (pI)

51.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CHY PF05495 86 - 160 7.3e-18 CHY zinc finger
zf-RING_2 PF13639 221 - 264 2.2e-07 Ring finger domain
zf-RING_5 PF14634 221 - 266 2e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 222 - 262 2.1e-07 RING-type zinc-finger
zinc_ribbon_6 PF14599 269 - 327 3.8e-27 Zinc-ribbon
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 710
AccB1I GGYRCC 1 cut(s) 26
AccBSI CCGCTC 1 cut(s) 763
AccI GTMKAC 1 cut(s) 5
AciI CCGC 4 cut(s) 165, 546, 569, 763
AclWI GGATC 2 cut(s) 886, 899
AcoI YGGCCR 1 cut(s) 10
AcsI RAATTY 3 cut(s) 75, 248, 928
AcuI CTGAAG 1 cut(s) 641
AcvI CACGTG 1 cut(s) 818
AcyI GRCGYC 1 cut(s) 27
AdeI CACNNNGTG 1 cut(s) 940
AfaI GTAC 1 cut(s) 803
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 2 cut(s) 359, 440
AjnI CCWGG 1 cut(s) 241
AleI CACNNNNGTG 2 cut(s) 636, 820
AluBI AGCT 2 cut(s) 18, 94
AluI AGCT 2 cut(s) 18, 94
Alw21I GWGCWC 1 cut(s) 292
Alw26I GTCTC 1 cut(s) 170
AlwI GGATC 2 cut(s) 886, 899
AlwNI CAGNNNCTG 1 cut(s) 97
AoxI GGCC 2 cut(s) 10, 995
ApoI RAATTY 3 cut(s) 75, 248, 928
Asp700I GAANNNNTTC 1 cut(s) 578
AspLEI GCGC 1 cut(s) 29
AspS9I GGNCC 3 cut(s) 239, 835, 995
AsuII TTCGAA 1 cut(s) 518
AvaII GGWCC 2 cut(s) 239, 835
BaeGI GKGCMC 1 cut(s) 729
BamHI GGATCC 1 cut(s) 891
BanI GGYRCC 1 cut(s) 26
BauI CACGAG 1 cut(s) 839
BbrPI CACGTG 1 cut(s) 818
Bbv12I GWGCWC 1 cut(s) 292
BccI CCATC 4 cut(s) 78, 751, 877, 1021
BcgI CGANNNNNNTGC 4 cut(s) 830, 841, 864, 875
BciT130I CCWGG 1 cut(s) 243
BclI TGATCA 1 cut(s) 538
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 3 cut(s) 316, 448, 553
BfoI RGCGCY 1 cut(s) 30
BisI GCNGC 2 cut(s) 547, 764
BlsI GCNGC 2 cut(s) 548, 765
Bme1390I CCNGG 1 cut(s) 243
Bme18I GGWCC 2 cut(s) 239, 835
BmgT120I GGNCC 3 cut(s) 239, 835, 995
BmiI GGNNCC 3 cut(s) 28, 240, 893
BmrFI CCNGG 1 cut(s) 243
BmrI ACTGGG 1 cut(s) 779
BmsI GCATC 5 cut(s) 266, 558, 664, 838, 1010
BmuI ACTGGG 1 cut(s) 779
BoxI GACNNNNGTC 1 cut(s) 916
Bpu14I TTCGAA 1 cut(s) 518
BsaAI YACGTR 1 cut(s) 818
BsaHI GRCGYC 1 cut(s) 27
BsaI GGTCTC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 560
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse118I RCCGGY 1 cut(s) 8
Bse1I ACTGG 3 cut(s) 362, 785, 837
Bse3DI GCAATG 3 cut(s) 322, 657, 907
BseBI CCWGG 1 cut(s) 243
BseDI CCNNGG 1 cut(s) 242
BseGI GGATG 1 cut(s) 220
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 3 cut(s) 322, 657, 907
BseMII CTCAG 1 cut(s) 89
BseNI ACTGG 3 cut(s) 362, 785, 837
BseSI GKGCMC 1 cut(s) 729
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 2 cut(s) 12, 997
BshNI GGYRCC 1 cut(s) 26
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 1 cut(s) 292
BsiSI CCGG 2 cut(s) 9, 561
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 460
BsmAI GTCTC 1 cut(s) 170
BsmFI GGGAC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 349
BsnI GGCC 2 cut(s) 12, 997
Bso31I GGTCTC 1 cut(s) 170
Bsp119I TTCGAA 1 cut(s) 518
Bsp1286I GDGCHC 2 cut(s) 292, 729
Bsp143I GATC 5 cut(s) 282, 367, 391, 538, 891
BspACI CCGC 4 cut(s) 165, 546, 569, 763
BspANI GGCC 2 cut(s) 12, 997
BspCNI CTCAG 1 cut(s) 90
BspLI GGNNCC 3 cut(s) 28, 240, 893
BspMAI CTGCAG 2 cut(s) 320, 557
BspPI GGATC 2 cut(s) 886, 899
BspT104I TTCGAA 1 cut(s) 518
BspT107I GGYRCC 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 170
BsrBI CCGCTC 1 cut(s) 763
BsrDI GCAATG 3 cut(s) 322, 657, 907
BsrFI RCCGGY 1 cut(s) 8
BsrI ACTGG 3 cut(s) 362, 785, 837
BssAI RCCGGY 1 cut(s) 8
BssECI CCNNGG 1 cut(s) 242
BssMI GATC 5 cut(s) 282, 367, 391, 538, 891
BssNI GRCGYC 1 cut(s) 27
BssSI CACGAG 1 cut(s) 839
Bst2BI CACGAG 1 cut(s) 839
Bst2UI CCWGG 1 cut(s) 243
Bst4CI ACNGT 7 cut(s) 190, 222, 449, 587, 616, 712, 806
BstACI GRCGYC 1 cut(s) 27
BstAPI GCANNNNNTGC 1 cut(s) 324
BstBAI YACGTR 1 cut(s) 818
BstBI TTCGAA 1 cut(s) 518
BstC8I GCNNGC 4 cut(s) 20, 260, 320, 999
BstDEI CTNAG 1 cut(s) 98
BstF5I GGATG 1 cut(s) 220
BstH2I RGCGCY 1 cut(s) 30
BstHHI GCGC 1 cut(s) 29
BstKTI GATC 5 cut(s) 285, 370, 394, 541, 894
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 5 cut(s) 282, 367, 391, 538, 891
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 8 cut(s) 24, 324, 344, 492, 552, 672, 789, 960
BstNI CCWGG 1 cut(s) 243
BstNSI RCATGY 1 cut(s) 262
BstPAI GACNNNNGTC 1 cut(s) 916
BstSCI CCNGG 1 cut(s) 241
BstSFI CTRYAG 3 cut(s) 316, 448, 553
BstSLI GKGCMC 1 cut(s) 729
BstX2I RGATCY 1 cut(s) 891
BstYI RGATCY 1 cut(s) 891
BsuRI GGCC 2 cut(s) 12, 997
BtsCI GGATG 1 cut(s) 220
BtsIMutI CAGTG 3 cut(s) 445, 583, 621
Cac8I GCNNGC 4 cut(s) 20, 260, 320, 999
CaiI CAGNNNCTG 1 cut(s) 97
CfoI GCGC 1 cut(s) 29
Cfr10I RCCGGY 1 cut(s) 8
Cfr13I GGNCC 3 cut(s) 239, 835, 995
Csp6I GTAC 1 cut(s) 802
CspCI CAANNNNNGTGG 2 cut(s) 889, 924
CviAII CATG 6 cut(s) 259, 374, 389, 469, 720, 1005
CviJI RGCY 7 cut(s) 12, 18, 94, 104, 338, 453, 997
CviKI_1 RGCY 7 cut(s) 12, 18, 94, 104, 338, 453, 997
CviQI GTAC 1 cut(s) 802
DdeI CTNAG 1 cut(s) 98
DinI GGCGCC 1 cut(s) 28
DpnI GATC 5 cut(s) 284, 369, 393, 540, 893
DpnII GATC 5 cut(s) 282, 367, 391, 538, 891
DraIII CACNNNGTG 1 cut(s) 940
DrdI GACNNNNNNGTC 1 cut(s) 710
DseDI GACNNNNNNGTC 1 cut(s) 710
EaeI YGGCCR 1 cut(s) 10
EciI GGCGGA 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 170
Eco47I GGWCC 2 cut(s) 239, 835
Eco57I CTGAAG 1 cut(s) 641
Eco72I CACGTG 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 239
EcoRII CCWGG 1 cut(s) 241
EcoT22I ATGCAT 2 cut(s) 264, 657
EgeI GGCGCC 1 cut(s) 28
EheI GGCGCC 1 cut(s) 28
FaeI CATG 6 cut(s) 262, 377, 392, 472, 723, 1008
FaqI GGGAC 1 cut(s) 252
FatI CATG 6 cut(s) 258, 373, 388, 468, 719, 1004
FbaI TGATCA 1 cut(s) 538
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 2 cut(s) 547, 764
FokI GGATG 1 cut(s) 227
Fsp4HI GCNGC 2 cut(s) 547, 764
GlaI GCGC 1 cut(s) 28
GluI GCNGC 2 cut(s) 547, 764
HaeII RGCGCY 1 cut(s) 30
HaeIII GGCC 2 cut(s) 12, 997
HapII CCGG 2 cut(s) 9, 561
HhaI GCGC 1 cut(s) 29
Hin1I GRCGYC 1 cut(s) 27
Hin1II CATG 6 cut(s) 262, 377, 392, 472, 723, 1008
Hin6I GCGC 1 cut(s) 27
HinP1I GCGC 1 cut(s) 27
HincII GTYRAC 1 cut(s) 6
HindII GTYRAC 1 cut(s) 6
HinfI GANTC 2 cut(s) 626, 853
HpaII CCGG 2 cut(s) 9, 561
Hpy166II GTNNAC 2 cut(s) 6, 911
Hpy188I TCNGA 7 cut(s) 99, 287, 396, 867, 876, 922, 1024
Hpy188III TCNNGA 1 cut(s) 889
Hpy8I GTNNAC 2 cut(s) 6, 911
HpyAV CCTTC 3 cut(s) 56, 229, 616
HpyCH4III ACNGT 7 cut(s) 190, 222, 449, 587, 616, 712, 806
HpyCH4IV ACGT 3 cut(s) 513, 817, 917
HpyF10VI GCNNNNNNNGC 8 cut(s) 24, 324, 344, 492, 552, 672, 789, 960
HpyF3I CTNAG 1 cut(s) 98
HpySE526I ACGT 3 cut(s) 513, 817, 917
Hsp92I GRCGYC 1 cut(s) 27
Hsp92II CATG 6 cut(s) 262, 377, 392, 472, 723, 1008
HspAI GCGC 1 cut(s) 27
KasI GGCGCC 1 cut(s) 26
Ksp22I TGATCA 1 cut(s) 538
Kzo9I GATC 5 cut(s) 282, 367, 391, 538, 891
LmnI GCTCC 1 cut(s) 760
LweI GCATC 5 cut(s) 266, 558, 664, 838, 1010
MaeII ACGT 3 cut(s) 513, 817, 917
MaeIII GTNAC 4 cut(s) 184, 587, 605, 813
MalI GATC 5 cut(s) 284, 369, 393, 540, 893
MbiI CCGCTC 1 cut(s) 763
MboI GATC 5 cut(s) 282, 367, 391, 538, 891
MboII GAAGA 1 cut(s) 71
MfeI CAATTG 2 cut(s) 634, 661
MflI RGATCY 1 cut(s) 891
MhlI GDGCHC 2 cut(s) 292, 729
MluCI AATT 5 cut(s) 75, 248, 634, 661, 928
Mly113I GGCGCC 1 cut(s) 27
MlyI GAGTC 1 cut(s) 847
Mph1103I ATGCAT 2 cut(s) 264, 657
MroXI GAANNNNTTC 1 cut(s) 578
MseI TTAA 1 cut(s) 83
MslI CAYNNNNRTG 4 cut(s) 207, 636, 820, 949
MspI CCGG 2 cut(s) 9, 561
MspR9I CCNGG 1 cut(s) 243
MunI CAATTG 2 cut(s) 634, 661
Mva1269I GAATGC 1 cut(s) 349
MvaI CCWGG 1 cut(s) 243
MwoI GCNNNNNNNGC 8 cut(s) 24, 324, 344, 492, 552, 672, 789, 960
NarI GGCGCC 1 cut(s) 27
NdeII GATC 5 cut(s) 282, 367, 391, 538, 891
NlaIII CATG 6 cut(s) 262, 377, 392, 472, 723, 1008
NlaIV GGNNCC 3 cut(s) 28, 240, 893
NmuCI GTSAC 3 cut(s) 184, 587, 813
NsiI ATGCAT 2 cut(s) 264, 657
NspI RCATGY 1 cut(s) 262
NspV TTCGAA 1 cut(s) 518
OliI CACNNNNGTG 2 cut(s) 636, 820
PaeI GCATGC 1 cut(s) 262
PctI GAATGC 1 cut(s) 349
PdmI GAANNNNTTC 1 cut(s) 578
PfeI GAWTC 1 cut(s) 626
PkrI GCNGC 2 cut(s) 548, 765
PleI GAGTC 1 cut(s) 847
PluTI GGCGCC 1 cut(s) 30
PmaCI CACGTG 1 cut(s) 818
PmlI CACGTG 1 cut(s) 818
PpsI GAGTC 1 cut(s) 847
Ppu21I YACGTR 1 cut(s) 818
PpuMI RGGWCCY 1 cut(s) 239
PshAI GACNNNNGTC 1 cut(s) 916
Psp5II RGGWCCY 1 cut(s) 239
Psp6I CCWGG 1 cut(s) 241
PspCI CACGTG 1 cut(s) 818
PspGI CCWGG 1 cut(s) 241
PspN4I GGNNCC 3 cut(s) 28, 240, 893
PspPI GGNCC 3 cut(s) 239, 835, 995
PspPPI RGGWCCY 1 cut(s) 239
PstI CTGCAG 2 cut(s) 320, 557
PstNI CAGNNNCTG 1 cut(s) 97
PsuI RGATCY 1 cut(s) 891
RsaI GTAC 1 cut(s) 803
RsaNI GTAC 1 cut(s) 802
RseI CAYNNNNRTG 4 cut(s) 207, 636, 820, 949
SalI GTCGAC 1 cut(s) 4
SaqAI TTAA 1 cut(s) 83
SatI GCNGC 2 cut(s) 547, 764
Sau3AI GATC 5 cut(s) 282, 367, 391, 538, 891
Sau96I GGNCC 3 cut(s) 239, 835, 995
SchI GAGTC 1 cut(s) 847
ScrFI CCNGG 1 cut(s) 243
SduI GDGCHC 2 cut(s) 292, 729
SfaNI GCATC 5 cut(s) 266, 558, 664, 838, 1010
SfcI CTRYAG 3 cut(s) 316, 448, 553
SfoI GGCGCC 1 cut(s) 28
SfuI TTCGAA 1 cut(s) 518
SinI GGWCC 2 cut(s) 239, 835
SmiMI CAYNNNNRTG 4 cut(s) 207, 636, 820, 949
SphI GCATGC 1 cut(s) 262
Sse9I AATT 5 cut(s) 75, 248, 634, 661, 928
SsiI CCGC 4 cut(s) 165, 546, 569, 763
SspDI GGCGCC 1 cut(s) 26
StyD4I CCNGG 1 cut(s) 241
TaaI ACNGT 7 cut(s) 190, 222, 449, 587, 616, 712, 806
TaiI ACGT 3 cut(s) 516, 820, 920
TaqI TCGA 4 cut(s) 5, 73, 312, 518
TasI AATT 5 cut(s) 75, 248, 634, 661, 928
TauI GCSGC 2 cut(s) 549, 766
TfiI GAWTC 1 cut(s) 626
Tru1I TTAA 1 cut(s) 83
Tru9I TTAA 1 cut(s) 83
TscAI CASTG 3 cut(s) 452, 590, 621
TseFI GTSAC 3 cut(s) 184, 587, 813
Tsp45I GTSAC 3 cut(s) 184, 587, 813
TspDTI ATGAA 3 cut(s) 33, 231, 402
TspGWI ACGGA 1 cut(s) 286
TspRI CASTG 3 cut(s) 452, 590, 621
VpaK11BI GGWCC 2 cut(s) 239, 835
XapI RAATTY 3 cut(s) 75, 248, 928
XceI RCATGY 1 cut(s) 262
XcmI CCANNNNNNNNNTGG 3 cut(s) 20, 188, 346
XmiI GTMKAC 1 cut(s) 5
XmnI GAANNNNTTC 1 cut(s) 578
Zsp2I ATGCAT 2 cut(s) 264, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.