Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006223.1

Orthogroup ID

OG0004271

Physical Location & Seq

Genomic Coordinates Forward (+)

30255 .. 33228

Gene Structure 2974 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

atggggaaaagacttcatgttaaagtcattgctgaggttgacatttacaagtacgctccttgggatcttccagacaaatcttgctggcgatttggagacctaaaatggtacttcttttctcctatagaaaagaaatatgcaactggggctagagtgaatcgtgccactgaagctgggtactggaaaatgtcaggaaaggatagatctgttaattacaatggtgaagtggtcggctggatcaagtctttagttttttacacaggtcgaccttcacgaggagaacggacagattgggttctgcatgagtataggcttgaagataagggcgtgcctcaggaatcatatgttttgtgtgtacttttccaaaaggaagggcaaggaccaaaaaatggtgcacaatatggtgcaccctttaaagaggaagattggactgatgatgaggttgaaatctgtttagacacagtcccacatgcaaataggcctgagccagaccttgttctgcctaggggatataatagttccagtcttactagcacagatcgccctgagggtatttgcataggcccttcatctgaatcctgcatatcagatgttgtaccaccttcttgcaatattttccgctcagttcccagtaattctgttacaacagagaagcagtctgtttcagccaatgctgatatcctgtccatgttagattgctttgtggaagaaagcactttccttatcaatggcaatgacaaaaataaggagcttgataacctgattcattctggaaatacaagtaccacacagaagcttgatattctgaattctagaaatgcaaatgctacagaagagcgtgataatattcctcattctggaaatgcgaatgctacagatcattttaatagaagtgatatttatagagatttagcagacttgggcaacttgggtagagttgaagacggtgagggttttttggatttgttcggatcgaagcggcggcggactagcttcatgctcactgattcaggaagggcgagggcggcggcgaaatgggttcatcccagatggcggcaacggctgtgcgggcaccgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0008150 GO:0009314 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

359

Amino Acids

40.55

Weight (kDa)

6.11

Isoelectric Point (pI)

47.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	2 - 105	5.5e-31	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004271)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G64060
fragaria_vesca	FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320 FvH4_2g13320
malus_domestica	MD04G1043700.v1.1 MD05G1029800.v1.1 MD10G1030400.v1.1
prunus_persica	Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.7G092400_v2.0.a1 Prupe.8G035300_v2.0.a1 Prupe.8G035400_v2.0.a1 Prupe.8G035500_v2.0.a1
pyrus_communis	pycom05g02120 pycom10g01970
rosa_chinensis	RchiOBHm_Chr6g0274751
rosa_laevigata	RLG00000013525
rosa_multiflora	Rmu_sc0006223.1_g000007
rosa_roxburghii	Rroxscaffold_7G00193970
rosa_rugosa	Rorug06G0083700 Rorug06G0083800
rosa_samantha	Rh6AG199600 Rh6BG203300 Rh6CG203500 Rh6DG195000
rosa_wichuraiana	Rw6G017350

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1071
AccB7I	CCANNNNNTGG	1 cut(s)	389
AccBSI	CCGCTC	1 cut(s)	621
AccI	GTMKAC	1 cut(s)	265
AciI	CCGC	8 cut(s)	619, 979, 982, 985, 1025, 1028, 1054, 1068
AclWI	GGATC	3 cut(s)	72, 245, 979
AcsI	RAATTY	1 cut(s)	808
AcuI	CTGAAG	1 cut(s)	189
AfaI	GTAC	6 cut(s)	53, 110, 179, 357, 597, 784
AfiI	CCNNNNNNNGG	4 cut(s)	275, 389, 857, 1053
AgsI	TTSAA	3 cut(s)	317, 446, 941
AluBI	AGCT	4 cut(s)	173, 751, 796, 993
AluI	AGCT	4 cut(s)	173, 751, 796, 993
Alw21I	GWGCWC	2 cut(s)	397, 409
Alw26I	GTCTC	1 cut(s)	90
Alw44I	GTGCAC	2 cut(s)	393, 405
AlwI	GGATC	3 cut(s)	72, 245, 979
AoxI	GGCC	2 cut(s)	479, 562
ApaLI	GTGCAC	2 cut(s)	393, 405
ApoI	RAATTY	1 cut(s)	808
AspA2I	CCTAGG	1 cut(s)	503
AspS9I	GGNCC	2 cut(s)	380, 563
AsuHPI	GGTGA	2 cut(s)	233, 959
AvaII	GGWCC	1 cut(s)	380
AvrII	CCTAGG	1 cut(s)	503
AxyI	CCTNAGG	2 cut(s)	333, 546
BaeGI	GKGCMC	3 cut(s)	397, 409, 1074
BanI	GGYRCC	1 cut(s)	1071
BauI	CACGAG	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	948
Bbv12I	GWGCWC	2 cut(s)	397, 409
BbvCI	CCTCAGC	1 cut(s)	33
BccI	CCATC	1 cut(s)	1044
BceAI	ACGGC	1 cut(s)	1076
BcoDI	GTCTC	1 cut(s)	90
BfaI	CTAG	5 cut(s)	150, 504, 531, 813, 990
BfmI	CTRYAG	3 cut(s)	123, 828, 873
BglII	AGATCT	1 cut(s)	203
BisI	GCNGC	5 cut(s)	980, 983, 1026, 1029, 1055
BlnI	CCTAGG	1 cut(s)	503
BlsI	GCNGC	5 cut(s)	981, 984, 1027, 1030, 1056
Bme18I	GGWCC	1 cut(s)	380
BmgT120I	GGNCC	2 cut(s)	380, 563
BmiI	GGNNCC	1 cut(s)	1073
BmrI	ACTGGG	2 cut(s)	153, 624
BmuI	ACTGGG	2 cut(s)	153, 624
BpiI	GAAGAC	1 cut(s)	948
Bpu10I	CCTNAGC	2 cut(s)	33, 483
BsaI	GGTCTC	1 cut(s)	90
BsaJI	CCNNGG	2 cut(s)	59, 503
Bsc4I	CCNNNNNNNGG	4 cut(s)	275, 389, 857, 1053
Bse1I	ACTGG	4 cut(s)	148, 185, 522, 630
Bse21I	CCTNAGG	2 cut(s)	333, 546
Bse3DI	GCAATG	2 cut(s)	27, 739
BseDI	CCNNGG	2 cut(s)	59, 503
BseGI	GGATG	1 cut(s)	1042
BseLI	CCNNNNNNNGG	4 cut(s)	275, 389, 857, 1053
BseMI	GCAATG	2 cut(s)	27, 739
BseMII	CTCAG	5 cut(s)	24, 347, 474, 537, 636
BseNI	ACTGG	4 cut(s)	148, 185, 522, 630
BseRI	GAGGAG	1 cut(s)	291
BseSI	GKGCMC	3 cut(s)	397, 409, 1074
BseYI	CCCAGC	1 cut(s)	173
BshFI	GGCC	2 cut(s)	481, 564
BshNI	GGYRCC	1 cut(s)	1071
BsiHKAI	GWGCWC	2 cut(s)	397, 409
BslFI	GGGAC	1 cut(s)	449
BslI	CCNNNNNNNGG	4 cut(s)	275, 389, 857, 1053
BsmAI	GTCTC	1 cut(s)	90
BsmFI	GGGAC	1 cut(s)	449
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	2 cut(s)	481, 564
Bso31I	GGTCTC	1 cut(s)	90
Bsp1286I	GDGCHC	3 cut(s)	397, 409, 1074
Bsp143I	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
BspACI	CCGC	8 cut(s)	619, 979, 982, 985, 1025, 1028, 1054, 1068
BspANI	GGCC	2 cut(s)	481, 564
BspCNI	CTCAG	5 cut(s)	25, 346, 475, 538, 635
BspLI	GGNNCC	1 cut(s)	1073
BspPI	GGATC	3 cut(s)	72, 245, 979
BspQI	GCTCTTC	1 cut(s)	828
BspT107I	GGYRCC	1 cut(s)	1071
BspTNI	GGTCTC	1 cut(s)	90
BsrBI	CCGCTC	1 cut(s)	621
BsrDI	GCAATG	2 cut(s)	27, 739
BsrI	ACTGG	4 cut(s)	148, 185, 522, 630
BssECI	CCNNGG	2 cut(s)	59, 503
BssMI	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
BssSI	CACGAG	1 cut(s)	273
BssT1I	CCWWGG	2 cut(s)	59, 503
Bst2BI	CACGAG	1 cut(s)	273
Bst4CI	ACNGT	3 cut(s)	463, 947, 1076
Bst6I	CTCTTC	1 cut(s)	828
BstC8I	GCNNGC	3 cut(s)	86, 329, 1070
BstDEI	CTNAG	5 cut(s)	33, 333, 483, 546, 622
BstENI	CCTNNNNNAGG	1 cut(s)	273
BstF5I	GGATG	1 cut(s)	1042
BstKTI	GATC	6 cut(s)	67, 206, 240, 541, 880, 974
BstMAI	GTCTC	1 cut(s)	90
BstMBI	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
BstMWI	GCNNNNNNNGC	6 cut(s)	146, 170, 540, 1025, 1060, 1069
BstNSI	RCATGY	1 cut(s)	473
BstSFI	CTRYAG	3 cut(s)	123, 828, 873
BstSLI	GKGCMC	3 cut(s)	397, 409, 1074
BstV2I	GAAGAC	1 cut(s)	948
BstX2I	RGATCY	2 cut(s)	64, 203
BstYI	RGATCY	2 cut(s)	64, 203
Bsu36I	CCTNAGG	2 cut(s)	333, 546
BsuRI	GGCC	2 cut(s)	481, 564
BtsCI	GGATG	1 cut(s)	1042
BtsIMutI	CAGTG	2 cut(s)	165, 1002
Cac8I	GCNNGC	3 cut(s)	86, 329, 1070
Cfr13I	GGNCC	2 cut(s)	380, 563
Csp6I	GTAC	6 cut(s)	52, 109, 178, 356, 596, 783
CviAII	CATG	5 cut(s)	17, 302, 470, 688, 997
CviQI	GTAC	6 cut(s)	52, 109, 178, 356, 596, 783
DdeI	CTNAG	5 cut(s)	33, 333, 483, 546, 622
DpnI	GATC	6 cut(s)	66, 205, 239, 540, 879, 973
DpnII	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
DraI	TTTAAA	1 cut(s)	415
Eam1104I	CTCTTC	1 cut(s)	828
EarI	CTCTTC	1 cut(s)	828
EciI	GGCGGA	1 cut(s)	1000
Eco130I	CCWWGG	2 cut(s)	59, 503
Eco147I	AGGCCT	1 cut(s)	481
Eco31I	GGTCTC	1 cut(s)	90
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	1 cut(s)	380
Eco57I	CTGAAG	1 cut(s)	189
Eco81I	CCTNAGG	2 cut(s)	333, 546
EcoNI	CCTNNNNNAGG	1 cut(s)	273
EcoO109I	RGGNCCY	1 cut(s)	563
EcoRI	GAATTC	1 cut(s)	808
EcoRV	GATATC	1 cut(s)	679
EcoT14I	CCWWGG	2 cut(s)	59, 503
ErhI	CCWWGG	2 cut(s)	59, 503
FaeI	CATG	5 cut(s)	20, 305, 473, 691, 1000
FaqI	GGGAC	1 cut(s)	449
FatI	CATG	5 cut(s)	16, 301, 469, 687, 996
FauI	CCCGC	1 cut(s)	1061
FauNDI	CATATG	1 cut(s)	343
FblI	GTMKAC	1 cut(s)	265
Fnu4HI	GCNGC	5 cut(s)	980, 983, 1026, 1029, 1055
FokI	GGATG	1 cut(s)	1029
Fsp4HI	GCNGC	5 cut(s)	980, 983, 1026, 1029, 1055
FspBI	CTAG	5 cut(s)	150, 504, 531, 813, 990
GluI	GCNGC	5 cut(s)	980, 983, 1026, 1029, 1055
GsaI	CCCAGC	1 cut(s)	177
HaeIII	GGCC	2 cut(s)	481, 564
Hin1II	CATG	5 cut(s)	20, 305, 473, 691, 1000
HincII	GTYRAC	2 cut(s)	40, 266
HindII	GTYRAC	2 cut(s)	40, 266
HindIII	AAGCTT	1 cut(s)	794
HinfI	GANTC	5 cut(s)	157, 338, 575, 763, 1007
HphI	GGTGA	2 cut(s)	233, 959
Hpy166II	GTNNAC	5 cut(s)	40, 266, 356, 395, 407
Hpy188I	TCNGA	4 cut(s)	574, 589, 807, 971
Hpy188III	TCNNGA	8 cut(s)	71, 192, 273, 335, 771, 813, 858, 1011
Hpy8I	GTNNAC	5 cut(s)	40, 266, 356, 395, 407
HpyAV	CCTTC	5 cut(s)	279, 365, 576, 612, 1008
HpyCH4III	ACNGT	3 cut(s)	463, 947, 1076
HpyCH4V	TGCA	9 cut(s)	140, 301, 395, 407, 473, 558, 582, 609, 821
HpyF10VI	GCNNNNNNNGC	6 cut(s)	146, 170, 540, 1025, 1060, 1069
HpyF3I	CTNAG	5 cut(s)	33, 333, 483, 546, 622
Hsp92II	CATG	5 cut(s)	20, 305, 473, 691, 1000
Kzo9I	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
LguI	GCTCTTC	1 cut(s)	828
LmnI	GCTCC	2 cut(s)	61, 748
MaeI	CTAG	5 cut(s)	150, 504, 531, 813, 990
MaeIII	GTNAC	1 cut(s)	640
MalI	GATC	6 cut(s)	66, 205, 239, 540, 879, 973
MbiI	CCGCTC	1 cut(s)	621
MboI	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
MboII	GAAGA	6 cut(s)	59, 329, 434, 719, 845, 953
MflI	RGATCY	2 cut(s)	64, 203
MhlI	GDGCHC	3 cut(s)	397, 409, 1074
MluCI	AATT	3 cut(s)	211, 634, 808
MnlI	CCTC	9 cut(s)	28, 269, 342, 412, 433, 541, 861, 943, 1014
MseI	TTAA	4 cut(s)	21, 210, 414, 885
Mva1269I	GAATGC	1 cut(s)	874
MwoI	GCNNNNNNNGC	6 cut(s)	146, 170, 540, 1025, 1060, 1069
NdeI	CATATG	1 cut(s)	343
NdeII	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
NlaIII	CATG	5 cut(s)	20, 305, 473, 691, 1000
NlaIV	GGNNCC	1 cut(s)	1073
NspI	RCATGY	1 cut(s)	473
PceI	AGGCCT	1 cut(s)	481
PciSI	GCTCTTC	1 cut(s)	828
PcsI	WCGNNNNNNNCGW	1 cut(s)	271
PctI	GAATGC	1 cut(s)	874
PfeI	GAWTC	5 cut(s)	157, 338, 575, 763, 1007
PflFI	GACNNNGTC	1 cut(s)	461
PflMI	CCANNNNNTGG	1 cut(s)	389
PkrI	GCNGC	5 cut(s)	981, 984, 1027, 1030, 1056
PspFI	CCCAGC	1 cut(s)	173
PspN4I	GGNNCC	1 cut(s)	1073
PspPI	GGNCC	2 cut(s)	380, 563
PsuI	RGATCY	2 cut(s)	64, 203
PsyI	GACNNNGTC	1 cut(s)	461
RsaI	GTAC	6 cut(s)	53, 110, 179, 357, 597, 784
RsaNI	GTAC	6 cut(s)	52, 109, 178, 356, 596, 783
SalI	GTCGAC	1 cut(s)	264
SapI	GCTCTTC	1 cut(s)	828
SaqAI	TTAA	4 cut(s)	21, 210, 414, 885
SatI	GCNGC	5 cut(s)	980, 983, 1026, 1029, 1055
Sau3AI	GATC	6 cut(s)	64, 203, 237, 538, 877, 971
Sau96I	GGNCC	2 cut(s)	380, 563
SduI	GDGCHC	3 cut(s)	397, 409, 1074
SfcI	CTRYAG	3 cut(s)	123, 828, 873
SinI	GGWCC	1 cut(s)	380
Sse9I	AATT	3 cut(s)	211, 634, 808
SseBI	AGGCCT	1 cut(s)	481
SsiI	CCGC	8 cut(s)	619, 979, 982, 985, 1025, 1028, 1054, 1068
SspI	AATATT	2 cut(s)	613, 847
SspMI	CTAG	5 cut(s)	150, 504, 531, 813, 990
StuI	AGGCCT	1 cut(s)	481
StyI	CCWWGG	2 cut(s)	59, 503
TaaI	ACNGT	3 cut(s)	463, 947, 1076
TaqI	TCGA	2 cut(s)	265, 974
TasI	AATT	3 cut(s)	211, 634, 808
TatI	WGTACW	1 cut(s)	355
TauI	GCSGC	5 cut(s)	982, 985, 1028, 1031, 1057
TfiI	GAWTC	5 cut(s)	157, 338, 575, 763, 1007
Tru1I	TTAA	4 cut(s)	21, 210, 414, 885
Tru9I	TTAA	4 cut(s)	21, 210, 414, 885
TscAI	CASTG	2 cut(s)	172, 1009
TspDTI	ATGAA	5 cut(s)	5, 558, 755, 985, 1031
TspGWI	ACGGA	1 cut(s)	298
TspRI	CASTG	2 cut(s)	172, 1009
Tth111I	GACNNNGTC	1 cut(s)	461
Van91I	CCANNNNNTGG	1 cut(s)	389
VneI	GTGCAC	2 cut(s)	393, 405
VpaK11BI	GGWCC	1 cut(s)	380
XagI	CCTNNNNNAGG	1 cut(s)	273
XapI	RAATTY	1 cut(s)	808
XbaI	TCTAGA	1 cut(s)	812
XceI	RCATGY	1 cut(s)	473
XmaJI	CCTAGG	1 cut(s)	503
XmiI	GTMKAC	1 cut(s)	265
XspI	CTAG	5 cut(s)	150, 504, 531, 813, 990

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.