Rmu_sc0006314.1_g000006

Belongs to the glucose-6-phosphate 1-epimerase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006314.1
OG0008798
Physical Location & Seq
Reverse (-)
27152 .. 30638
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 963 bp
atggcgatggcttctatgcacatttcactccctaccctcactccaccaaactttcgccgactcaatcggtattgtttccaagcacaaaaaaggtcccctgttattgctatggccagttcatacaaggagattgctacttctggagtgaaggttacagaaggagaaggaagcttacccaaggtcgttttgaccgggtcaaatggcagtgaggcagatgtgtatctattcggtggatgtgttacttcttggaaagtaccaaatgggaaagacctcctttttgtcagacctgatgctgtgttcaatgggaagaaaccaatcagtggaggagttccacattgtttcccacagtttggacccggcccaatgcagcagcatggatttgcaagaaatctggactggttgatcgttgattctgaaaatgtgcaaggagatcctgtcttaactttggaactgaaagatggtccttacagtcgtgccatgtgggatttcagctttcaagctttgtacaagattactttgcaaacaaagagcctttccaccgaacttgttattaaaaatacagacagcaagccattttcattcagtaccgcgctgcatacttacttcagtgcttctgcacaagcagcatcagttaaaggtttgaaaggccgcaaaacactaaataaagatcctgatcccaagaatccattggagggcaaggaagaaagggatgcggtcacttttcctggatttgtggattgtgtatacctggatgcccctaatgagttgcatctcgataatggcttaggtgatataatatctatcaagaacacaaattggtcggacgctgttttatggaacccatatctgacgatggaagcgtgctacaaggattttgtttgtgtggaaaatgcacagattggaaatgttcagctagagcctggtaactcttggactgctacacagcatctcagcatcaactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00010 ko01100 ko01110 ko01120 ko01130 map00010 map01100 map01110 map01120 map01130
Pfam Domains
Protein Families
Aldose_epim

Protein Analysis

320

Amino Acids

35.17

Weight (kDa)

6.31

Isoelectric Point (pI)

25.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldose_epim PF01263 60 - 317 1e-44 Aldose 1-epimerase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 320, 350
AccI GTMKAC 1 cut(s) 744
AccII CGCG 1 cut(s) 590
AciI CCGC 3 cut(s) 588, 649, 713
AclWI GGATC 3 cut(s) 425, 662, 668
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 589
AfaI GTAC 3 cut(s) 255, 506, 586
AfiI CCNNNNNNNGG 3 cut(s) 320, 350, 692
AgsI TTSAA 3 cut(s) 301, 497, 643
AjnI CCWGG 3 cut(s) 724, 747, 919
AluBI AGCT 4 cut(s) 171, 492, 500, 913
AluI AGCT 4 cut(s) 171, 492, 500, 913
AlwI GGATC 3 cut(s) 425, 662, 668
AoxI GGCC 3 cut(s) 111, 358, 646
ApeKI GCWGC 4 cut(s) 367, 370, 592, 623
ArsI GACNNNNNNTTYG 2 cut(s) 260, 292
AspLEI GCGC 1 cut(s) 592
AspS9I GGNCC 4 cut(s) 93, 353, 359, 461
AsuC2I CCSGG 2 cut(s) 193, 357
AsuHPI GGTGA 1 cut(s) 800
AvaII GGWCC 3 cut(s) 93, 353, 461
BalI TGGCCA 1 cut(s) 113
BarI GAAGNNNNNNTAC 2 cut(s) 156, 188
BbvI GCAGC 4 cut(s) 379, 382, 579, 635
BccI CCATC 2 cut(s) 452, 847
BciT130I CCWGG 3 cut(s) 726, 749, 921
BcnI CCSGG 2 cut(s) 193, 357
BfaI CTAG 1 cut(s) 914
BisI GCNGC 5 cut(s) 368, 371, 593, 624, 649
BlsI GCNGC 5 cut(s) 369, 372, 594, 625, 650
Bme1390I CCNGG 5 cut(s) 193, 357, 726, 749, 921
Bme18I GGWCC 3 cut(s) 93, 353, 461
BmgT120I GGNCC 4 cut(s) 93, 353, 359, 461
BmiI GGNNCC 3 cut(s) 95, 355, 839
BmrFI CCNGG 5 cut(s) 193, 357, 726, 749, 921
BmsI GCATC 6 cut(s) 280, 635, 700, 742, 778, 955
BpmI CTGGAG 1 cut(s) 162
Bpu10I CCTNAGC 1 cut(s) 784
BpuMI CCSGG 2 cut(s) 193, 357
BsaBI GATNNNNATC 2 cut(s) 219, 672
BsaJI CCNNGG 1 cut(s) 177
BsaXI ACNNNNNCTCC 6 cut(s) 25, 55, 135, 165, 420, 450
Bsc4I CCNNNNNNNGG 3 cut(s) 320, 350, 692
Bse1I ACTGG 2 cut(s) 114, 401
Bse8I GATNNNNATC 2 cut(s) 219, 672
BseBI CCWGG 3 cut(s) 726, 749, 921
BseDI CCNNGG 1 cut(s) 177
BseGI GGATG 3 cut(s) 239, 715, 757
BseJI GATNNNNATC 2 cut(s) 219, 672
BseLI CCNNNNNNNGG 3 cut(s) 320, 350, 692
BseNI ACTGG 2 cut(s) 114, 401
BseRI GAGGAG 1 cut(s) 339
BseXI GCAGC 4 cut(s) 379, 382, 579, 635
BsgI GTGCAG 1 cut(s) 600
Bsh1236I CGCG 1 cut(s) 590
BshFI GGCC 3 cut(s) 113, 360, 648
BsiSI CCGG 2 cut(s) 192, 357
BslFI GGGAC 1 cut(s) 79
BslI CCNNNNNNNGG 3 cut(s) 320, 350, 692
BsmFI GGGAC 1 cut(s) 79
BsnI GGCC 3 cut(s) 113, 360, 648
Bsp1407I TGTACA 1 cut(s) 504
Bsp143I GATC 4 cut(s) 402, 430, 667, 673
BspACI CCGC 3 cut(s) 588, 649, 713
BspANI GGCC 3 cut(s) 113, 360, 648
BspCNI CTCAG 1 cut(s) 963
BspFNI CGCG 1 cut(s) 590
BspLI GGNNCC 3 cut(s) 95, 355, 839
BspPI GGATC 3 cut(s) 425, 662, 668
BsrGI TGTACA 1 cut(s) 504
BsrI ACTGG 2 cut(s) 114, 401
BssECI CCNNGG 1 cut(s) 177
BssMI GATC 4 cut(s) 402, 430, 667, 673
BssNAI GTATAC 1 cut(s) 745
BssT1I CCWWGG 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 745
Bst2UI CCWGG 3 cut(s) 726, 749, 921
Bst4CI ACNGT 2 cut(s) 348, 470
BstAUI TGTACA 1 cut(s) 504
BstC8I GCNNGC 2 cut(s) 569, 862
BstDEI CTNAG 2 cut(s) 784, 950
BstF5I GGATG 3 cut(s) 239, 715, 757
BstFNI CGCG 1 cut(s) 590
BstHHI GCGC 1 cut(s) 592
BstKTI GATC 4 cut(s) 405, 433, 670, 676
BstMBI GATC 4 cut(s) 402, 430, 667, 673
BstMWI GCNNNNNNNGC 1 cut(s) 623
BstNI CCWGG 3 cut(s) 726, 749, 921
BstSCI CCNGG 5 cut(s) 191, 355, 724, 747, 919
BstUI CGCG 1 cut(s) 590
BstV1I GCAGC 4 cut(s) 379, 382, 579, 635
BstX2I RGATCY 2 cut(s) 430, 667
BstYI RGATCY 2 cut(s) 430, 667
BstZ17I GTATAC 1 cut(s) 745
BsuRI GGCC 3 cut(s) 113, 360, 648
BtgZI GCGATG 1 cut(s) 20
BtsCI GGATG 3 cut(s) 239, 715, 757
BtsI GCAGTG 1 cut(s) 211
BtsIMutI CAGTG 3 cut(s) 211, 325, 613
Cac8I GCNNGC 2 cut(s) 569, 862
CfoI GCGC 1 cut(s) 592
Cfr13I GGNCC 4 cut(s) 93, 353, 359, 461
CseI GACGC 1 cut(s) 833
Csp6I GTAC 3 cut(s) 254, 505, 585
CspCI CAANNNNNGTGG 2 cut(s) 526, 561
CviAII CATG 2 cut(s) 374, 478
CviQI GTAC 3 cut(s) 254, 505, 585
DdeI CTNAG 2 cut(s) 784, 950
DpnI GATC 4 cut(s) 404, 432, 669, 675
DpnII GATC 4 cut(s) 402, 430, 667, 673
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 177
Eco47I GGWCC 3 cut(s) 93, 353, 461
Eco57I CTGAAG 1 cut(s) 589
EcoO109I RGGNCCY 1 cut(s) 93
EcoRII CCWGG 3 cut(s) 724, 747, 919
EcoT14I CCWWGG 1 cut(s) 177
ErhI CCWWGG 1 cut(s) 177
FaeI CATG 2 cut(s) 377, 481
FalI AAGNNNNNCTT 2 cut(s) 258, 290
FaqI GGGAC 1 cut(s) 79
FatI CATG 2 cut(s) 373, 477
FblI GTMKAC 1 cut(s) 744
Fnu4HI GCNGC 5 cut(s) 368, 371, 593, 624, 649
FokI GGATG 3 cut(s) 246, 722, 764
Fsp4HI GCNGC 5 cut(s) 368, 371, 593, 624, 649
FspBI CTAG 1 cut(s) 914
GlaI GCGC 1 cut(s) 591
GluI GCNGC 5 cut(s) 368, 371, 593, 624, 649
GsuI CTGGAG 1 cut(s) 162
HaeIII GGCC 3 cut(s) 113, 360, 648
HapII CCGG 2 cut(s) 192, 357
HgaI GACGC 1 cut(s) 833
HhaI GCGC 1 cut(s) 592
Hin1II CATG 2 cut(s) 377, 481
Hin6I GCGC 1 cut(s) 590
HinP1I GCGC 1 cut(s) 590
HindIII AAGCTT 2 cut(s) 169, 498
HinfI GANTC 3 cut(s) 60, 410, 682
HpaII CCGG 2 cut(s) 192, 357
HphI GGTGA 1 cut(s) 800
Hpy166II GTNNAC 1 cut(s) 745
Hpy188I TCNGA 4 cut(s) 284, 415, 823, 849
Hpy188III TCNNGA 5 cut(s) 141, 392, 671, 773, 805
Hpy8I GTNNAC 1 cut(s) 745
HpyAV CCTTC 3 cut(s) 142, 152, 158
HpyCH4III ACNGT 2 cut(s) 348, 470
HpyCH4V TGCA 9 cut(s) 19, 367, 383, 424, 520, 595, 617, 769, 893
HpyF10VI GCNNNNNNNGC 1 cut(s) 623
HpyF3I CTNAG 2 cut(s) 784, 950
Hsp92II CATG 2 cut(s) 377, 481
HspAI GCGC 1 cut(s) 590
Kzo9I GATC 4 cut(s) 402, 430, 667, 673
Lsp1109I GCAGC 4 cut(s) 379, 382, 579, 635
LweI GCATC 6 cut(s) 280, 635, 700, 742, 778, 955
MaeI CTAG 1 cut(s) 914
MaeIII GTNAC 4 cut(s) 151, 238, 715, 923
MalI GATC 4 cut(s) 404, 432, 669, 675
MboI GATC 4 cut(s) 402, 430, 667, 673
MboII GAAGA 2 cut(s) 319, 713
MflI RGATCY 2 cut(s) 430, 667
MlsI TGGCCA 1 cut(s) 113
MluCI AATT 1 cut(s) 814
MluNI TGGCCA 1 cut(s) 113
MlyI GAGTC 1 cut(s) 54
MmeI TCCRAC 1 cut(s) 801
MnlI CCTC 5 cut(s) 47, 202, 281, 317, 685
Mox20I TGGCCA 1 cut(s) 113
MscI TGGCCA 1 cut(s) 113
MseI TTAA 3 cut(s) 440, 552, 633
Msp20I TGGCCA 1 cut(s) 113
MspI CCGG 2 cut(s) 192, 357
MspR9I CCNGG 5 cut(s) 193, 357, 726, 749, 921
MvaI CCWGG 3 cut(s) 726, 749, 921
MvnI CGCG 1 cut(s) 590
MwoI GCNNNNNNNGC 1 cut(s) 623
NciI CCSGG 2 cut(s) 193, 357
NdeII GATC 4 cut(s) 402, 430, 667, 673
NlaIII CATG 2 cut(s) 377, 481
NlaIV GGNNCC 3 cut(s) 95, 355, 839
NmuCI GTSAC 1 cut(s) 715
PcsI WCGNNNNNNNCGW 1 cut(s) 857
PfeI GAWTC 2 cut(s) 410, 682
PflFI GACNNNGTC 1 cut(s) 193
PflMI CCANNNNNTGG 2 cut(s) 320, 350
PfoI TCCNGGA 1 cut(s) 724
PkrI GCNGC 5 cut(s) 369, 372, 594, 625, 650
PleI GAGTC 1 cut(s) 54
PpsI GAGTC 1 cut(s) 54
PpuMI RGGWCCY 1 cut(s) 93
Psp5II RGGWCCY 1 cut(s) 93
Psp6I CCWGG 3 cut(s) 724, 747, 919
PspGI CCWGG 3 cut(s) 724, 747, 919
PspN4I GGNNCC 3 cut(s) 95, 355, 839
PspPI GGNCC 4 cut(s) 93, 353, 359, 461
PspPPI RGGWCCY 1 cut(s) 93
PsuI RGATCY 2 cut(s) 430, 667
PsyI GACNNNGTC 1 cut(s) 193
RsaI GTAC 3 cut(s) 255, 506, 586
RsaNI GTAC 3 cut(s) 254, 505, 585
SaqAI TTAA 3 cut(s) 440, 552, 633
SatI GCNGC 5 cut(s) 368, 371, 593, 624, 649
Sau3AI GATC 4 cut(s) 402, 430, 667, 673
Sau96I GGNCC 4 cut(s) 93, 353, 359, 461
SchI GAGTC 1 cut(s) 54
ScrFI CCNGG 5 cut(s) 193, 357, 726, 749, 921
SfaNI GCATC 6 cut(s) 280, 635, 700, 742, 778, 955
SinI GGWCC 3 cut(s) 93, 353, 461
Sse9I AATT 1 cut(s) 814
SsiI CCGC 3 cut(s) 588, 649, 713
SspMI CTAG 1 cut(s) 914
StyD4I CCNGG 5 cut(s) 191, 355, 724, 747, 919
StyI CCWWGG 1 cut(s) 177
TaaI ACNGT 2 cut(s) 348, 470
TaqI TCGA 1 cut(s) 774
TasI AATT 1 cut(s) 814
TatI WGTACW 1 cut(s) 504
TauI GCSGC 1 cut(s) 651
TfiI GAWTC 2 cut(s) 410, 682
Tru1I TTAA 3 cut(s) 440, 552, 633
Tru9I TTAA 3 cut(s) 440, 552, 633
TscAI CASTG 3 cut(s) 211, 325, 613
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 4 cut(s) 367, 370, 592, 623
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 2 cut(s) 108, 567
TspRI CASTG 3 cut(s) 211, 325, 613
Tth111I GACNNNGTC 1 cut(s) 193
Van91I CCANNNNNTGG 2 cut(s) 320, 350
VpaK11BI GGWCC 3 cut(s) 93, 353, 461
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 744
XspI CTAG 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.