Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006438.1

Orthogroup ID

OG0002831

Physical Location & Seq

Genomic Coordinates Reverse (-)

69489 .. 70586

Gene Structure 1098 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

atgttctatgctatccagccaatagttcgggaaaagccgtctctcaaatgcataagtacttgtctaaatctactgattgaagcgaatcaggttgatttggcccaacagtttctcatgcatttgaagaagagtcttaacttgaagctgaatacatgcattgtcaacatcttggttaagcaccattgcaaaaatggggatcttgaatctgcctttgaggttgtaaaggaaatgaaaaagtctaagctttcctatcctaatttgattacttactcgactctaattgatggcttatgtcagagtggaagactgacagaagcaatggacctgtttgaggaaatgatctcaaaggatcagatattgcctgatgtgctaacatacaacattttgattaacggtttttgccatggtgggaaagttgatagggcaaggaagatattggattttatgaagagcaaaggatgcaacccaaatgtattcaattactcagctctgatgaatggattctgtaaggaggaaaggttggaagaggccaaggagcttttggatgaaatgaagagctttggtatcaaaccagatacagttgtctacactactttaattgattgctactttaggactgggagagttgatgaagcgatagagttgctcaaagagatgaaagaaaaacggtgcaaagctgatactgtgactttcaatgtgatacttggaggactatgtagagaaggtagaattgaggatgcgcttgagatgctggacaaacttccttatgagggtatctatctgaataagggaagctacaggattgtgttgaattcattgtgtcagaaaggcgaactaaacaaagctaaagaattgttgagattgatgatgggtagggggtttgtaccacattatgcaacttcaaacgagttgctagttagcctcacaaaggctggaatggcagatgatgcaactatggttttatttggattggtggagttgggtttcaaaccactgcctgattcctgggctctttttgttgaatcaatttgcagagaaagaaagctgctgccagcatttgaactgctcgatgaattagttaatgaagagtttgattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

365

Amino Acids

41.51

Weight (kDa)

5.76

Isoelectric Point (pI)

26.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_long	PF17177	44 - 117	8.4e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	44 - 95	6.5e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	46 - 78	4.2e-07	PPR repeat
PPR_2	PF13041	50 - 99	3.3e-14	PPR repeat family
PPR_2	PF13041	85 - 135	1.6e-17	PPR repeat family
PPR_1	PF12854	85 - 113	2.4e-13	PPR repeat
PPR	PF01535	88 - 116	1.4e-09	PPR repeat
PPR_long	PF17177	99 - 254	6e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	110 - 168	1.9e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	119 - 150	7.2e-12	PPR repeat
PPR_2	PF13041	121 - 170	2.4e-17	PPR repeat family
PPR	PF01535	125 - 154	3e-08	PPR repeat
PPR_1	PF12854	152 - 185	5e-13	PPR repeat
PPR_2	PF13041	156 - 201	1.5e-14	PPR repeat family
TPR_24	PF23276	160 - 250	1.8e-08	Fungal tetratrico peptide repeats
PPR	PF01535	161 - 189	2.1e-08	PPR repeat
PPR_long	PF17177	174 - 286	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	180 - 236	4.4e-14	Pentatricopeptide repeat domain
PPR_1	PF12854	188 - 220	4.1e-13	PPR repeat
PPR_2	PF13041	191 - 240	2.2e-18	PPR repeat family
PPR	PF01535	194 - 224	4.4e-10	PPR repeat
PPR_1	PF12854	222 - 253	5e-10	PPR repeat
PPR_2	PF13041	227 - 275	3e-11	PPR repeat family
PPR	PF01535	229 - 259	9.6e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G18475
fragaria_vesca	FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730 FvH4_5g35730
prunus_persica	Prupe.1G528200_v2.0.a1
pyrus_communis	pycom08g16680
rosa_chinensis	RchiOBHm_Chr4g0424581 RchiOBHm_Chr7g0237351
rosa_laevigata	RLG00000001010 RLG00000007454
rosa_multiflora	Rmu_co8091050.1_g000001 Rmu_sc0000281.1_g000013 Rmu_sc0000820.1_g000045 Rmu_sc0002603.1_g000021 Rmu_sc0002923.1_g000038 Rmu_sc0006438.1_g000010
rosa_roxburghii	Rroxscaffold_3G00224290 Rroxscaffold_3G00224300 Rroxscaffold_5G00366500
rosa_rugosa	Rorug04G0198000 Rorug07G0302800 Rorug07G0302800
rosa_samantha	Rh1CG247200 Rh1DG083900 Rh4AG254700 Rh4BG260200 Rh4CG271700 Rh4DG254900 Rh5AG212800 Rh6DG464200 Rh7AG460000 Rh7BG429900 Rh7CG477300 Rh7DG446600
rosa_wichuraiana	Rw1G023340 Rw4G022020 Rw7G038100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	585
AclWI	GGATC	2 cut(s)	204, 357
AcsI	RAATTY	1 cut(s)	811
AfaI	GTAC	2 cut(s)	58, 885
AfiI	CCNNNNNNNGG	3 cut(s)	331, 770, 928
AjnI	CCWGG	1 cut(s)	1004
AluBI	AGCT	9 cut(s)	145, 244, 488, 538, 558, 677, 795, 845, 1045
AluI	AGCT	9 cut(s)	145, 244, 488, 538, 558, 677, 795, 845, 1045
Alw26I	GTCTC	1 cut(s)	45
AlwI	GGATC	2 cut(s)	204, 357
AoxI	GGCC	2 cut(s)	99, 528
ApeKI	GCWGC	2 cut(s)	1045, 1048
ApoI	RAATTY	1 cut(s)	811
Asp700I	GAANNNNTTC	1 cut(s)	500
AspLEI	GCGC	1 cut(s)	742
AspS9I	GGNCC	2 cut(s)	100, 322
AvaII	GGWCC	1 cut(s)	322
BaeI	ACNNNNGTAYC	2 cut(s)	567, 600
BanII	GRGCYC	1 cut(s)	1012
BbsI	GAAGAC	1 cut(s)	310
BbvI	GCAGC	2 cut(s)	1032, 1035
BccI	CCATC	2 cut(s)	278, 862
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	625, 659
BciT130I	CCWGG	1 cut(s)	1006
BcoDI	GTCTC	1 cut(s)	45
BfaI	CTAG	1 cut(s)	914
BfmI	CTRYAG	1 cut(s)	796
BisI	GCNGC	2 cut(s)	1046, 1049
BlsI	GCNGC	2 cut(s)	1047, 1050
BmcAI	AGTACT	1 cut(s)	58
Bme1390I	CCNGG	1 cut(s)	1006
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	2 cut(s)	100, 322
BmrFI	CCNGG	1 cut(s)	1006
BmrI	ACTGGG	1 cut(s)	627
BmsI	GCATC	4 cut(s)	449, 727, 738, 937
BmuI	ACTGGG	1 cut(s)	627
BpiI	GAAGAC	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	764
BsaJI	CCNNGG	3 cut(s)	403, 531, 1005
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	3 cut(s)	331, 770, 928
Bse1I	ACTGG	1 cut(s)	622
Bse3DI	GCAATG	2 cut(s)	181, 324
BseBI	CCWGG	1 cut(s)	1006
BseDI	CCNNGG	3 cut(s)	403, 531, 1005
BseGI	GGATG	3 cut(s)	464, 550, 742
BseLI	CCNNNNNNNGG	3 cut(s)	331, 770, 928
BseMI	GCAATG	2 cut(s)	181, 324
BseMII	CTCAG	1 cut(s)	498
BseNI	ACTGG	1 cut(s)	622
BseXI	GCAGC	2 cut(s)	1032, 1035
BshFI	GGCC	2 cut(s)	101, 530
BslI	CCNNNNNNNGG	3 cut(s)	331, 770, 928
BsmAI	GTCTC	1 cut(s)	45
BsmBI	CGTCTC	1 cut(s)	45
BsnI	GGCC	2 cut(s)	101, 530
Bsp1286I	GDGCHC	1 cut(s)	1012
Bsp143I	GATC	3 cut(s)	196, 339, 349
Bsp19I	CCATGG	1 cut(s)	403
BspANI	GGCC	2 cut(s)	101, 530
BspCNI	CTCAG	1 cut(s)	497
BspPI	GGATC	2 cut(s)	204, 357
BspQI	GCTCTTC	2 cut(s)	443, 548
BsrDI	GCAATG	2 cut(s)	181, 324
BsrI	ACTGG	1 cut(s)	622
BssECI	CCNNGG	3 cut(s)	403, 531, 1005
BssMI	GATC	3 cut(s)	196, 339, 349
BssT1I	CCWWGG	2 cut(s)	403, 531
Bst2UI	CCWGG	1 cut(s)	1006
Bst4CI	ACNGT	5 cut(s)	108, 395, 580, 669, 685
Bst6I	CTCTTC	5 cut(s)	122, 443, 519, 548, 1080
BstAPI	GCANNNNNTGC	2 cut(s)	459, 947
BstC8I	GCNNGC	1 cut(s)	1053
BstDEI	CTNAG	2 cut(s)	240, 484
BstDSI	CCRYGG	1 cut(s)	403
BstENI	CCTNNNNNAGG	2 cut(s)	329, 926
BstF5I	GGATG	3 cut(s)	464, 550, 742
BstHHI	GCGC	1 cut(s)	742
BstKTI	GATC	3 cut(s)	199, 342, 352
BstMAI	GTCTC	1 cut(s)	45
BstMBI	GATC	3 cut(s)	196, 339, 349
BstMWI	GCNNNNNNNGC	5 cut(s)	367, 459, 748, 938, 947
BstNI	CCWGG	1 cut(s)	1006
BstNSI	RCATGY	1 cut(s)	156
BstSCI	CCNGG	1 cut(s)	1004
BstSFI	CTRYAG	1 cut(s)	796
BstV1I	GCAGC	2 cut(s)	1032, 1035
BstV2I	GAAGAC	1 cut(s)	310
BstX2I	RGATCY	1 cut(s)	196
BstYI	RGATCY	1 cut(s)	196
BsuRI	GGCC	2 cut(s)	101, 530
BtgI	CCRYGG	1 cut(s)	403
BtsCI	GGATG	3 cut(s)	464, 550, 742
BtsI	GCAGTG	1 cut(s)	992
BtsIMutI	CAGTG	1 cut(s)	992
Cac8I	GCNNGC	1 cut(s)	1053
CfoI	GCGC	1 cut(s)	742
Cfr13I	GGNCC	2 cut(s)	100, 322
Csp6I	GTAC	2 cut(s)	57, 884
CviAII	CATG	3 cut(s)	115, 153, 404
CviQI	GTAC	2 cut(s)	57, 884
DdeI	CTNAG	2 cut(s)	240, 484
DpnI	GATC	3 cut(s)	198, 341, 351
DpnII	GATC	3 cut(s)	196, 339, 349
Eam1104I	CTCTTC	5 cut(s)	122, 443, 519, 548, 1080
EarI	CTCTTC	5 cut(s)	122, 443, 519, 548, 1080
Eco130I	CCWWGG	2 cut(s)	403, 531
Eco24I	GRGCYC	1 cut(s)	1012
Eco47I	GGWCC	1 cut(s)	322
EcoNI	CCTNNNNNAGG	2 cut(s)	329, 926
EcoRI	GAATTC	1 cut(s)	811
EcoRII	CCWGG	1 cut(s)	1004
EcoT14I	CCWWGG	2 cut(s)	403, 531
EcoT22I	ATGCAT	3 cut(s)	53, 120, 158
EcoT38I	GRGCYC	1 cut(s)	1012
ErhI	CCWWGG	2 cut(s)	403, 531
Esp3I	CGTCTC	1 cut(s)	45
FaeI	CATG	3 cut(s)	118, 156, 407
FatI	CATG	3 cut(s)	114, 152, 403
FblI	GTMKAC	1 cut(s)	585
Fnu4HI	GCNGC	2 cut(s)	1046, 1049
FokI	GGATG	3 cut(s)	471, 557, 749
FriOI	GRGCYC	1 cut(s)	1012
Fsp4HI	GCNGC	2 cut(s)	1046, 1049
FspBI	CTAG	1 cut(s)	914
GlaI	GCGC	1 cut(s)	741
GluI	GCNGC	2 cut(s)	1046, 1049
HaeIII	GGCC	2 cut(s)	101, 530
HhaI	GCGC	1 cut(s)	742
Hin1II	CATG	3 cut(s)	118, 156, 407
Hin6I	GCGC	1 cut(s)	740
HinP1I	GCGC	1 cut(s)	740
HincII	GTYRAC	1 cut(s)	163
HindII	GTYRAC	1 cut(s)	163
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	7 cut(s)	85, 130, 203, 274, 501, 1001, 1022
Hpy166II	GTNNAC	2 cut(s)	163, 586
Hpy188I	TCNGA	5 cut(s)	297, 354, 492, 783, 825
Hpy188III	TCNNGA	2 cut(s)	29, 200
Hpy8I	GTNNAC	2 cut(s)	163, 586
HpyAV	CCTTC	1 cut(s)	716
HpyCH4III	ACNGT	5 cut(s)	108, 395, 580, 669, 685
HpyCH4V	TGCA	9 cut(s)	51, 118, 156, 186, 462, 672, 896, 950, 1032
HpyF10VI	GCNNNNNNNGC	5 cut(s)	367, 459, 748, 938, 947
HpyF3I	CTNAG	2 cut(s)	240, 484
Hsp92II	CATG	3 cut(s)	118, 156, 407
HspAI	GCGC	1 cut(s)	740
Kzo9I	GATC	3 cut(s)	196, 339, 349
LguI	GCTCTTC	2 cut(s)	443, 548
LmnI	GCTCC	1 cut(s)	535
Lsp1109I	GCAGC	2 cut(s)	1032, 1035
LweI	GCATC	4 cut(s)	449, 727, 738, 937
MaeI	CTAG	1 cut(s)	914
MaeIII	GTNAC	1 cut(s)	685
MalI	GATC	3 cut(s)	198, 341, 351
MboI	GATC	3 cut(s)	196, 339, 349
MboII	GAAGA	8 cut(s)	136, 139, 315, 442, 460, 536, 565, 1097
MflI	RGATCY	1 cut(s)	196
MhlI	GDGCHC	1 cut(s)	1012
MluCI	AATT	9 cut(s)	256, 279, 478, 597, 729, 811, 851, 1026, 1073
MlyI	GAGTC	2 cut(s)	139, 268
MmeI	TCCRAC	1 cut(s)	501
MnlI	CCTC	8 cut(s)	208, 325, 505, 520, 701, 727, 763, 932
Mph1103I	ATGCAT	3 cut(s)	53, 120, 158
MroXI	GAANNNNTTC	1 cut(s)	500
MseI	TTAA	6 cut(s)	135, 174, 390, 596, 1080, 1096
MspR9I	CCNGG	1 cut(s)	1006
MvaI	CCWGG	1 cut(s)	1006
MwoI	GCNNNNNNNGC	5 cut(s)	367, 459, 748, 938, 947
NcoI	CCATGG	1 cut(s)	403
NdeII	GATC	3 cut(s)	196, 339, 349
NlaIII	CATG	3 cut(s)	118, 156, 407
NmuCI	GTSAC	1 cut(s)	685
NsiI	ATGCAT	3 cut(s)	53, 120, 158
NspI	RCATGY	1 cut(s)	156
PciSI	GCTCTTC	2 cut(s)	443, 548
PdmI	GAANNNNTTC	1 cut(s)	500
PfeI	GAWTC	5 cut(s)	85, 203, 501, 1001, 1022
PkrI	GCNGC	2 cut(s)	1047, 1050
PleI	GAGTC	2 cut(s)	138, 268
PpsI	GAGTC	2 cut(s)	138, 268
Psp6I	CCWGG	1 cut(s)	1004
PspGI	CCWGG	1 cut(s)	1004
PspPI	GGNCC	2 cut(s)	100, 322
PsuI	RGATCY	1 cut(s)	196
RsaI	GTAC	2 cut(s)	58, 885
RsaNI	GTAC	2 cut(s)	57, 884
SapI	GCTCTTC	2 cut(s)	443, 548
SaqAI	TTAA	6 cut(s)	135, 174, 390, 596, 1080, 1096
SatI	GCNGC	2 cut(s)	1046, 1049
Sau3AI	GATC	3 cut(s)	196, 339, 349
Sau96I	GGNCC	2 cut(s)	100, 322
ScaI	AGTACT	1 cut(s)	58
SchI	GAGTC	2 cut(s)	139, 268
ScrFI	CCNGG	1 cut(s)	1006
SduI	GDGCHC	1 cut(s)	1012
SfaNI	GCATC	4 cut(s)	449, 727, 738, 937
SfcI	CTRYAG	1 cut(s)	796
SinI	GGWCC	1 cut(s)	322
SmlI	CTYRAG	1 cut(s)	743
SmoI	CTYRAG	1 cut(s)	743
Sse9I	AATT	9 cut(s)	256, 279, 478, 597, 729, 811, 851, 1026, 1073
SspMI	CTAG	1 cut(s)	914
StyD4I	CCNGG	1 cut(s)	1004
StyI	CCWWGG	2 cut(s)	403, 531
TaaI	ACNGT	5 cut(s)	108, 395, 580, 669, 685
TaqI	TCGA	2 cut(s)	272, 1068
TasI	AATT	9 cut(s)	256, 279, 478, 597, 729, 811, 851, 1026, 1073
TatI	WGTACW	1 cut(s)	56
TfiI	GAWTC	5 cut(s)	85, 203, 501, 1001, 1022
Tru1I	TTAA	6 cut(s)	135, 174, 390, 596, 1080, 1096
Tru9I	TTAA	6 cut(s)	135, 174, 390, 596, 1080, 1096
TscAI	CASTG	1 cut(s)	999
TseFI	GTSAC	1 cut(s)	685
TseI	GCWGC	2 cut(s)	1045, 1048
Tsp45I	GTSAC	1 cut(s)	685
TspRI	CASTG	1 cut(s)	999
VpaK11BI	GGWCC	1 cut(s)	322
XagI	CCTNNNNNAGG	2 cut(s)	329, 926
XapI	RAATTY	1 cut(s)	811
XceI	RCATGY	1 cut(s)	156
XcmI	CCANNNNNNNNNTGG	2 cut(s)	188, 538
XmiI	GTMKAC	1 cut(s)	585
XmnI	GAANNNNTTC	1 cut(s)	500
XspI	CTAG	1 cut(s)	914
ZrmI	AGTACT	1 cut(s)	58
Zsp2I	ATGCAT	3 cut(s)	53, 120, 158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.