Rmu_sc0006510.1_g000006

Interconversion of serine and glycine

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006510.1
OG0001957
Physical Location & Seq
Reverse (-)
22288 .. 24387
2100 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 798 bp
atggcacacatcagtggattggttgcggcaggtgttttttcatttccttttgagtatgcagatattgttacaaccacaactcacaagtcacttcgtggccctcgtggggctatgatcttcttcaggaagggggtcaaaaatgtaaacaagcaagggcaagaagttatgtatgactatgaagacaaaattaatcaggctgtctttcctggactccaaggtggtccacacaatcacaccatatctgggttagcagttgcactcaagcaggccacaactccagagttcaaagcttaccaagagcaagttctcagtaactccgcaaaatttgcagagagcttgctagagaagggctatgatcttgtctctggtggaactgacaaccatttagtgttggtaaatttgagggacaagggaattgatggctcaagagttgaaaaggttctggaagctgctcatattgcagcaaataaaaatactgtcccaggggatgtttctgccatggtccctggtggtatacgtatgggaaccccggctctcacatctaggggttttatggaggatgattttgaaaaagtagcagagtattttgatgcagccgtgaagatagccttgaagattaaggctgctacaaaaggtaccaagttaaaggattttgtggcaactctggaatcagatggtcaaatacaatctgagattgcaaagctacgccacgagaatgaagagcgaacccctgtcattgttacagataaatttgttgaacaggcaacaagtgtgcttgcaaatgactccaatgcctaa

Protein Analysis

265

Amino Acids

28.67

Weight (kDa)

6.18

Isoelectric Point (pI)

32.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
SHMT PF00464 1 - 195 1.8e-100 Serine hydroxymethyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 20
Acc65I GGTACC 1 cut(s) 635
AccB1I GGYRCC 1 cut(s) 635
AccI GTMKAC 1 cut(s) 514
AciI CCGC 2 cut(s) 26, 318
AcsI RAATTY 3 cut(s) 323, 397, 749
AcuI CTGAAG 1 cut(s) 106
AdeI CACNNNGTG 1 cut(s) 95
AfaI GTAC 1 cut(s) 637
AfiI CCNNNNNNNGG 2 cut(s) 106, 243
AgsI TTSAA 5 cut(s) 286, 434, 569, 613, 758
AjnI CCWGG 3 cut(s) 205, 481, 505
AjuI GAANNNNNNNTTGG 2 cut(s) 288, 320
AleI CACNNNNGTG 1 cut(s) 12
AluBI AGCT 4 cut(s) 290, 336, 449, 703
AluI AGCT 4 cut(s) 290, 336, 449, 703
Alw26I GTCTC 1 cut(s) 367
AoxI GGCC 2 cut(s) 97, 267
ApeKI GCWGC 4 cut(s) 449, 461, 593, 623
ApoI RAATTY 3 cut(s) 323, 397, 749
AseI ATTAAT 1 cut(s) 189
Asp700I GAANNNNTTC 1 cut(s) 438
Asp718I GGTACC 1 cut(s) 635
AspS9I GGNCC 3 cut(s) 98, 221, 502
AsuC2I CCSGG 1 cut(s) 530
AvaII GGWCC 2 cut(s) 221, 502
BanI GGYRCC 1 cut(s) 635
BauI CACGAG 2 cut(s) 102, 710
BbsI GAAGAC 1 cut(s) 186
BbvI GCAGC 4 cut(s) 436, 473, 605, 610
BccI CCATC 2 cut(s) 413, 668
BceAI ACGGC 1 cut(s) 581
BciT130I CCWGG 3 cut(s) 207, 483, 507
BcnI CCSGG 1 cut(s) 530
BcoDI GTCTC 1 cut(s) 367
BfaI CTAG 2 cut(s) 341, 543
BfuAI ACCTGC 1 cut(s) 20
BisI GCNGC 5 cut(s) 27, 450, 462, 594, 624
BlsI GCNGC 5 cut(s) 28, 451, 463, 595, 625
Bme1390I CCNGG 4 cut(s) 207, 483, 507, 530
Bme18I GGWCC 2 cut(s) 221, 502
BmgT120I GGNCC 3 cut(s) 98, 221, 502
BmiI GGNNCC 3 cut(s) 504, 526, 637
BmrFI CCNGG 4 cut(s) 207, 483, 507, 530
BmsI GCATC 1 cut(s) 580
BpiI GAAGAC 1 cut(s) 186
BpmI CTGGAG 1 cut(s) 261
BpuEI CTTGAG 2 cut(s) 245, 409
BpuMI CCSGG 1 cut(s) 530
BsaAI YACGTR 1 cut(s) 518
BsaJI CCNNGG 6 cut(s) 214, 481, 482, 498, 505, 528
Bsc4I CCNNNNNNNGG 2 cut(s) 106, 243
BseBI CCWGG 3 cut(s) 207, 483, 507
BseDI CCNNGG 6 cut(s) 214, 481, 482, 498, 505, 528
BseGI GGATG 2 cut(s) 493, 565
BseLI CCNNNNNNNGG 2 cut(s) 106, 243
BseMII CTCAG 2 cut(s) 322, 681
BseXI GCAGC 4 cut(s) 436, 473, 605, 610
BshFI GGCC 2 cut(s) 99, 269
BshNI GGYRCC 1 cut(s) 635
BsiSI CCGG 1 cut(s) 530
BslFI GGGAC 3 cut(s) 419, 464, 488
BslI CCNNNNNNNGG 2 cut(s) 106, 243
BsmAI GTCTC 1 cut(s) 367
BsmFI GGGAC 3 cut(s) 419, 464, 488
BsnI GGCC 2 cut(s) 99, 269
Bsp143I GATC 2 cut(s) 114, 355
Bsp19I CCATGG 1 cut(s) 498
BspACI CCGC 2 cut(s) 26, 318
BspANI GGCC 2 cut(s) 99, 269
BspCNI CTCAG 2 cut(s) 321, 682
BspLI GGNNCC 3 cut(s) 504, 526, 637
BspMI ACCTGC 1 cut(s) 20
BspQI GCTCTTC 1 cut(s) 714
BspT107I GGYRCC 1 cut(s) 635
BssECI CCNNGG 6 cut(s) 214, 481, 482, 498, 505, 528
BssMI GATC 2 cut(s) 114, 355
BssNAI GTATAC 1 cut(s) 515
BssSI CACGAG 2 cut(s) 102, 710
BssT1I CCWWGG 2 cut(s) 214, 498
Bst1107I GTATAC 1 cut(s) 515
Bst2BI CACGAG 2 cut(s) 102, 710
Bst2UI CCWGG 3 cut(s) 207, 483, 507
Bst4CI ACNGT 1 cut(s) 478
Bst6I CTCTTC 1 cut(s) 714
BstAPI GCANNNNNTGC 1 cut(s) 326
BstBAI YACGTR 1 cut(s) 518
BstC8I GCNNGC 3 cut(s) 267, 338, 777
BstDEI CTNAG 2 cut(s) 308, 690
BstDSI CCRYGG 1 cut(s) 498
BstF5I GGATG 2 cut(s) 493, 565
BstKTI GATC 2 cut(s) 117, 358
BstMAI GTCTC 1 cut(s) 367
BstMBI GATC 2 cut(s) 114, 355
BstMWI GCNNNNNNNGC 2 cut(s) 326, 458
BstNI CCWGG 3 cut(s) 207, 483, 507
BstSCI CCNGG 4 cut(s) 205, 481, 505, 528
BstSNI TACGTA 1 cut(s) 518
BstV1I GCAGC 4 cut(s) 436, 473, 605, 610
BstV2I GAAGAC 1 cut(s) 186
BstZ17I GTATAC 1 cut(s) 515
BsuRI GGCC 2 cut(s) 99, 269
BtgI CCRYGG 1 cut(s) 498
BtsCI GGATG 2 cut(s) 493, 565
BtsIMutI CAGTG 1 cut(s) 19
BveI ACCTGC 1 cut(s) 20
Cac8I GCNNGC 3 cut(s) 267, 338, 777
Cfr13I GGNCC 3 cut(s) 98, 221, 502
Csp6I GTAC 1 cut(s) 636
CviAII CATG 1 cut(s) 499
CviQI GTAC 1 cut(s) 636
DdeI CTNAG 2 cut(s) 308, 690
DpnI GATC 2 cut(s) 116, 357
DpnII GATC 2 cut(s) 114, 355
DraIII CACNNNGTG 1 cut(s) 95
Eam1104I CTCTTC 1 cut(s) 714
EarI CTCTTC 1 cut(s) 714
Eco105I TACGTA 1 cut(s) 518
Eco130I CCWWGG 2 cut(s) 214, 498
Eco47I GGWCC 2 cut(s) 221, 502
Eco57I CTGAAG 1 cut(s) 106
EcoRII CCWGG 3 cut(s) 205, 481, 505
EcoT14I CCWWGG 2 cut(s) 214, 498
ErhI CCWWGG 2 cut(s) 214, 498
FaeI CATG 1 cut(s) 502
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 3 cut(s) 419, 464, 488
FatI CATG 1 cut(s) 498
FblI GTMKAC 1 cut(s) 514
Fnu4HI GCNGC 5 cut(s) 27, 450, 462, 594, 624
FokI GGATG 2 cut(s) 500, 572
Fsp4HI GCNGC 5 cut(s) 27, 450, 462, 594, 624
FspBI CTAG 2 cut(s) 341, 543
GluI GCNGC 5 cut(s) 27, 450, 462, 594, 624
GsuI CTGGAG 1 cut(s) 261
HaeIII GGCC 2 cut(s) 99, 269
HapII CCGG 1 cut(s) 530
Hin1II CATG 1 cut(s) 502
HindIII AAGCTT 1 cut(s) 288
HinfI GANTC 3 cut(s) 210, 668, 785
HpaII CCGG 1 cut(s) 530
Hpy166II GTNNAC 3 cut(s) 145, 224, 515
Hpy188I TCNGA 2 cut(s) 673, 691
Hpy188III TCNNGA 5 cut(s) 124, 278, 426, 443, 665
Hpy8I GTNNAC 3 cut(s) 145, 224, 515
HpyAV CCTTC 2 cut(s) 121, 340
HpyCH4III ACNGT 1 cut(s) 478
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 7 cut(s) 59, 257, 329, 461, 593, 698, 779
HpyF10VI GCNNNNNNNGC 2 cut(s) 326, 458
HpyF3I CTNAG 2 cut(s) 308, 690
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 1 cut(s) 502
KpnI GGTACC 1 cut(s) 639
Kzo9I GATC 2 cut(s) 114, 355
LguI GCTCTTC 1 cut(s) 714
Lsp1109I GCAGC 4 cut(s) 436, 473, 605, 610
LweI GCATC 1 cut(s) 580
MaeI CTAG 2 cut(s) 341, 543
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 4 cut(s) 67, 87, 311, 739
MalI GATC 2 cut(s) 116, 357
MboI GATC 2 cut(s) 114, 355
MboII GAAGA 6 cut(s) 109, 112, 191, 613, 625, 731
MluCI AATT 5 cut(s) 186, 323, 397, 414, 749
MlyI GAGTC 2 cut(s) 204, 779
MnlI CCTC 3 cut(s) 111, 396, 550
MroXI GAANNNNTTC 1 cut(s) 438
MseI TTAA 3 cut(s) 189, 618, 644
MslI CAYNNNNRTG 2 cut(s) 12, 714
MspI CCGG 1 cut(s) 530
MspR9I CCNGG 4 cut(s) 207, 483, 507, 530
MvaI CCWGG 3 cut(s) 207, 483, 507
MwoI GCNNNNNNNGC 2 cut(s) 326, 458
NciI CCSGG 1 cut(s) 530
NcoI CCATGG 1 cut(s) 498
NdeII GATC 2 cut(s) 114, 355
NlaIII CATG 1 cut(s) 502
NlaIV GGNNCC 3 cut(s) 504, 526, 637
NmuCI GTSAC 1 cut(s) 87
OliI CACNNNNGTG 1 cut(s) 12
PaqCI CACCTGC 1 cut(s) 20
PasI CCCWGGG 1 cut(s) 482
PciSI GCTCTTC 1 cut(s) 714
PcsI WCGNNNNNNNCGW 1 cut(s) 100
PdmI GAANNNNTTC 1 cut(s) 438
PfeI GAWTC 1 cut(s) 668
PfoI TCCNGGA 1 cut(s) 205
PkrI GCNGC 5 cut(s) 28, 451, 463, 595, 625
PleI GAGTC 2 cut(s) 204, 779
PpsI GAGTC 2 cut(s) 204, 779
Ppu21I YACGTR 1 cut(s) 518
PshBI ATTAAT 1 cut(s) 189
Psp6I CCWGG 3 cut(s) 205, 481, 505
PspGI CCWGG 3 cut(s) 205, 481, 505
PspN4I GGNNCC 3 cut(s) 504, 526, 637
PspPI GGNCC 3 cut(s) 98, 221, 502
RsaI GTAC 1 cut(s) 637
RsaNI GTAC 1 cut(s) 636
RseI CAYNNNNRTG 2 cut(s) 12, 714
SapI GCTCTTC 1 cut(s) 714
SaqAI TTAA 3 cut(s) 189, 618, 644
SatI GCNGC 5 cut(s) 27, 450, 462, 594, 624
Sau3AI GATC 2 cut(s) 114, 355
Sau96I GGNCC 3 cut(s) 98, 221, 502
SchI GAGTC 2 cut(s) 204, 779
ScrFI CCNGG 4 cut(s) 207, 483, 507, 530
SetI ASST 9 cut(s) 34, 220, 292, 338, 441, 451, 520, 637, 705
SfaNI GCATC 1 cut(s) 580
SinI GGWCC 2 cut(s) 221, 502
SmiMI CAYNNNNRTG 2 cut(s) 12, 714
SmlI CTYRAG 2 cut(s) 260, 424
SmoI CTYRAG 2 cut(s) 260, 424
SnaBI TACGTA 1 cut(s) 518
Sse9I AATT 5 cut(s) 186, 323, 397, 414, 749
SsiI CCGC 2 cut(s) 26, 318
SspMI CTAG 2 cut(s) 341, 543
StyD4I CCNGG 4 cut(s) 205, 481, 505, 528
StyI CCWWGG 2 cut(s) 214, 498
TaaI ACNGT 1 cut(s) 478
TaiI ACGT 1 cut(s) 520
TasI AATT 5 cut(s) 186, 323, 397, 414, 749
TauI GCSGC 1 cut(s) 29
TfiI GAWTC 1 cut(s) 668
Tru1I TTAA 3 cut(s) 189, 618, 644
Tru9I TTAA 3 cut(s) 189, 618, 644
TscAI CASTG 1 cut(s) 19
TseFI GTSAC 1 cut(s) 87
TseI GCWGC 4 cut(s) 449, 461, 593, 623
Tsp45I GTSAC 1 cut(s) 87
TspDTI ATGAA 3 cut(s) 30, 192, 732
TspRI CASTG 1 cut(s) 19
VpaK11BI GGWCC 2 cut(s) 221, 502
VspI ATTAAT 1 cut(s) 189
XapI RAATTY 3 cut(s) 323, 397, 749
XmiI GTMKAC 1 cut(s) 514
XmnI GAANNNNTTC 1 cut(s) 438
XspI CTAG 2 cut(s) 341, 543
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.