Rmu_sc0006577.1_g000005

ATP synthase subunit delta'

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006577.1
OG0003919
Physical Location & Seq
Reverse (-)
44748 .. 46646
1899 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 645 bp
atgttccggcaagcctcacgtctcttgggtcgagcctcttggctgcggccacgacccttctgcacagaggtcccagcagccactccatcagcggacccagcctttgtagaggcatggaagaaagtggcgcccaacatcgacccacccaggactccatcaacctacatggaccctcggcctcccatcccttcttccctcccttccaaaatgacagtcaatttcgtcctcccttattcttctgagctctctggcaaagaggtctctgccctaaatttgatatcttttcggttattgatccgcgtcgacatggtcatgataccagcaacaaccggacagatgggtgttttgcctggccatgtcgcaaccattgcggagctaaagcctggagtcttatcagtgcacgatgggactgatgtgaaaaagtattttatcagcagtggatttgcttttattcatgcaaattctgttgctgatataattgccgtggaagctgtgccaattgaccaaattgacgcaagcttggtacagaaggggcttgcagagttcactcagaagctcagttcagctacaaccgatttggagaaagctgaagcacaaataggcatcgatgttcatagtgctcttaactctgctgtcactggctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000275 GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005753 GO:0006139 GO:0006163 GO:0006164 GO:0006725 GO:0006753 GO:0006754 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006811 GO:0006812 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0008270 GO:0009058 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009167 GO:0009168 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009628 GO:0009651 GO:0009987 GO:0015672 GO:0015985 GO:0015986 GO:0016020 GO:0016469 GO:0017144 GO:0018130 GO:0019438 GO:0019637 GO:0019693 GO:0019866 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032991 GO:0033178 GO:0034220 GO:0034641 GO:0034654 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045259 GO:0045261 GO:0046034 GO:0046390 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0051179 GO:0051234 GO:0055085 GO:0055086 GO:0071704 GO:0072521 GO:0072522 GO:0090407 GO:0098655 GO:0098660 GO:0098662 GO:0098796 GO:0098798 GO:0098800 GO:1901135 GO:1901137 GO:1901293 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1902600
KEGG Pathways
Metabolic & Signaling
ko00190 ko01100 ko04714 ko05010 ko05012 ko05016 map00190 map01100 map04714 map05010 map05012 map05016
Pfam Domains
Protein Families
ATP-synt_DE_N

Protein Analysis

214

Amino Acids

22.92

Weight (kDa)

6.42

Isoelectric Point (pI)

34.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ATP-synt_DE_N PF02823 100 - 156 5.9e-14 ATP synthase, Delta/Epsilon chain, beta-sandwich domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 300
AciI CCGC 4 cut(s) 46, 92, 298, 371
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 2 cut(s) 47, 352
AcsI RAATTY 2 cut(s) 271, 460
AcuI CTGAAG 1 cut(s) 609
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 525
AjiI CACGTC 1 cut(s) 20
AjnI CCWGG 3 cut(s) 146, 349, 382
AluBI AGCT 7 cut(s) 244, 376, 491, 519, 556, 566, 587
AluI AGCT 7 cut(s) 244, 376, 491, 519, 556, 566, 587
Alw21I GWGCWC 3 cut(s) 246, 402, 622
Alw26I GTCTC 2 cut(s) 26, 265
Alw44I GTGCAC 1 cut(s) 398
AlwI GGATC 1 cut(s) 289
AoxI GGCC 3 cut(s) 47, 176, 352
ApaLI GTGCAC 1 cut(s) 398
ApeKI GCWGC 2 cut(s) 43, 77
ApoI RAATTY 2 cut(s) 271, 460
ArsI GACNNNNNNTTYG 4 cut(s) 86, 118, 198, 230
AspLEI GCGC 1 cut(s) 130
AspS9I GGNCC 3 cut(s) 70, 94, 169
AvaII GGWCC 3 cut(s) 70, 94, 169
BaeGI GKGCMC 1 cut(s) 402
BalI TGGCCA 1 cut(s) 354
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 246
Bbv12I GWGCWC 3 cut(s) 246, 402, 622
BbvI GCAGC 2 cut(s) 30, 89
BccI CCATC 5 cut(s) 94, 163, 191, 331, 398
BceAI ACGGC 1 cut(s) 467
BcgI CGANNNNNNTGC 2 cut(s) 42, 76
BciT130I CCWGG 3 cut(s) 148, 351, 384
BcoDI GTCTC 2 cut(s) 26, 265
BfoI RGCGCY 1 cut(s) 131
BisI GCNGC 3 cut(s) 44, 47, 78
BlsI GCNGC 3 cut(s) 45, 48, 79
Bme1390I CCNGG 3 cut(s) 148, 351, 384
Bme18I GGWCC 3 cut(s) 70, 94, 169
BmgBI CACGTC 1 cut(s) 20
BmgT120I GGNCC 3 cut(s) 70, 94, 169
BmiI GGNNCC 4 cut(s) 72, 96, 129, 171
BmrFI CCNGG 3 cut(s) 148, 351, 384
BmsI GCATC 1 cut(s) 612
BpmI CTGGAG 1 cut(s) 405
Bsa29I ATCGAT 1 cut(s) 606
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 265
BsaJI CCNNGG 3 cut(s) 146, 173, 483
BsaWI WCCGGW 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 643
Bse3DI GCAATG 1 cut(s) 366
BseBI CCWGG 3 cut(s) 148, 351, 384
BseCI ATCGAT 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 146, 173, 483
BseGI GGATG 1 cut(s) 183
BseMI GCAATG 1 cut(s) 366
BseMII CTCAG 3 cut(s) 231, 563, 571
BseNI ACTGG 1 cut(s) 643
BseSI GKGCMC 1 cut(s) 402
BseXI GCAGC 2 cut(s) 30, 89
BseYI CCCAGC 2 cut(s) 73, 97
BsgI GTGCAG 1 cut(s) 46
Bsh1236I CGCG 1 cut(s) 300
BshFI GGCC 3 cut(s) 49, 178, 354
BshNI GGYRCC 1 cut(s) 127
BshVI ATCGAT 1 cut(s) 606
BsiHKAI GWGCWC 3 cut(s) 246, 402, 622
BsiSI CCGG 2 cut(s) 7, 330
BslFI GGGAC 2 cut(s) 56, 421
BsmAI GTCTC 2 cut(s) 26, 265
BsmBI CGTCTC 1 cut(s) 26
BsmFI GGGAC 2 cut(s) 56, 421
BsnI GGCC 3 cut(s) 49, 178, 354
Bso31I GGTCTC 1 cut(s) 265
Bsp1286I GDGCHC 3 cut(s) 246, 402, 622
Bsp143I GATC 1 cut(s) 294
BspACI CCGC 4 cut(s) 46, 92, 298, 371
BspANI GGCC 3 cut(s) 49, 178, 354
BspCNI CTCAG 3 cut(s) 232, 562, 570
BspDI ATCGAT 1 cut(s) 606
BspFNI CGCG 1 cut(s) 300
BspHI TCATGA 1 cut(s) 312
BspLI GGNNCC 4 cut(s) 72, 96, 129, 171
BspPI GGATC 1 cut(s) 289
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 265
BsrDI GCAATG 1 cut(s) 366
BsrI ACTGG 1 cut(s) 643
BssECI CCNNGG 3 cut(s) 146, 173, 483
BssMI GATC 1 cut(s) 294
BssNI GRCGYC 1 cut(s) 128
Bst2UI CCWGG 3 cut(s) 148, 351, 384
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 12, 517, 537
BstDEI CTNAG 3 cut(s) 240, 549, 557
BstDSI CCRYGG 1 cut(s) 483
BstF5I GGATG 1 cut(s) 183
BstFNI CGCG 1 cut(s) 300
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 1 cut(s) 130
BstKTI GATC 1 cut(s) 297
BstMAI GTCTC 2 cut(s) 26, 265
BstMBI GATC 1 cut(s) 294
BstMWI GCNNNNNNNGC 3 cut(s) 98, 368, 488
BstNI CCWGG 3 cut(s) 148, 351, 384
BstSCI CCNGG 3 cut(s) 146, 349, 382
BstSLI GKGCMC 1 cut(s) 402
BstUI CGCG 1 cut(s) 300
BstV1I GCAGC 2 cut(s) 30, 89
Bsu15I ATCGAT 1 cut(s) 606
BsuRI GGCC 3 cut(s) 49, 178, 354
BsuTUI ATCGAT 1 cut(s) 606
BtgI CCRYGG 1 cut(s) 483
BtrI CACGTC 1 cut(s) 20
BtsCI GGATG 1 cut(s) 183
BtsI GCAGTG 1 cut(s) 442
BtsIMutI CAGTG 3 cut(s) 402, 442, 636
Cac8I GCNNGC 3 cut(s) 12, 517, 537
CciI TCATGA 1 cut(s) 312
CfoI GCGC 1 cut(s) 130
Cfr13I GGNCC 3 cut(s) 70, 94, 169
ClaI ATCGAT 1 cut(s) 606
CseI GACGC 2 cut(s) 289, 521
Csp6I GTAC 1 cut(s) 524
CviAII CATG 6 cut(s) 114, 166, 307, 313, 356, 455
CviQI GTAC 1 cut(s) 524
DdeI CTNAG 3 cut(s) 240, 549, 557
DinI GGCGCC 1 cut(s) 129
DpnI GATC 1 cut(s) 296
DpnII GATC 1 cut(s) 294
EaeI YGGCCR 2 cut(s) 47, 352
Ecl136II GAGCTC 1 cut(s) 244
Eco24I GRGCYC 1 cut(s) 246
Eco31I GGTCTC 1 cut(s) 265
Eco32I GATATC 1 cut(s) 279
Eco47I GGWCC 3 cut(s) 70, 94, 169
Eco53kI GAGCTC 1 cut(s) 244
Eco57I CTGAAG 1 cut(s) 609
EcoICRI GAGCTC 1 cut(s) 244
EcoO109I RGGNCCY 1 cut(s) 70
EcoRII CCWGG 3 cut(s) 146, 349, 382
EcoRV GATATC 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 26
FaeI CATG 6 cut(s) 117, 169, 310, 316, 359, 458
FaiI YATR 8 cut(s) 115, 167, 308, 314, 357, 456, 476, 615
FaqI GGGAC 2 cut(s) 56, 421
FatI CATG 6 cut(s) 113, 165, 306, 312, 355, 454
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 3 cut(s) 44, 47, 78
FokI GGATG 1 cut(s) 170
FriOI GRGCYC 1 cut(s) 246
Fsp4HI GCNGC 3 cut(s) 44, 47, 78
GlaI GCGC 1 cut(s) 129
GluI GCNGC 3 cut(s) 44, 47, 78
GsaI CCCAGC 2 cut(s) 77, 101
GsuI CTGGAG 1 cut(s) 405
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 3 cut(s) 49, 178, 354
HapII CCGG 2 cut(s) 7, 330
HgaI GACGC 2 cut(s) 289, 521
HhaI GCGC 1 cut(s) 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 6 cut(s) 117, 169, 310, 316, 359, 458
Hin6I GCGC 1 cut(s) 128
HinP1I GCGC 1 cut(s) 128
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HindIII AAGCTT 1 cut(s) 517
HinfI GANTC 2 cut(s) 151, 387
HpaII CCGG 2 cut(s) 7, 330
Hpy166II GTNNAC 3 cut(s) 304, 400, 546
Hpy188I TCNGA 2 cut(s) 241, 552
Hpy188III TCNNGA 1 cut(s) 313
Hpy8I GTNNAC 3 cut(s) 304, 400, 546
Hpy99I CGWCG 1 cut(s) 305
HpyAV CCTTC 4 cut(s) 67, 198, 210, 523
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 19
HpyCH4V TGCA 4 cut(s) 63, 400, 458, 539
HpyF10VI GCNNNNNNNGC 3 cut(s) 98, 368, 488
HpyF3I CTNAG 3 cut(s) 240, 549, 557
HpySE526I ACGT 1 cut(s) 19
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 6 cut(s) 117, 169, 310, 316, 359, 458
HspAI GCGC 1 cut(s) 128
KasI GGCGCC 1 cut(s) 127
Kzo9I GATC 1 cut(s) 294
LmnI GCTCC 1 cut(s) 373
Lsp1109I GCAGC 2 cut(s) 30, 89
LweI GCATC 1 cut(s) 612
MaeII ACGT 1 cut(s) 19
MaeIII GTNAC 1 cut(s) 634
MalI GATC 1 cut(s) 296
MboI GATC 1 cut(s) 294
MboII GAAGA 3 cut(s) 130, 183, 228
MfeI CAATTG 1 cut(s) 498
MhlI GDGCHC 3 cut(s) 246, 402, 622
MlsI TGGCCA 1 cut(s) 354
MluCI AATT 6 cut(s) 217, 271, 460, 477, 498, 507
MluNI TGGCCA 1 cut(s) 354
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 145, 396
MnlI CCTC 9 cut(s) 25, 46, 61, 103, 183, 189, 206, 236, 250
Mox20I TGGCCA 1 cut(s) 354
MscI TGGCCA 1 cut(s) 354
MseI TTAA 1 cut(s) 624
MslI CAYNNNNRTG 1 cut(s) 311
Msp20I TGGCCA 1 cut(s) 354
MspA1I CMGCKG 1 cut(s) 92
MspI CCGG 2 cut(s) 7, 330
MspR9I CCNGG 3 cut(s) 148, 351, 384
MunI CAATTG 1 cut(s) 498
MvaI CCWGG 3 cut(s) 148, 351, 384
MvnI CGCG 1 cut(s) 300
MwoI GCNNNNNNNGC 3 cut(s) 98, 368, 488
NarI GGCGCC 1 cut(s) 128
NdeII GATC 1 cut(s) 294
NlaIII CATG 6 cut(s) 117, 169, 310, 316, 359, 458
NlaIV GGNNCC 4 cut(s) 72, 96, 129, 171
NmeAIII GCCGAG 1 cut(s) 154
NmuCI GTSAC 1 cut(s) 634
PagI TCATGA 1 cut(s) 312
PflFI GACNNNGTC 1 cut(s) 308
PkrI GCNGC 3 cut(s) 45, 48, 79
PleI GAGTC 2 cut(s) 145, 395
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 2 cut(s) 145, 395
PpuMI RGGWCCY 1 cut(s) 70
Psp124BI GAGCTC 1 cut(s) 246
Psp5II RGGWCCY 1 cut(s) 70
Psp6I CCWGG 3 cut(s) 146, 349, 382
PspFI CCCAGC 2 cut(s) 73, 97
PspGI CCWGG 3 cut(s) 146, 349, 382
PspN4I GGNNCC 4 cut(s) 72, 96, 129, 171
PspPI GGNCC 3 cut(s) 70, 94, 169
PspPPI RGGWCCY 1 cut(s) 70
PsyI GACNNNGTC 1 cut(s) 308
RsaI GTAC 1 cut(s) 525
RsaNI GTAC 1 cut(s) 524
RseI CAYNNNNRTG 1 cut(s) 311
SacI GAGCTC 1 cut(s) 246
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 624
SatI GCNGC 3 cut(s) 44, 47, 78
Sau3AI GATC 1 cut(s) 294
Sau96I GGNCC 3 cut(s) 70, 94, 169
SchI GAGTC 2 cut(s) 145, 396
ScrFI CCNGG 3 cut(s) 148, 351, 384
SduI GDGCHC 3 cut(s) 246, 402, 622
SfaNI GCATC 1 cut(s) 612
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 3 cut(s) 70, 94, 169
SmiMI CAYNNNNRTG 1 cut(s) 311
Sse9I AATT 6 cut(s) 217, 271, 460, 477, 498, 507
SsiI CCGC 4 cut(s) 46, 92, 298, 371
SspDI GGCGCC 1 cut(s) 127
SstI GAGCTC 1 cut(s) 246
StyD4I CCNGG 3 cut(s) 146, 349, 382
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 22
TaqI TCGA 4 cut(s) 31, 138, 303, 606
TasI AATT 6 cut(s) 217, 271, 460, 477, 498, 507
TauI GCSGC 1 cut(s) 49
Tru1I TTAA 1 cut(s) 624
Tru9I TTAA 1 cut(s) 624
TscAI CASTG 3 cut(s) 402, 442, 643
TseFI GTSAC 1 cut(s) 634
TseI GCWGC 2 cut(s) 43, 77
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 2 cut(s) 443, 602
TspRI CASTG 3 cut(s) 402, 442, 643
Tth111I GACNNNGTC 1 cut(s) 308
VneI GTGCAC 1 cut(s) 398
VpaK11BI GGWCC 3 cut(s) 70, 94, 169
XapI RAATTY 2 cut(s) 271, 460
XmiI GTMKAC 1 cut(s) 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.