Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007212.1

Orthogroup ID

OG0008218

Physical Location & Seq

Genomic Coordinates Forward (+)

8875 .. 10465

Gene Structure 1591 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007212.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atgtttcataattatgtgtatttcagcgatcgctttcttcctgataaagcaattgacttgctcgatgaagctggttctacagtacggctccgtcatgcacagcttcctgaagaagctcaagagcttgacaatattctgaggcagataacaaaagagaagaatgaagctagtcgtagccaagattttgagaaggctgggaaattacgcgacagagaattggaccttaagaaacagatctcagcagtaacagagaaaggcaaggagataagtgaggcattggattatgttaatggtggccctattgttactgaattggatattcaacatattttgtcttgttggactggtattccagttgagaaagtgtcaacaaatgaatctgatcgcctcctcaagatggaagagacgctccataagcgggttattggccaggatgaagcagtcagggctattagcagggctattcgtcgagctcgtgttggactgaagagtcctaatcggccaattgccagtttcatcttttctggtccaactggtgttggaaaatctgagctcgcaaaaactttggcgacttgctattttggctctgaagaatcaatggtgaggcttgatatgagtgagttcatggaaaggcacactgtttccaagctcattggttccccccctggttatgttggttacacagagggcggtcagctggttgaagccgttcgtcgccatccatacactctggtgctttttgatgagattgagaaggctcatcctgatgttttcaacttgatgcttcaaatacttgaggatggaagattgactgacggcaagggcagaactgtagatttcaagaatacactcatcattatgacgtctaatgttggaagcagtgtcattgagaaaggaggcggtaacatgggatttgacccggccaaggatgaagacaaggatagcagttacaaacaaattaagagcttggtgatggaggaattgaaacactactttcgaccagagttcttaaataggttggatgaaatgattgtttttcggcagctgagtaagttggaggtaaaggaaattgcagatataatgctgaacgaggtttatggaaggctcaagtccaaagagatagagcttcgtgtgacagagaggttcaaagacaaagtggttgacgaaggatacgacccaagctatggagcaaggcctttaagaagagccgtaatgagacttttggaggacagcatggctgaaaagatgctggcaagggagatcaaagagggtgattcagttattgtggatgttgattctgatgggaaagtgattgtgctcatcaatggcagcgctaagacagagataaagaaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

451

Amino Acids

51.05

Weight (kDa)

5.73

Isoelectric Point (pI)

43.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008218)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30120
rosa_chinensis	RchiOBHm_Chr4g0406181
rosa_laevigata	RLG00000001903 RLG00000001904 RLG00000008791
rosa_multiflora	Rmu_sc0007212.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234770 Rroxscaffold_3G00234840 Rroxscaffold_3G00234850 Rroxscaffold_3G00269310 Rroxscaffold_4G00309870 Rroxscaffold_5G00350900
rosa_rugosa	Rorug04G0066300.1 Rorug07G0222700
rosa_samantha	Rh4AG136000 Rh4BG133500 Rh4CG144200 Rh4DG131000 Rh7AG380600 Rh7BG359300 Rh7CG400000
rosa_wichuraiana	Rw0G015120 Rw4G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	489
AatII	GACGTC	1 cut(s)	866
AccB7I	CCANNNNNTGG	1 cut(s)	1184
AccII	CGCG	1 cut(s)	207
AciI	CCGC	3 cut(s)	418, 690, 900
AcoI	YGGCCR	3 cut(s)	427, 500, 921
AcuI	CTGAAG	3 cut(s)	129, 506, 609
AcyI	GRCGYC	1 cut(s)	863
AfaI	GTAC	1 cut(s)	84
AfeI	AGCGCT	1 cut(s)	1333
AfiI	CCNNNNNNNGG	4 cut(s)	397, 418, 925, 1184
AflII	CTTAAG	1 cut(s)	224
AgsI	TTSAA	7 cut(s)	323, 704, 775, 788, 841, 985, 1147
AjnI	CCWGG	2 cut(s)	429, 664
AleI	CACNNNNGTG	1 cut(s)	731
Alw21I	GWGCWC	3 cut(s)	475, 555, 1320
Alw26I	GTCTC	2 cut(s)	398, 1210
Aor51HI	AGCGCT	1 cut(s)	1333
AoxI	GGCC	5 cut(s)	295, 427, 500, 921, 1193
ApeKI	GCWGC	2 cut(s)	1042, 1329
AsiSI	GCGATCGC	1 cut(s)	31
Asp700I	GAANNNNTTC	1 cut(s)	708
AspLEI	GCGC	1 cut(s)	1334
AspS9I	GGNCC	3 cut(s)	220, 296, 527
AsuC2I	CCSGG	1 cut(s)	920
AsuHPI	GGTGA	3 cut(s)	613, 982, 1283
AvaII	GGWCC	2 cut(s)	220, 527
BalI	TGGCCA	1 cut(s)	429
BanII	GRGCYC	2 cut(s)	475, 555
BauI	CACGAG	1 cut(s)	474
BbsI	GAAGAC	1 cut(s)	939
Bbv12I	GWGCWC	3 cut(s)	475, 555, 1320
BbvI	GCAGC	2 cut(s)	1054, 1341
BccI	CCATC	5 cut(s)	391, 726, 794, 967, 1295
BceAI	ACGGC	4 cut(s)	101, 692, 832, 1193
BciT130I	CCWGG	2 cut(s)	431, 666
BciVI	GTATCC	1 cut(s)	1163
BcnI	CCSGG	1 cut(s)	920
BcoDI	GTCTC	2 cut(s)	398, 1210
BfaI	CTAG	1 cut(s)	168
BfmI	CTRYAG	2 cut(s)	78, 831
BfoI	RGCGCY	1 cut(s)	1335
BfrI	CTTAAG	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	1163
BglII	AGATCT	1 cut(s)	234
BisI	GCNGC	2 cut(s)	1043, 1330
BlsI	GCNGC	2 cut(s)	1044, 1331
Bme1390I	CCNGG	3 cut(s)	431, 666, 920
Bme18I	GGWCC	2 cut(s)	220, 527
BmgT120I	GGNCC	3 cut(s)	220, 296, 527
BmiI	GGNNCC	2 cut(s)	89, 658
BmrFI	CCNGG	3 cut(s)	431, 666, 920
BmsI	GCATC	2 cut(s)	771, 1236
BpiI	GAAGAC	1 cut(s)	939
BpuEI	CTTGAG	4 cut(s)	102, 377, 815, 1091
BpuMI	CCSGG	1 cut(s)	920
BsaHI	GRCGYC	1 cut(s)	863
BsaJI	CCNNGG	2 cut(s)	664, 924
Bsc4I	CCNNNNNNNGG	4 cut(s)	397, 418, 925, 1184
Bse1I	ACTGG	4 cut(s)	349, 353, 510, 538
BseBI	CCWGG	2 cut(s)	431, 666
BseDI	CCNNGG	2 cut(s)	664, 924
BseGI	GGATG	7 cut(s)	439, 718, 760, 805, 934, 1027, 1294
BseLI	CCNNNNNNNGG	4 cut(s)	397, 418, 925, 1184
BseMII	CTCAG	4 cut(s)	128, 252, 540, 1037
BseNI	ACTGG	4 cut(s)	349, 353, 510, 538
BseRI	GAGGAG	1 cut(s)	380
BseXI	GCAGC	2 cut(s)	1054, 1341
BseYI	CCCAGC	1 cut(s)	194
Bsh1236I	CGCG	1 cut(s)	207
Bsh1285I	CGRYCG	1 cut(s)	31
BshFI	GGCC	5 cut(s)	297, 429, 502, 923, 1195
BsiEI	CGRYCG	1 cut(s)	31
BsiHKAI	GWGCWC	3 cut(s)	475, 555, 1320
BsiSI	CCGG	1 cut(s)	920
BslI	CCNNNNNNNGG	4 cut(s)	397, 418, 925, 1184
BsmAI	GTCTC	2 cut(s)	398, 1210
BsmBI	CGTCTC	1 cut(s)	398
BsnI	GGCC	5 cut(s)	297, 429, 502, 923, 1195
Bsp1286I	GDGCHC	3 cut(s)	475, 555, 1320
Bsp143I	GATC	4 cut(s)	28, 234, 382, 1260
BspACI	CCGC	3 cut(s)	418, 690, 900
BspANI	GGCC	5 cut(s)	297, 429, 502, 923, 1195
BspCNI	CTCAG	4 cut(s)	129, 251, 541, 1038
BspFNI	CGCG	1 cut(s)	207
BspLI	GGNNCC	2 cut(s)	89, 658
BspQI	GCTCTTC	1 cut(s)	1198
BspTI	CTTAAG	1 cut(s)	224
BsrI	ACTGG	4 cut(s)	349, 353, 510, 538
BssECI	CCNNGG	2 cut(s)	664, 924
BssMI	GATC	4 cut(s)	28, 234, 382, 1260
BssNI	GRCGYC	1 cut(s)	863
BssSI	CACGAG	1 cut(s)	474
BssT1I	CCWWGG	1 cut(s)	924
Bst2BI	CACGAG	1 cut(s)	474
Bst2UI	CCWGG	2 cut(s)	431, 666
Bst4CI	ACNGT	3 cut(s)	82, 640, 832
Bst6I	CTCTTC	3 cut(s)	396, 482, 1198
BstACI	GRCGYC	1 cut(s)	863
BstAFI	CTTAAG	1 cut(s)	224
BstC8I	GCNNGC	2 cut(s)	555, 1251
BstDEI	CTNAG	5 cut(s)	137, 238, 549, 1046, 1335
BstF5I	GGATG	7 cut(s)	439, 718, 760, 805, 934, 1027, 1294
BstFNI	CGCG	1 cut(s)	207
BstH2I	RGCGCY	1 cut(s)	1335
BstHHI	GCGC	1 cut(s)	1334
BstKTI	GATC	4 cut(s)	31, 237, 385, 1263
BstMAI	GTCTC	2 cut(s)	398, 1210
BstMBI	GATC	4 cut(s)	28, 234, 382, 1260
BstMCI	CGRYCG	1 cut(s)	31
BstMWI	GCNNNNNNNGC	3 cut(s)	415, 446, 582
BstNI	CCWGG	2 cut(s)	431, 666
BstSCI	CCNGG	3 cut(s)	429, 664, 918
BstSFI	CTRYAG	2 cut(s)	78, 831
BstUI	CGCG	1 cut(s)	207
BstV1I	GCAGC	2 cut(s)	1054, 1341
BstV2I	GAAGAC	1 cut(s)	939
BstX2I	RGATCY	1 cut(s)	234
BstYI	RGATCY	1 cut(s)	234
BsuI	GTATCC	1 cut(s)	1163
BsuRI	GGCC	5 cut(s)	297, 429, 502, 923, 1195
BtsCI	GGATG	7 cut(s)	439, 718, 760, 805, 934, 1027, 1294
BtsI	GCAGTG	1 cut(s)	886
BtsIMutI	CAGTG	2 cut(s)	636, 886
Cac8I	GCNNGC	2 cut(s)	555, 1251
CfoI	GCGC	1 cut(s)	1334
Cfr13I	GGNCC	3 cut(s)	220, 296, 527
CseI	GACGC	1 cut(s)	415
Csp6I	GTAC	1 cut(s)	83
CviAII	CATG	4 cut(s)	95, 625, 907, 1234
CviQI	GTAC	1 cut(s)	83
DdeI	CTNAG	5 cut(s)	137, 238, 549, 1046, 1335
DpnI	GATC	4 cut(s)	30, 236, 384, 1262
DpnII	GATC	4 cut(s)	28, 234, 382, 1260
DrdI	GACNNNNNNGTC	1 cut(s)	489
DseDI	GACNNNNNNGTC	1 cut(s)	489
EaeI	YGGCCR	3 cut(s)	427, 500, 921
Eam1104I	CTCTTC	3 cut(s)	396, 482, 1198
EarI	CTCTTC	3 cut(s)	396, 482, 1198
Ecl136II	GAGCTC	2 cut(s)	473, 553
Eco130I	CCWWGG	1 cut(s)	924
Eco147I	AGGCCT	1 cut(s)	1195
Eco24I	GRGCYC	2 cut(s)	475, 555
Eco47I	GGWCC	2 cut(s)	220, 527
Eco47III	AGCGCT	1 cut(s)	1333
Eco53kI	GAGCTC	2 cut(s)	473, 553
Eco57I	CTGAAG	3 cut(s)	129, 506, 609
EcoICRI	GAGCTC	2 cut(s)	473, 553
EcoRII	CCWGG	2 cut(s)	429, 664
EcoT14I	CCWWGG	1 cut(s)	924
EcoT38I	GRGCYC	2 cut(s)	475, 555
ErhI	CCWWGG	1 cut(s)	924
Esp3I	CGTCTC	1 cut(s)	398
FaeI	CATG	4 cut(s)	98, 628, 910, 1237
FatI	CATG	4 cut(s)	94, 624, 906, 1233
FauI	CCCGC	1 cut(s)	411
Fnu4HI	GCNGC	2 cut(s)	1043, 1330
FokI	GGATG	7 cut(s)	446, 705, 747, 812, 941, 1034, 1301
FriOI	GRGCYC	2 cut(s)	475, 555
Fsp4HI	GCNGC	2 cut(s)	1043, 1330
FspBI	CTAG	1 cut(s)	168
GlaI	GCGC	1 cut(s)	1333
GluI	GCNGC	2 cut(s)	1043, 1330
GsaI	CCCAGC	1 cut(s)	198
HaeII	RGCGCY	1 cut(s)	1335
HaeIII	GGCC	5 cut(s)	297, 429, 502, 923, 1195
HapII	CCGG	1 cut(s)	920
HgaI	GACGC	1 cut(s)	415
HhaI	GCGC	1 cut(s)	1334
Hin1I	GRCGYC	1 cut(s)	863
Hin1II	CATG	4 cut(s)	98, 628, 910, 1237
Hin6I	GCGC	1 cut(s)	1332
HinP1I	GCGC	1 cut(s)	1332
HincII	GTYRAC	2 cut(s)	369, 1162
HindII	GTYRAC	2 cut(s)	369, 1162
HinfI	GANTC	5 cut(s)	377, 490, 593, 1274, 1295
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	3 cut(s)	613, 982, 1283
Hpy166II	GTNNAC	2 cut(s)	369, 1162
Hpy188I	TCNGA	5 cut(s)	138, 382, 550, 589, 1300
Hpy188III	TCNNGA	6 cut(s)	41, 107, 119, 394, 764, 841
Hpy8I	GTNNAC	2 cut(s)	369, 1162
Hpy99I	CGWCG	2 cut(s)	471, 717
HpyAV	CCTTC	4 cut(s)	184, 748, 1095, 1160
HpyCH4III	ACNGT	3 cut(s)	82, 640, 832
HpyCH4IV	ACGT	1 cut(s)	863
HpyCH4V	TGCA	2 cut(s)	98, 1073
HpyF10VI	GCNNNNNNNGC	3 cut(s)	415, 446, 582
HpyF3I	CTNAG	5 cut(s)	137, 238, 549, 1046, 1335
HpySE526I	ACGT	1 cut(s)	863
Hsp92I	GRCGYC	1 cut(s)	863
Hsp92II	CATG	4 cut(s)	98, 628, 910, 1237
HspAI	GCGC	1 cut(s)	1332
Kzo9I	GATC	4 cut(s)	28, 234, 382, 1260
LguI	GCTCTTC	1 cut(s)	1198
LmnI	GCTCC	3 cut(s)	93, 414, 1187
Lsp1109I	GCAGC	2 cut(s)	1054, 1341
LweI	GCATC	2 cut(s)	771, 1236
MaeI	CTAG	1 cut(s)	168
MaeII	ACGT	1 cut(s)	863
MaeIII	GTNAC	6 cut(s)	244, 304, 677, 902, 947, 1132
MalI	GATC	4 cut(s)	30, 236, 384, 1262
MboI	GATC	4 cut(s)	28, 234, 382, 1260
MboII	GAAGA	9 cut(s)	29, 122, 169, 413, 499, 602, 816, 944, 1215
MfeI	CAATTG	2 cut(s)	51, 504
MflI	RGATCY	1 cut(s)	234
MhlI	GDGCHC	3 cut(s)	475, 555, 1320
MlsI	TGGCCA	1 cut(s)	429
MluCI	AATT	9 cut(s)	10, 51, 200, 215, 311, 504, 957, 980, 1068
MluNI	TGGCCA	1 cut(s)	429
MlyI	GAGTC	1 cut(s)	499
MmeI	TCCRAC	7 cut(s)	320, 460, 520, 554, 853, 999, 1035
Mox20I	TGGCCA	1 cut(s)	429
MroXI	GAANNNNTTC	1 cut(s)	708
MscI	TGGCCA	1 cut(s)	429
MseI	TTAA	5 cut(s)	225, 288, 960, 1010, 1199
MslI	CAYNNNNRTG	4 cut(s)	12, 731, 765, 857
Msp20I	TGGCCA	1 cut(s)	429
MspA1I	CMGCKG	2 cut(s)	697, 1045
MspCI	CTTAAG	1 cut(s)	224
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	3 cut(s)	431, 666, 920
MunI	CAATTG	2 cut(s)	51, 504
MvaI	CCWGG	2 cut(s)	431, 666
MvnI	CGCG	1 cut(s)	207
MwoI	GCNNNNNNNGC	3 cut(s)	415, 446, 582
NciI	CCSGG	1 cut(s)	920
NdeII	GATC	4 cut(s)	28, 234, 382, 1260
NlaIII	CATG	4 cut(s)	98, 628, 910, 1237
NlaIV	GGNNCC	2 cut(s)	89, 658
NmuCI	GTSAC	1 cut(s)	1132
OliI	CACNNNNGTG	1 cut(s)	731
PceI	AGGCCT	1 cut(s)	1195
PciSI	GCTCTTC	1 cut(s)	1198
PcsI	WCGNNNNNNNCGW	2 cut(s)	472, 1170
PdmI	GAANNNNTTC	1 cut(s)	708
PfeI	GAWTC	4 cut(s)	377, 593, 1274, 1295
PflMI	CCANNNNNTGG	1 cut(s)	1184
PkrI	GCNGC	2 cut(s)	1044, 1331
Ple19I	CGATCG	1 cut(s)	31
PleI	GAGTC	1 cut(s)	498
PpsI	GAGTC	1 cut(s)	498
Psp124BI	GAGCTC	2 cut(s)	475, 555
Psp6I	CCWGG	2 cut(s)	429, 664
PspFI	CCCAGC	1 cut(s)	194
PspGI	CCWGG	2 cut(s)	429, 664
PspN4I	GGNNCC	2 cut(s)	89, 658
PspPI	GGNCC	3 cut(s)	220, 296, 527
PsuI	RGATCY	1 cut(s)	234
PvuI	CGATCG	1 cut(s)	31
PvuII	CAGCTG	2 cut(s)	697, 1045
RgaI	GCGATCGC	1 cut(s)	31
RsaI	GTAC	1 cut(s)	84
RsaNI	GTAC	1 cut(s)	83
RseI	CAYNNNNRTG	4 cut(s)	12, 731, 765, 857
SacI	GAGCTC	2 cut(s)	475, 555
SapI	GCTCTTC	1 cut(s)	1198
SaqAI	TTAA	5 cut(s)	225, 288, 960, 1010, 1199
SatI	GCNGC	2 cut(s)	1043, 1330
Sau3AI	GATC	4 cut(s)	28, 234, 382, 1260
Sau96I	GGNCC	3 cut(s)	220, 296, 527
SchI	GAGTC	1 cut(s)	499
ScrFI	CCNGG	3 cut(s)	431, 666, 920
SduI	GDGCHC	3 cut(s)	475, 555, 1320
SfaAI	GCGATCGC	1 cut(s)	31
SfaNI	GCATC	2 cut(s)	771, 1236
SfcI	CTRYAG	2 cut(s)	78, 831
SgfI	GCGATCGC	1 cut(s)	31
SinI	GGWCC	2 cut(s)	220, 527
SmiMI	CAYNNNNRTG	4 cut(s)	12, 731, 765, 857
SmlI	CTYRAG	5 cut(s)	117, 224, 392, 794, 1106
SmoI	CTYRAG	5 cut(s)	117, 224, 392, 794, 1106
Sse9I	AATT	9 cut(s)	10, 51, 200, 215, 311, 504, 957, 980, 1068
SseBI	AGGCCT	1 cut(s)	1195
SsiI	CCGC	3 cut(s)	418, 690, 900
SspI	AATATT	1 cut(s)	133
SspMI	CTAG	1 cut(s)	168
SstI	GAGCTC	2 cut(s)	475, 555
StuI	AGGCCT	1 cut(s)	1195
StyD4I	CCNGG	3 cut(s)	429, 664, 918
StyI	CCWWGG	1 cut(s)	924
TaaI	ACNGT	3 cut(s)	82, 640, 832
TaiI	ACGT	1 cut(s)	866
TaqI	TCGA	3 cut(s)	63, 469, 997
TasI	AATT	9 cut(s)	10, 51, 200, 215, 311, 504, 957, 980, 1068
TfiI	GAWTC	4 cut(s)	377, 593, 1274, 1295
Tru1I	TTAA	5 cut(s)	225, 288, 960, 1010, 1199
Tru9I	TTAA	5 cut(s)	225, 288, 960, 1010, 1199
TscAI	CASTG	2 cut(s)	643, 886
TseFI	GTSAC	1 cut(s)	1132
TseI	GCWGC	2 cut(s)	1042, 1329
Tsp45I	GTSAC	1 cut(s)	1132
TspDTI	ATGAA	8 cut(s)	81, 177, 390, 450, 505, 613, 945, 1038
TspGWI	ACGGA	1 cut(s)	80
TspRI	CASTG	2 cut(s)	643, 886
Van91I	CCANNNNNTGG	1 cut(s)	1184
Vha464I	CTTAAG	1 cut(s)	224
VpaK11BI	GGWCC	2 cut(s)	220, 527
XmnI	GAANNNNTTC	1 cut(s)	708
XspI	CTAG	1 cut(s)	168
ZraI	GACGTC	1 cut(s)	864

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.