Rw0G015120

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00687
OG0008218
Physical Location & Seq
Reverse (-)
11730 .. 15334
3605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G015120.1

Sequence Viewer

Length: 2076 bp
ATGTGTACTTCTTCGCTAGTAGGAGGAGCACTTGCTTTGAGAATGAGGTGCATGAGTACTAGTAGCACTAGTACTGCTTCTAGTTTCTCAGGACTCCGTAGGTTTAACGCCCTAGATAAGCTGGTGGCCACACCCAGCAGCCTACACCACGAGGAATACTCTTTTGGAATTGCAACCCTTTGGGGTTCCGAAAGTCGGAAGGGGGCTAGAAGTGGAAGAGCTAGCAGATGTGTACCTAAAGCCATGTTTGAGCGGTTCACAGACAAAGCAATTAAAGTGGTTCTGCTTGCACAAGAGGAATCAAGACGACTTGGTCACAATTTCGTGGGCACTGAGCAGATCCTTTTGGGTCTCATTGGTGAAGGAACTGGTCTTCCTTCCAAGGTTCTGAAATCATCCATGGGAATTAATCTTAAAGAGGCACGAATTCAAGTGGAGAAGATAATTGGAAGGGGTTCTGGATTTATTGCTGTTGAGATCCCATTCACTTCTCGTGCCAAACGAGTTTTGGGAGTTTTGGAACTCTCACTCGAAGAGGCTCGCCAACTTGGCCATAACTACATTGGATCCGAACACTTGCTTCTGGGACTGCTTCGAGAGGGGGAGGGTGTAGCAGCAGTTGTTCTAGCGAATTCTGGTGTCGATCCTTGTAATATTCGCACACAGGTTATCCATATGGTGGGCAGTGAGAACACAGCAGAAGCTGTTGTTGATCATAGGCGAGGGGGTGATAAGACTAAAATGCCAACACTAGAGGAGTATGGGACCAATTTAACGAAGCTAGCAGAAGAGGGAAAGTTGGATCCTGTAGTTGGAAGAGAACAACAAATATCACGTGTCATCCAAATTTTGGGTAGGCGGACTAAGAATAATCCCTGCCTTATAGGAGAACCTGGTGTTGGGAAGACTGCAATTGCAGAAGGTCTTGCTCAATGTATTGCAAGTGGCGATGCTCCAGAAACAATAGCCAAAAAGACGGTTATAACTCTTGATACGGGTCTTCTTGTGTCTGGTACCAAGTACCGCGGAGAGTTTGAGGGAAGATTGAAGATTGAAGTTGCTAATGGAGGAATTAAAAAAAGTGGTGGTGAAGTTATTCTGTTTATCGATGAGGTGCACACTTTAATTGGAGCAGGAGCAGCAGAAGGAGCATTGATACCAGCATTGGAAAGACGATTCCAACCAGTCAAAGTTCCTGAACCAACGGTGGATGAAACCATACAGGTTTTGGAGGTATATGATGAGGCCCTGAAAGCAGCTGCGCAGCTATCATACCAATACATCAGCGATCGCTTTCTTCCTGATAAAGCAATTGACTTGCTCGATGAAGCTGGTTCTACAGTACGGCTCCGTCATGCACAGCTTCCTGAAGAAGCTCAAGAGCTTGACAATATTCTGAGGCAGATAACAAAAGAGAAGAATGAAGCTAGTCGTAGCCAAGATTTTGAGAAGGTACAAAATGGAAGGAGACGCTCCATAAGGGTTATTGGCCAGGATGAAGCAGTCAGGGCTATTAGCAGGGCTATTCGTCGAGCTCGTGTTGGACTGAAGAGTCCTAATCGGCCAATTGCCAGTTTCATCTTTTCTGGTCCAACTGTGGTTCATGGAAAGGCACACTGTTTCCAAGCTCATTGGTTCCCCCCTGGTTATGTTGGTTACACAGAGGGCGGTCAGCTGGTTGAAGCCGTTCGTCGCCATCCCATACACTCCTGGTGCTTTTTGATGAGATTGAGAAGGCTCATCCTGATAAAGGAGGCGGTAACATGGGATTTGACCCGGCCAAGGGATGAAGACAAGGATAGCAGTTACAAACAAATTAAGGCTTGTAAGTTGGAGGTAAAGGAAATTGCAGATATAATGCTGAACGAGGTTTATGGAAGGCTCAAGTCCAAAGAGATAGAGCTTCGTGTGACAGAGAGGTTCAAAGACAAAGTGGTTGAACGAAGGATACGACCCAAGCTATGGAGCAAGGCCTTTAAGAAGAGCCAGGGTGATTCAGTTATTGTGGATGTTGATTCTGATGGGAAAGTGATTGTGCTCATCAATGGCAGCGCTAAGACAGAGATAAAGAAATAG

Protein Analysis

691

Amino Acids

76.12

Weight (kDa)

9.34

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Clp_N PF02861 85 - 170 5.1e-13 Clp repeat (R) N-terminal domain
Clp_N PF02861 172 - 233 3.8e-12 Clp repeat (R) N-terminal domain
AAA PF00004 293 - 379 1.3e-07 ATPase family associated with various cellular activities (AAA)
AAA_lid_9 PF17871 410 - 487 2e-22 AAA lid domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 983
AasI GACNNNNNNGTC 2 cut(s) 312, 1551
Acc16I TGCGCA 1 cut(s) 1263
Acc65I GGTACC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 1013
AccB7I CCANNNNNTGG 3 cut(s) 679, 850, 1962
AccBSI CCGCTC 1 cut(s) 253
AccII CGCG 1 cut(s) 1026
AciI CCGC 6 cut(s) 253, 859, 1024, 1026, 1668, 1757
AclWI GGATC 7 cut(s) 334, 472, 561, 574, 638, 797, 810
AcoI YGGCCR 5 cut(s) 126, 550, 1489, 1562, 1778
AcsI RAATTY 3 cut(s) 426, 631, 846
AcuI CTGAAG 2 cut(s) 1389, 1568
AcvI CACGTG 1 cut(s) 836
AfaI GTAC 8 cut(s) 7, 58, 73, 234, 1015, 1022, 1344, 1455
AfeI AGCGCT 1 cut(s) 2053
AfiI CCNNNNNNNGG 9 cut(s) 195, 679, 812, 850, 899, 1750, 1782, 1783, 1962
AflIII ACRYGT 1 cut(s) 835
AgsI TTSAA 6 cut(s) 431, 1048, 1055, 1682, 1924, 1940
AhlI ACTAGT 2 cut(s) 59, 68
AjnI CCWGG 5 cut(s) 892, 1491, 1642, 1709, 1986
AjuI GAANNNNNNNTTGG 4 cut(s) 147, 179, 882, 914
AloI GAACNNNNNNTCC 2 cut(s) 358, 390
Alw21I GWGCWC 4 cut(s) 31, 1119, 1537, 2040
Alw26I GTCTC 2 cut(s) 356, 1462
Alw44I GTGCAC 1 cut(s) 1115
AlwI GGATC 7 cut(s) 334, 472, 561, 574, 638, 797, 810
AlwNI CAGNNNCTG 1 cut(s) 704
Aor51HI AGCGCT 1 cut(s) 2053
AoxI GGCC 7 cut(s) 126, 550, 1245, 1489, 1562, 1778, 1971
ApaLI GTGCAC 1 cut(s) 1115
ApeKI GCWGC 7 cut(s) 138, 614, 1139, 1256, 1259, 1264, 2049
ApoI RAATTY 3 cut(s) 426, 631, 846
AseI ATTAAT 1 cut(s) 408
AsiSI GCGATCGC 1 cut(s) 1291
Asp700I GAANNNNTTC 3 cut(s) 454, 1095, 1686
Asp718I GGTACC 1 cut(s) 1013
AspLEI GCGC 2 cut(s) 1264, 2054
AspS9I GGNCC 3 cut(s) 765, 1246, 1589
AsuC2I CCSGG 1 cut(s) 1777
AsuHPI GGTGA 4 cut(s) 371, 740, 1100, 2003
AsuNHI GCTAGC 2 cut(s) 221, 781
AvaII GGWCC 2 cut(s) 765, 1589
BaeGI GKGCMC 2 cut(s) 332, 1119
BalI TGGCCA 3 cut(s) 128, 552, 1491
BamHI GGATCC 2 cut(s) 566, 802
BanI GGYRCC 1 cut(s) 1013
BanII GRGCYC 1 cut(s) 1537
BauI CACGAG 3 cut(s) 149, 492, 1536
BbrPI CACGTG 1 cut(s) 836
BbsI GAAGAC 4 cut(s) 365, 911, 992, 1797
Bbv12I GWGCWC 4 cut(s) 31, 1119, 1537, 2040
BbvI GCAGC 7 cut(s) 150, 626, 1151, 1246, 1268, 1276, 2061
BccI CCATC 2 cut(s) 1704, 2015
BceAI ACGGC 2 cut(s) 1361, 1670
BciT130I CCWGG 5 cut(s) 894, 1493, 1644, 1711, 1988
BciVI GTATCC 1 cut(s) 1941
BclI TGATCA 1 cut(s) 712
BcnI CCSGG 1 cut(s) 1777
BcoDI GTCTC 2 cut(s) 356, 1462
BcuI ACTAGT 2 cut(s) 59, 68
BfmI CTRYAG 2 cut(s) 807, 1338
BfoI RGCGCY 1 cut(s) 2055
BfuI GTATCC 1 cut(s) 1941
BglI GCCNNNNNGGC 1 cut(s) 549
BisI GCNGC 7 cut(s) 139, 615, 1140, 1257, 1260, 1265, 2050
BlsI GCNGC 7 cut(s) 140, 616, 1141, 1258, 1261, 1266, 2051
BmcAI AGTACT 2 cut(s) 58, 73
Bme1390I CCNGG 6 cut(s) 894, 1493, 1644, 1711, 1777, 1988
Bme18I GGWCC 2 cut(s) 765, 1589
BmgT120I GGNCC 3 cut(s) 765, 1246, 1589
BmiI GGNNCC 7 cut(s) 187, 568, 766, 804, 1015, 1349, 1637
BmrFI CCNGG 6 cut(s) 894, 1493, 1644, 1711, 1777, 1988
BmsI GCATC 1 cut(s) 940
BmtI GCTAGC 2 cut(s) 225, 785
BpiI GAAGAC 4 cut(s) 365, 911, 992, 1797
BplI GAGNNNNNCTC 2 cut(s) 143, 175
BpmI CTGGAG 1 cut(s) 939
BpuEI CTTGAG 2 cut(s) 1362, 1868
BpuMI CCSGG 1 cut(s) 1777
Bsa29I ATCGAT 1 cut(s) 1107
BsaAI YACGTR 1 cut(s) 836
BsaI GGTCTC 1 cut(s) 356
BsaJI CCNNGG 6 cut(s) 381, 399, 1024, 1642, 1781, 1987
Bsc4I CCNNNNNNNGG 9 cut(s) 195, 679, 812, 850, 899, 1750, 1782, 1783, 1962
Bse1I ACTGG 3 cut(s) 373, 1184, 1572
BseBI CCWGG 5 cut(s) 894, 1493, 1644, 1711, 1988
BseCI ATCGAT 1 cut(s) 1107
BseDI CCNNGG 6 cut(s) 381, 399, 1024, 1642, 1781, 1987
BseGI GGATG 8 cut(s) 395, 840, 1216, 1501, 1696, 1740, 1792, 2014
BseLI CCNNNNNNNGG 9 cut(s) 195, 679, 812, 850, 899, 1750, 1782, 1783, 1962
BseMII CTCAG 3 cut(s) 102, 324, 1388
BseNI ACTGG 3 cut(s) 373, 1184, 1572
BseRI GAGGAG 2 cut(s) 39, 770
BseSI GKGCMC 2 cut(s) 332, 1119
BseXI GCAGC 7 cut(s) 150, 626, 1151, 1246, 1268, 1276, 2061
BseYI CCCAGC 1 cut(s) 134
Bsh1236I CGCG 1 cut(s) 1026
Bsh1285I CGRYCG 1 cut(s) 1291
BshFI GGCC 7 cut(s) 128, 552, 1247, 1491, 1564, 1780, 1973
BshNI GGYRCC 1 cut(s) 1013
BshVI ATCGAT 1 cut(s) 1107
BsiEI CGRYCG 1 cut(s) 1291
BsiHKAI GWGCWC 4 cut(s) 31, 1119, 1537, 2040
BsiSI CCGG 1 cut(s) 1777
BslFI GGGAC 2 cut(s) 600, 778
BslI CCNNNNNNNGG 9 cut(s) 195, 679, 812, 850, 899, 1750, 1782, 1783, 1962
BsmAI GTCTC 2 cut(s) 356, 1462
BsmBI CGTCTC 1 cut(s) 1462
BsmFI GGGAC 2 cut(s) 600, 778
BsnI GGCC 7 cut(s) 128, 552, 1247, 1491, 1564, 1780, 1973
Bso31I GGTCTC 1 cut(s) 356
Bsp1286I GDGCHC 5 cut(s) 31, 332, 1119, 1537, 2040
Bsp143I GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
Bsp19I CCATGG 1 cut(s) 399
BspACI CCGC 6 cut(s) 253, 859, 1024, 1026, 1668, 1757
BspANI GGCC 7 cut(s) 128, 552, 1247, 1491, 1564, 1780, 1973
BspCNI CTCAG 3 cut(s) 101, 325, 1389
BspDI ATCGAT 1 cut(s) 1107
BspFNI CGCG 1 cut(s) 1026
BspLI GGNNCC 7 cut(s) 187, 568, 766, 804, 1015, 1349, 1637
BspOI GCTAGC 2 cut(s) 225, 785
BspPI GGATC 7 cut(s) 334, 472, 561, 574, 638, 797, 810
BspQI GCTCTTC 2 cut(s) 211, 1976
BspT107I GGYRCC 1 cut(s) 1013
BspTNI GGTCTC 1 cut(s) 356
BsrBI CCGCTC 1 cut(s) 253
BsrI ACTGG 3 cut(s) 373, 1184, 1572
BssECI CCNNGG 6 cut(s) 381, 399, 1024, 1642, 1781, 1987
BssMI GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
BssSI CACGAG 3 cut(s) 149, 492, 1536
BssT1I CCWWGG 3 cut(s) 381, 399, 1781
Bst2BI CACGAG 3 cut(s) 149, 492, 1536
Bst2UI CCWGG 5 cut(s) 894, 1493, 1644, 1711, 1988
Bst4CI ACNGT 5 cut(s) 979, 1207, 1342, 1597, 1619
Bst6I CTCTTC 6 cut(s) 211, 528, 783, 811, 1544, 1976
BstBAI YACGTR 1 cut(s) 836
BstC8I GCNNGC 4 cut(s) 223, 288, 541, 783
BstDEI CTNAG 5 cut(s) 88, 333, 864, 1397, 2055
BstDSI CCRYGG 2 cut(s) 399, 1024
BstENI CCTNNNNNAGG 1 cut(s) 1748
BstF5I GGATG 8 cut(s) 395, 840, 1216, 1501, 1696, 1740, 1792, 2014
BstFNI CGCG 1 cut(s) 1026
BstH2I RGCGCY 1 cut(s) 2055
BstHHI GCGC 2 cut(s) 1264, 2054
BstKTI GATC 7 cut(s) 342, 480, 569, 646, 715, 805, 1291
BstMAI GTCTC 2 cut(s) 356, 1462
BstMBI GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
BstMCI CGRYCG 1 cut(s) 1291
BstMWI GCNNNNNNNGC 5 cut(s) 549, 1139, 1148, 1253, 1508
BstNI CCWGG 5 cut(s) 894, 1493, 1644, 1711, 1988
BstSCI CCNGG 6 cut(s) 892, 1491, 1642, 1709, 1775, 1986
BstSFI CTRYAG 2 cut(s) 807, 1338
BstSLI GKGCMC 2 cut(s) 332, 1119
BstUI CGCG 1 cut(s) 1026
BstV1I GCAGC 7 cut(s) 150, 626, 1151, 1246, 1268, 1276, 2061
BstV2I GAAGAC 4 cut(s) 365, 911, 992, 1797
BstX2I RGATCY 4 cut(s) 339, 477, 566, 802
BstYI RGATCY 4 cut(s) 339, 477, 566, 802
Bsu15I ATCGAT 1 cut(s) 1107
BsuI GTATCC 1 cut(s) 1941
BsuRI GGCC 7 cut(s) 128, 552, 1247, 1491, 1564, 1780, 1973
BsuTUI ATCGAT 1 cut(s) 1107
BtgI CCRYGG 2 cut(s) 399, 1024
BtgZI GCGATG 1 cut(s) 963
BtsCI GGATG 8 cut(s) 395, 840, 1216, 1501, 1696, 1740, 1792, 2014
BtsI GCAGTG 1 cut(s) 691
BtsIMutI CAGTG 3 cut(s) 330, 691, 1615
Cac8I GCNNGC 4 cut(s) 223, 288, 541, 783
CaiI CAGNNNCTG 1 cut(s) 704
CfoI GCGC 2 cut(s) 1264, 2054
Cfr13I GGNCC 3 cut(s) 765, 1246, 1589
Cfr42I CCGCGG 1 cut(s) 1027
ClaI ATCGAT 1 cut(s) 1107
CseI GACGC 1 cut(s) 1479
CsiI ACCWGGT 1 cut(s) 892
Csp6I GTAC 8 cut(s) 6, 57, 72, 233, 1014, 1021, 1343, 1454
CspCI CAANNNNNGTGG 2 cut(s) 258, 293
CviAII CATG 6 cut(s) 52, 244, 400, 1355, 1604, 1764
CviQI GTAC 8 cut(s) 6, 57, 72, 233, 1014, 1021, 1343, 1454
DdeI CTNAG 5 cut(s) 88, 333, 864, 1397, 2055
DpnI GATC 7 cut(s) 341, 479, 568, 645, 714, 804, 1290
DpnII GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
DrdI GACNNNNNNGTC 2 cut(s) 312, 1551
DseDI GACNNNNNNGTC 2 cut(s) 312, 1551
EaeI YGGCCR 5 cut(s) 126, 550, 1489, 1562, 1778
Eam1104I CTCTTC 6 cut(s) 211, 528, 783, 811, 1544, 1976
EarI CTCTTC 6 cut(s) 211, 528, 783, 811, 1544, 1976
EciI GGCGGA 1 cut(s) 874
Ecl136II GAGCTC 1 cut(s) 1535
Eco130I CCWWGG 3 cut(s) 381, 399, 1781
Eco147I AGGCCT 1 cut(s) 1973
Eco24I GRGCYC 1 cut(s) 1537
Eco31I GGTCTC 1 cut(s) 356
Eco47I GGWCC 2 cut(s) 765, 1589
Eco47III AGCGCT 1 cut(s) 2053
Eco53kI GAGCTC 1 cut(s) 1535
Eco57I CTGAAG 2 cut(s) 1389, 1568
Eco72I CACGTG 1 cut(s) 836
EcoICRI GAGCTC 1 cut(s) 1535
EcoNI CCTNNNNNAGG 1 cut(s) 1748
EcoO109I RGGNCCY 1 cut(s) 1246
EcoRI GAATTC 2 cut(s) 426, 631
EcoRII CCWGG 5 cut(s) 892, 1491, 1642, 1709, 1986
EcoT14I CCWWGG 3 cut(s) 381, 399, 1781
EcoT38I GRGCYC 1 cut(s) 1537
ErhI CCWWGG 3 cut(s) 381, 399, 1781
Esp3I CGTCTC 1 cut(s) 1462
FaeI CATG 6 cut(s) 55, 247, 403, 1358, 1607, 1767
FaqI GGGAC 2 cut(s) 600, 778
FatI CATG 6 cut(s) 51, 243, 399, 1354, 1603, 1763
FauNDI CATATG 1 cut(s) 675
FbaI TGATCA 1 cut(s) 712
Fnu4HI GCNGC 7 cut(s) 139, 615, 1140, 1257, 1260, 1265, 2050
FokI GGATG 8 cut(s) 382, 827, 1223, 1508, 1683, 1727, 1799, 2021
FriOI GRGCYC 1 cut(s) 1537
Fsp4HI GCNGC 7 cut(s) 139, 615, 1140, 1257, 1260, 1265, 2050
FspI TGCGCA 1 cut(s) 1263
GlaI GCGC 2 cut(s) 1263, 2053
GluI GCNGC 7 cut(s) 139, 615, 1140, 1257, 1260, 1265, 2050
GsaI CCCAGC 1 cut(s) 138
GsuI CTGGAG 1 cut(s) 939
HaeII RGCGCY 1 cut(s) 2055
HaeIII GGCC 7 cut(s) 128, 552, 1247, 1491, 1564, 1780, 1973
HapII CCGG 1 cut(s) 1777
HgaI GACGC 1 cut(s) 1479
HhaI GCGC 2 cut(s) 1264, 2054
Hin1II CATG 6 cut(s) 55, 247, 403, 1358, 1607, 1767
Hin6I GCGC 2 cut(s) 1262, 2052
HinP1I GCGC 2 cut(s) 1262, 2052
HinfI GANTC 6 cut(s) 93, 299, 1176, 1552, 1994, 2015
HpaII CCGG 1 cut(s) 1777
HphI GGTGA 4 cut(s) 371, 740, 1100, 2003
Hpy166II GTNNAC 4 cut(s) 6, 233, 258, 1117
Hpy188I TCNGA 6 cut(s) 190, 198, 390, 571, 1398, 2020
Hpy8I GTNNAC 4 cut(s) 6, 233, 258, 1117
Hpy99I CGWCG 2 cut(s) 1533, 1695
HpyCH4III ACNGT 5 cut(s) 979, 1207, 1342, 1597, 1619
HpyCH4IV ACGT 1 cut(s) 835
HpyCH4V TGCA 9 cut(s) 51, 173, 290, 911, 917, 941, 1117, 1358, 1850
HpyF10VI GCNNNNNNNGC 5 cut(s) 549, 1139, 1148, 1253, 1508
HpyF3I CTNAG 5 cut(s) 88, 333, 864, 1397, 2055
HpySE526I ACGT 1 cut(s) 835
Hsp92II CATG 6 cut(s) 55, 247, 403, 1358, 1607, 1767
HspAI GCGC 2 cut(s) 1262, 2052
KpnI GGTACC 1 cut(s) 1017
Ksp22I TGATCA 1 cut(s) 712
KspI CCGCGG 1 cut(s) 1027
Kzo9I GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
LguI GCTCTTC 2 cut(s) 211, 1976
LmnI GCTCC 8 cut(s) 26, 958, 1130, 1136, 1148, 1353, 1478, 1965
Lsp1109I GCAGC 7 cut(s) 150, 626, 1151, 1246, 1268, 1276, 2061
LweI GCATC 1 cut(s) 940
MabI ACCWGGT 1 cut(s) 892
MaeII ACGT 1 cut(s) 835
MaeIII GTNAC 5 cut(s) 314, 1655, 1759, 1805, 1909
MalI GATC 7 cut(s) 341, 479, 568, 645, 714, 804, 1290
MbiI CCGCTC 1 cut(s) 253
MboI GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
MfeI CAATTG 3 cut(s) 912, 1311, 1566
MflI RGATCY 4 cut(s) 339, 477, 566, 802
MhlI GDGCHC 5 cut(s) 31, 332, 1119, 1537, 2040
MlsI TGGCCA 3 cut(s) 128, 552, 1491
MluNI TGGCCA 3 cut(s) 128, 552, 1491
MlyI GAGTC 2 cut(s) 87, 1561
MmeI TCCRAC 7 cut(s) 176, 780, 793, 1204, 1522, 1616, 1812
Mox20I TGGCCA 3 cut(s) 128, 552, 1491
MroXI GAANNNNTTC 3 cut(s) 454, 1095, 1686
MscI TGGCCA 3 cut(s) 128, 552, 1491
MseI TTAA 9 cut(s) 105, 273, 408, 414, 773, 1074, 1124, 1818, 1977
Msp20I TGGCCA 3 cut(s) 128, 552, 1491
MspA1I CMGCKG 3 cut(s) 1026, 1259, 1675
MspI CCGG 1 cut(s) 1777
MspR9I CCNGG 6 cut(s) 894, 1493, 1644, 1711, 1777, 1988
MunI CAATTG 3 cut(s) 912, 1311, 1566
MvaI CCWGG 5 cut(s) 894, 1493, 1644, 1711, 1988
MvnI CGCG 1 cut(s) 1026
MwoI GCNNNNNNNGC 5 cut(s) 549, 1139, 1148, 1253, 1508
NciI CCSGG 1 cut(s) 1777
NcoI CCATGG 1 cut(s) 399
NdeI CATATG 1 cut(s) 675
NdeII GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
NheI GCTAGC 2 cut(s) 221, 781
NlaIII CATG 6 cut(s) 55, 247, 403, 1358, 1607, 1767
NlaIV GGNNCC 7 cut(s) 187, 568, 766, 804, 1015, 1349, 1637
NmuCI GTSAC 2 cut(s) 314, 1909
NsbI TGCGCA 1 cut(s) 1263
PceI AGGCCT 1 cut(s) 1973
PciSI GCTCTTC 2 cut(s) 211, 1976
PcsI WCGNNNNNNNCGW 3 cut(s) 499, 1534, 1948
PdmI GAANNNNTTC 3 cut(s) 454, 1095, 1686
PfeI GAWTC 4 cut(s) 299, 1176, 1994, 2015
PflFI GACNNNGTC 1 cut(s) 312
PflMI CCANNNNNTGG 3 cut(s) 679, 850, 1962
PkrI GCNGC 7 cut(s) 140, 616, 1141, 1258, 1261, 1266, 2051
Ple19I CGATCG 1 cut(s) 1291
PleI GAGTC 2 cut(s) 87, 1560
PmaCI CACGTG 1 cut(s) 836
PmlI CACGTG 1 cut(s) 836
PpsI GAGTC 2 cut(s) 87, 1560
Ppu21I YACGTR 1 cut(s) 836
PshBI ATTAAT 1 cut(s) 408
PsiI TTATAA 1 cut(s) 983
Psp124BI GAGCTC 1 cut(s) 1537
Psp6I CCWGG 5 cut(s) 892, 1491, 1642, 1709, 1986
PspCI CACGTG 1 cut(s) 836
PspFI CCCAGC 1 cut(s) 134
PspGI CCWGG 5 cut(s) 892, 1491, 1642, 1709, 1986
PspN4I GGNNCC 7 cut(s) 187, 568, 766, 804, 1015, 1349, 1637
PspPI GGNCC 3 cut(s) 765, 1246, 1589
PsrI GAACNNNNNNTAC 2 cut(s) 1932, 1964
PstNI CAGNNNCTG 1 cut(s) 704
PsuI RGATCY 4 cut(s) 339, 477, 566, 802
PsyI GACNNNGTC 1 cut(s) 312
PvuI CGATCG 1 cut(s) 1291
PvuII CAGCTG 2 cut(s) 1259, 1675
RgaI GCGATCGC 1 cut(s) 1291
RsaI GTAC 8 cut(s) 7, 58, 73, 234, 1015, 1022, 1344, 1455
RsaNI GTAC 8 cut(s) 6, 57, 72, 233, 1014, 1021, 1343, 1454
SacI GAGCTC 1 cut(s) 1537
SacII CCGCGG 1 cut(s) 1027
SapI GCTCTTC 2 cut(s) 211, 1976
SaqAI TTAA 9 cut(s) 105, 273, 408, 414, 773, 1074, 1124, 1818, 1977
SatI GCNGC 7 cut(s) 139, 615, 1140, 1257, 1260, 1265, 2050
Sau3AI GATC 7 cut(s) 339, 477, 566, 643, 712, 802, 1288
Sau96I GGNCC 3 cut(s) 765, 1246, 1589
ScaI AGTACT 2 cut(s) 58, 73
SchI GAGTC 2 cut(s) 87, 1561
ScrFI CCNGG 6 cut(s) 894, 1493, 1644, 1711, 1777, 1988
SduI GDGCHC 5 cut(s) 31, 332, 1119, 1537, 2040
SexAI ACCWGGT 1 cut(s) 892
SfaAI GCGATCGC 1 cut(s) 1291
SfaNI GCATC 1 cut(s) 940
SfcI CTRYAG 2 cut(s) 807, 1338
Sfr303I CCGCGG 1 cut(s) 1027
SgfI GCGATCGC 1 cut(s) 1291
SgrBI CCGCGG 1 cut(s) 1027
SinI GGWCC 2 cut(s) 765, 1589
SmlI CTYRAG 2 cut(s) 1377, 1883
SmoI CTYRAG 2 cut(s) 1377, 1883
SpeI ACTAGT 2 cut(s) 59, 68
SseBI AGGCCT 1 cut(s) 1973
SsiI CCGC 6 cut(s) 253, 859, 1024, 1026, 1668, 1757
SspI AATATT 2 cut(s) 655, 1393
SstI GAGCTC 1 cut(s) 1537
StuI AGGCCT 1 cut(s) 1973
StyD4I CCNGG 6 cut(s) 892, 1491, 1642, 1709, 1775, 1986
StyI CCWWGG 3 cut(s) 381, 399, 1781
TaaI ACNGT 5 cut(s) 979, 1207, 1342, 1597, 1619
TaiI ACGT 1 cut(s) 838
TaqI TCGA 6 cut(s) 531, 595, 642, 1107, 1323, 1531
TatI WGTACW 3 cut(s) 5, 56, 71
TfiI GAWTC 4 cut(s) 299, 1176, 1994, 2015
Tru1I TTAA 9 cut(s) 105, 273, 408, 414, 773, 1074, 1124, 1818, 1977
Tru9I TTAA 9 cut(s) 105, 273, 408, 414, 773, 1074, 1124, 1818, 1977
TscAI CASTG 3 cut(s) 337, 691, 1622
TseFI GTSAC 2 cut(s) 314, 1909
TseI GCWGC 7 cut(s) 138, 614, 1139, 1256, 1259, 1264, 2049
Tsp45I GTSAC 2 cut(s) 314, 1909
TspDTI ATGAA 7 cut(s) 1227, 1341, 1437, 1512, 1567, 1592, 1803
TspGWI ACGGA 2 cut(s) 86, 1340
TspRI CASTG 3 cut(s) 337, 691, 1622
Tth111I GACNNNGTC 1 cut(s) 312
Van91I CCANNNNNTGG 3 cut(s) 679, 850, 1962
VneI GTGCAC 1 cut(s) 1115
VpaK11BI GGWCC 2 cut(s) 765, 1589
VspI ATTAAT 1 cut(s) 408
XagI CCTNNNNNAGG 1 cut(s) 1748
XapI RAATTY 3 cut(s) 426, 631, 846
XcmI CCANNNNNNNNNTGG 3 cut(s) 505, 560, 1225
XmnI GAANNNNTTC 3 cut(s) 454, 1095, 1686
ZrmI AGTACT 2 cut(s) 58, 73
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.