Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008218

Physical Location & Seq

Genomic Coordinates Reverse (-)

62229829 .. 62236261

Gene Structure 6433 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00269310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGCCCGAGCTTCCCCGCCGCCTTTGCCAAAACGCTGTCAAAGATCCGCCATCTCCGACGCGCCTAGGGGACCCGTCATCCCCGATTGGAGCCAAGCCTAGCGAAAACGCCATCTTCGTCGCACCATGGAGAAGCCATCTTCGTCGCCTACCCGGATCGGGATCCGGTGATCCAACCCAAATTTGGTCGCTCCGATTAGCCCCCGACCACACCGCACCGGACACCTCACCGCTTAGCCGCCTCAAAATCTCGGGTCTAATCCTTCGATTAGGCCATCGAAGAGAGAACCCGTGCCGGCCAACGGTTGCGGTCTTCCTCTCCCTCACCTCACCGACATCCACCATAATCTCCCCAATCGAAACAAGAACGTTGATTGAGAGATCCGGCCTCACACCCAAGTCACACAGATTGACAATGACCCCGAATCAAGCTTCCGATCTGGTAGCAACGCTAACGGCGCGGAGAAATCTAATGAGAGTATGGAAGGCCAGCTGGTTTAAGAGGTCTTTGTCTCAAAGAACAATGTCCGAGATGAGACAAGAAGAGGTCTGGAAAGTGGAAACAGATGGGCTTGTGGAGAGAGGGTGTGAAAATCAATGCAATAATATCAGCCATGGTGATAGCTCGAGACTAGAGGGAGAGAAGGTCATGAGTGCAGAAAGAAGGAAAAATAATGCTCGAATAAATATAGACAGAGATGGTGGAACCTCGGCGGTGCGATTCTCTCTCCACACCCACCAAACATTCATCACCACCCGACGGAGCACAAGTGCGTCCTCGACTCCTGCCTCCATCTCCGGCGGGGAGGGTTTCGACATCACCTACCTTCCGGTGAAGGCCGACGGGATCATCGACCCGAACCGGCTCCGGCCGAGGATTCGGGTGGAGCCTCGGATGAATGGAGGTGGGCAGGAGAGGGGGATAAGGAGCGGGACGGTTCCGACGCCGTTGGTTGTGGGGATGGGGACCGCTTGCGAGATTGCGAAGAAGGAGATGATCGAAGAGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0003674 GO:0003824 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006790 GO:0008144 GO:0008150 GO:0008152 GO:0008270 GO:0009987 GO:0016043 GO:0016226 GO:0016740 GO:0016782 GO:0016783 GO:0017076 GO:0022607 GO:0030554 GO:0031071 GO:0031163 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0051186 GO:0071840 GO:0097159 GO:0097367 GO:1901265 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko00730 ko01100 ko04122 map00730 map01100 map04122

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

336

Amino Acids

37.09

Weight (kDa)

10.17

Isoelectric Point (pI)

61.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008218)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30120
rosa_chinensis	RchiOBHm_Chr4g0406181
rosa_laevigata	RLG00000001903 RLG00000001904 RLG00000008791
rosa_multiflora	Rmu_sc0007212.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234770 Rroxscaffold_3G00234840 Rroxscaffold_3G00234850 Rroxscaffold_3G00269310 Rroxscaffold_4G00309870 Rroxscaffold_5G00350900
rosa_rugosa	Rorug04G0066300.1 Rorug07G0222700
rosa_samantha	Rh4AG136000 Rh4BG133500 Rh4CG144200 Rh4DG131000 Rh7AG380600 Rh7BG359300 Rh7CG400000
rosa_wichuraiana	Rw0G015120 Rw4G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	930
AccII	CGCG	2 cut(s)	61, 460
AclI	AACGTT	1 cut(s)	368
AclWI	GGATC	7 cut(s)	38, 156, 163, 164, 169, 375, 854
AcoI	YGGCCR	2 cut(s)	296, 869
AcsI	RAATTY	1 cut(s)	180
AcyI	GRCGYC	1 cut(s)	944
AfiI	CCNNNNNNNGG	4 cut(s)	158, 183, 301, 759
AluBI	AGCT	4 cut(s)	10, 431, 492, 624
AluI	AGCT	4 cut(s)	10, 431, 492, 624
Alw21I	GWGCWC	1 cut(s)	767
Alw26I	GTCTC	3 cut(s)	516, 529, 622
AlwI	GGATC	7 cut(s)	38, 156, 163, 164, 169, 375, 854
Ama87I	CYCGRG	3 cut(s)	5, 250, 625
AoxI	GGCC	6 cut(s)	271, 296, 385, 486, 837, 869
ApoI	RAATTY	1 cut(s)	180
AspA2I	CCTAGG	1 cut(s)	64
AspLEI	GCGC	2 cut(s)	63, 460
AspS9I	GGNCC	2 cut(s)	70, 966
AsuC2I	CCSGG	1 cut(s)	153
AsuHPI	GGTGA	8 cut(s)	179, 219, 316, 321, 629, 742, 811, 844
AvaI	CYCGRG	3 cut(s)	5, 250, 625
AvaII	GGWCC	2 cut(s)	70, 966
AvrII	CCTAGG	1 cut(s)	64
BamHI	GGATCC	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	304
Bbv12I	GWGCWC	1 cut(s)	767
BccI	CCATC	8 cut(s)	58, 119, 144, 282, 560, 692, 800, 955
BceAI	ACGGC	2 cut(s)	471, 931
BcnI	CCSGG	1 cut(s)	153
BcoDI	GTCTC	3 cut(s)	516, 529, 622
BfaI	CTAG	3 cut(s)	65, 99, 632
BisI	GCNGC	2 cut(s)	19, 238
BlnI	CCTAGG	1 cut(s)	64
BlpI	GCTNAGC	1 cut(s)	233
BlsI	GCNGC	2 cut(s)	20, 239
Bme1390I	CCNGG	1 cut(s)	153
Bme18I	GGWCC	2 cut(s)	70, 966
BmeT110I	CYCGRG	3 cut(s)	5, 250, 625
BmgT120I	GGNCC	2 cut(s)	70, 966
BmiI	GGNNCC	9 cut(s)	71, 72, 91, 163, 706, 866, 888, 939, 967
BmrFI	CCNGG	1 cut(s)	153
BpiI	GAAGAC	1 cut(s)	304
Bpu1102I	GCTNAGC	1 cut(s)	233
BpuMI	CCSGG	1 cut(s)	153
BsaBI	GATNNNNATC	1 cut(s)	160
BsaHI	GRCGYC	1 cut(s)	944
BsaJI	CCNNGG	6 cut(s)	64, 125, 613, 708, 872, 890
BsaWI	WCCGGW	3 cut(s)	164, 217, 829
BsaXI	ACNNNNNCTCC	6 cut(s)	569, 599, 630, 660, 754, 784
Bsc4I	CCNNNNNNNGG	4 cut(s)	158, 183, 301, 759
Bse118I	RCCGGY	2 cut(s)	294, 861
Bse8I	GATNNNNATC	1 cut(s)	160
BseDI	CCNNGG	6 cut(s)	64, 125, 613, 708, 872, 890
BseGI	GGATG	4 cut(s)	77, 335, 900, 966
BseJI	GATNNNNATC	1 cut(s)	160
BseLI	CCNNNNNNNGG	4 cut(s)	158, 183, 301, 759
BseX3I	CGGCCG	1 cut(s)	869
BsgI	GTGCAG	1 cut(s)	675
Bsh1236I	CGCG	2 cut(s)	61, 460
Bsh1285I	CGRYCG	1 cut(s)	872
BshFI	GGCC	6 cut(s)	273, 298, 387, 488, 839, 871
BsiEI	CGRYCG	1 cut(s)	872
BsiHKAI	GWGCWC	1 cut(s)	767
BsiHKCI	CYCGRG	3 cut(s)	5, 250, 625
BsiSI	CCGG	9 cut(s)	153, 165, 218, 295, 384, 798, 830, 862, 868
BslFI	GGGAC	3 cut(s)	83, 946, 979
BslI	CCNNNNNNNGG	4 cut(s)	158, 183, 301, 759
BsmAI	GTCTC	3 cut(s)	516, 529, 622
BsmFI	GGGAC	3 cut(s)	83, 946, 979
BsnI	GGCC	6 cut(s)	273, 298, 387, 488, 839, 871
BsoBI	CYCGRG	3 cut(s)	5, 250, 625
Bsp1286I	GDGCHC	1 cut(s)	767
Bsp143I	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
Bsp1720I	GCTNAGC	1 cut(s)	233
Bsp19I	CCATGG	2 cut(s)	125, 613
BspANI	GGCC	6 cut(s)	273, 298, 387, 488, 839, 871
BspFNI	CGCG	2 cut(s)	61, 460
BspHI	TCATGA	1 cut(s)	648
BspLI	GGNNCC	9 cut(s)	71, 72, 91, 163, 706, 866, 888, 939, 967
BspPI	GGATC	7 cut(s)	38, 156, 163, 164, 169, 375, 854
BsrBI	CCGCTC	1 cut(s)	930
BsrFI	RCCGGY	2 cut(s)	294, 861
BssAI	RCCGGY	2 cut(s)	294, 861
BssECI	CCNNGG	6 cut(s)	64, 125, 613, 708, 872, 890
BssMI	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
BssNI	GRCGYC	1 cut(s)	944
BssT1I	CCWWGG	3 cut(s)	64, 125, 613
Bst4CI	ACNGT	2 cut(s)	304, 937
Bst6I	CTCTTC	3 cut(s)	274, 537, 996
BstACI	GRCGYC	1 cut(s)	944
BstC8I	GCNNGC	3 cut(s)	296, 490, 973
BstDEI	CTNAG	1 cut(s)	233
BstDSI	CCRYGG	2 cut(s)	125, 613
BstF5I	GGATG	4 cut(s)	77, 335, 900, 966
BstFNI	CGCG	2 cut(s)	61, 460
BstHHI	GCGC	2 cut(s)	63, 460
BstKTI	GATC	8 cut(s)	46, 158, 164, 172, 383, 439, 849, 999
BstMAI	GTCTC	3 cut(s)	516, 529, 622
BstMBI	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
BstMCI	CGRYCG	1 cut(s)	872
BstMWI	GCNNNNNNNGC	2 cut(s)	24, 457
BstSCI	CCNGG	1 cut(s)	151
BstUI	CGCG	2 cut(s)	61, 460
BstV2I	GAAGAC	1 cut(s)	304
BstX2I	RGATCY	3 cut(s)	43, 161, 380
BstYI	RGATCY	3 cut(s)	43, 161, 380
BstZI	CGGCCG	1 cut(s)	869
BsuRI	GGCC	6 cut(s)	273, 298, 387, 488, 839, 871
BtgI	CCRYGG	2 cut(s)	125, 613
BtsCI	GGATG	4 cut(s)	77, 335, 900, 966
Cac8I	GCNNGC	3 cut(s)	296, 490, 973
CciI	TCATGA	1 cut(s)	648
CfoI	GCGC	2 cut(s)	63, 460
Cfr10I	RCCGGY	2 cut(s)	294, 861
Cfr13I	GGNCC	2 cut(s)	70, 966
CseI	GACGC	3 cut(s)	67, 762, 952
CviAII	CATG	3 cut(s)	126, 614, 649
DdeI	CTNAG	1 cut(s)	233
DpnI	GATC	8 cut(s)	45, 157, 163, 171, 382, 438, 848, 998
DpnII	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
EaeI	YGGCCR	2 cut(s)	296, 869
EagI	CGGCCG	1 cut(s)	869
Eam1104I	CTCTTC	3 cut(s)	274, 537, 996
EarI	CTCTTC	3 cut(s)	274, 537, 996
EciI	GGCGGA	1 cut(s)	36
EclXI	CGGCCG	1 cut(s)	869
Eco130I	CCWWGG	3 cut(s)	64, 125, 613
Eco47I	GGWCC	2 cut(s)	70, 966
Eco52I	CGGCCG	1 cut(s)	869
Eco88I	CYCGRG	3 cut(s)	5, 250, 625
EcoO109I	RGGNCCY	1 cut(s)	70
EcoT14I	CCWWGG	3 cut(s)	64, 125, 613
ErhI	CCWWGG	3 cut(s)	64, 125, 613
FaeI	CATG	3 cut(s)	129, 617, 652
FaiI	YATR	6 cut(s)	127, 344, 481, 615, 650, 689
FaqI	GGGAC	3 cut(s)	83, 946, 979
FatI	CATG	3 cut(s)	125, 613, 648
FauI	CCCGC	3 cut(s)	23, 794, 923
Fnu4HI	GCNGC	2 cut(s)	19, 238
FokI	GGATG	4 cut(s)	64, 322, 907, 973
Fsp4HI	GCNGC	2 cut(s)	19, 238
FspBI	CTAG	3 cut(s)	65, 99, 632
GlaI	GCGC	2 cut(s)	62, 459
GluI	GCNGC	2 cut(s)	19, 238
HaeIII	GGCC	6 cut(s)	273, 298, 387, 488, 839, 871
HapII	CCGG	9 cut(s)	153, 165, 218, 295, 384, 798, 830, 862, 868
HgaI	GACGC	3 cut(s)	67, 762, 952
HhaI	GCGC	2 cut(s)	63, 460
Hin1I	GRCGYC	1 cut(s)	944
Hin1II	CATG	3 cut(s)	129, 617, 652
Hin6I	GCGC	2 cut(s)	61, 458
HinP1I	GCGC	2 cut(s)	61, 458
HindIII	AAGCTT	1 cut(s)	429
HinfI	GANTC	4 cut(s)	424, 720, 781, 877
HpaII	CCGG	9 cut(s)	153, 165, 218, 295, 384, 798, 830, 862, 868
HphI	GGTGA	8 cut(s)	179, 219, 316, 321, 629, 742, 811, 844
Hpy188I	TCNGA	6 cut(s)	57, 194, 436, 529, 894, 942
Hpy188III	TCNNGA	4 cut(s)	159, 550, 627, 649
Hpy99I	CGWCG	6 cut(s)	61, 122, 147, 762, 845, 946
HpyAV	CCTTC	7 cut(s)	272, 478, 637, 657, 829, 836, 982
HpyCH4III	ACNGT	2 cut(s)	304, 937
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	2 cut(s)	600, 656
HpyF10VI	GCNNNNNNNGC	2 cut(s)	24, 457
HpyF3I	CTNAG	1 cut(s)	233
HpySE526I	ACGT	1 cut(s)	368
Hsp92I	GRCGYC	1 cut(s)	944
Hsp92II	CATG	3 cut(s)	129, 617, 652
HspAI	GCGC	2 cut(s)	61, 458
KflI	GGGWCCC	1 cut(s)	70
KroI	GCCGGC	1 cut(s)	294
KroNI	GCCGGC	1 cut(s)	296
Kzo9I	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
LmnI	GCTCC	6 cut(s)	89, 195, 762, 870, 886, 927
MaeI	CTAG	3 cut(s)	65, 99, 632
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	1 cut(s)	399
MalI	GATC	8 cut(s)	45, 157, 163, 171, 382, 438, 848, 998
MbiI	CCGCTC	1 cut(s)	930
MboI	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
MboII	GAAGA	6 cut(s)	106, 131, 291, 304, 554, 997
MflI	RGATCY	3 cut(s)	43, 161, 380
MhlI	GDGCHC	1 cut(s)	767
MluCI	AATT	1 cut(s)	180
MlyI	GAGTC	1 cut(s)	775
MmeI	TCCRAC	3 cut(s)	80, 197, 965
MroNI	GCCGGC	1 cut(s)	294
MseI	TTAA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	492
MspI	CCGG	9 cut(s)	153, 165, 218, 295, 384, 798, 830, 862, 868
MspR9I	CCNGG	1 cut(s)	153
MvnI	CGCG	2 cut(s)	61, 460
MwoI	GCNNNNNNNGC	2 cut(s)	24, 457
NaeI	GCCGGC	1 cut(s)	296
NciI	CCSGG	1 cut(s)	153
NcoI	CCATGG	2 cut(s)	125, 613
NdeII	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
NgoMIV	GCCGGC	1 cut(s)	294
NlaIII	CATG	3 cut(s)	129, 617, 652
NlaIV	GGNNCC	9 cut(s)	71, 72, 91, 163, 706, 866, 888, 939, 967
NmeAIII	GCCGAG	2 cut(s)	689, 897
NmuCI	GTSAC	1 cut(s)	399
PaeR7I	CTCGAG	1 cut(s)	625
PagI	TCATGA	1 cut(s)	648
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 849
PdiI	GCCGGC	1 cut(s)	296
PfeI	GAWTC	3 cut(s)	424, 720, 877
PkrI	GCNGC	2 cut(s)	20, 239
PleI	GAGTC	1 cut(s)	775
PpsI	GAGTC	1 cut(s)	775
PpuMI	RGGWCCY	1 cut(s)	70
Psp1406I	AACGTT	1 cut(s)	368
Psp5II	RGGWCCY	1 cut(s)	70
PspN4I	GGNNCC	9 cut(s)	71, 72, 91, 163, 706, 866, 888, 939, 967
PspPI	GGNCC	2 cut(s)	70, 966
PspPPI	RGGWCCY	1 cut(s)	70
PsuI	RGATCY	3 cut(s)	43, 161, 380
PvuII	CAGCTG	1 cut(s)	492
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	2 cut(s)	19, 238
Sau3AI	GATC	8 cut(s)	43, 155, 161, 169, 380, 436, 846, 996
Sau96I	GGNCC	2 cut(s)	70, 966
SchI	GAGTC	1 cut(s)	775
ScrFI	CCNGG	1 cut(s)	153
SduI	GDGCHC	1 cut(s)	767
Sfr274I	CTCGAG	1 cut(s)	625
SinI	GGWCC	2 cut(s)	70, 966
SlaI	CTCGAG	1 cut(s)	625
SmlI	CTYRAG	1 cut(s)	625
SmoI	CTYRAG	1 cut(s)	625
Sse9I	AATT	1 cut(s)	180
SspMI	CTAG	3 cut(s)	65, 99, 632
StyD4I	CCNGG	1 cut(s)	151
StyI	CCWWGG	3 cut(s)	64, 125, 613
TaaI	ACNGT	2 cut(s)	304, 937
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	9 cut(s)	265, 277, 357, 626, 679, 779, 813, 852, 999
TasI	AATT	1 cut(s)	180
TauI	GCSGC	2 cut(s)	21, 240
TfiI	GAWTC	3 cut(s)	424, 720, 877
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	399
Tsp45I	GTSAC	1 cut(s)	399
TspDTI	ATGAA	2 cut(s)	736, 911
TspGWI	ACGGA	1 cut(s)	775
VpaK11BI	GGWCC	2 cut(s)	70, 966
XapI	RAATTY	1 cut(s)	180
XcmI	CCANNNNNNNNNTGG	1 cut(s)	180
XhoI	CTCGAG	1 cut(s)	625
XmaJI	CCTAGG	1 cut(s)	64
XspI	CTAG	3 cut(s)	65, 99, 632

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.