Belongs to the ClpA ClpB family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g30120 |
| rosa_chinensis | RchiOBHm_Chr4g0406181 |
| rosa_laevigata | RLG00000001903 RLG00000001904 RLG00000008791 |
| rosa_multiflora | Rmu_sc0007212.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00234770 Rroxscaffold_3G00234840 Rroxscaffold_3G00234850 Rroxscaffold_3G00269310 Rroxscaffold_4G00309870 Rroxscaffold_5G00350900 |
| rosa_rugosa | Rorug04G0066300.1 Rorug07G0222700 |
| rosa_samantha | Rh4AG136000 Rh4BG133500 Rh4CG144200 Rh4DG131000 Rh7AG380600 Rh7BG359300 Rh7CG400000 |
| rosa_wichuraiana | Rw0G015120 Rw4G011160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 374 |
| Acc65I | GGTACC | 1 cut(s) | 404 |
| AccB1I | GGYRCC | 1 cut(s) | 404 |
| AccBSI | CCGCTC | 1 cut(s) | 10 |
| AciI | CCGC | 2 cut(s) | 10, 250 |
| AclWI | GGATC | 2 cut(s) | 188, 201 |
| AcsI | RAATTY | 3 cut(s) | 87, 237, 349 |
| AcvI | CACGTG | 1 cut(s) | 227 |
| AfaI | GTAC | 2 cut(s) | 406, 413 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 203, 290 |
| AflIII | ACRYGT | 1 cut(s) | 226 |
| AgsI | TTSAA | 3 cut(s) | 92, 354, 439 |
| AjnI | CCWGG | 1 cut(s) | 283 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 273, 305 |
| AluBI | AGCT | 2 cut(s) | 172, 190 |
| AluI | AGCT | 2 cut(s) | 172, 190 |
| Alw26I | GTCTC | 2 cut(s) | 119, 403 |
| AlwI | GGATC | 2 cut(s) | 188, 201 |
| ApoI | RAATTY | 3 cut(s) | 87, 237, 349 |
| Asp718I | GGTACC | 1 cut(s) | 404 |
| AsuNHI | GCTAGC | 1 cut(s) | 172 |
| BamHI | GGATCC | 1 cut(s) | 193 |
| BanI | GGYRCC | 1 cut(s) | 404 |
| BbrPI | CACGTG | 1 cut(s) | 227 |
| BbsI | GAAGAC | 1 cut(s) | 302 |
| BciT130I | CCWGG | 1 cut(s) | 285 |
| BciVI | GTATCC | 1 cut(s) | 94 |
| BcoDI | GTCTC | 2 cut(s) | 119, 403 |
| BfaI | CTAG | 2 cut(s) | 143, 173 |
| BfuI | GTATCC | 1 cut(s) | 94 |
| Bme1390I | CCNGG | 1 cut(s) | 285 |
| BmiI | GGNNCC | 3 cut(s) | 37, 195, 406 |
| BmrFI | CCNGG | 1 cut(s) | 285 |
| BmsI | GCATC | 1 cut(s) | 432 |
| BmtI | GCTAGC | 1 cut(s) | 176 |
| BpiI | GAAGAC | 1 cut(s) | 302 |
| BsaAI | YACGTR | 1 cut(s) | 227 |
| BsaJI | CCNNGG | 2 cut(s) | 29, 415 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 203, 290 |
| Bse3DI | GCAATG | 1 cut(s) | 346 |
| BseBI | CCWGG | 1 cut(s) | 285 |
| BseDI | CCNNGG | 2 cut(s) | 29, 415 |
| BseGI | GGATG | 2 cut(s) | 79, 231 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 203, 290 |
| BseMI | GCAATG | 1 cut(s) | 346 |
| BseRI | GAGGAG | 1 cut(s) | 161 |
| BshNI | GGYRCC | 1 cut(s) | 404 |
| BslFI | GGGAC | 1 cut(s) | 169 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 203, 290 |
| BsmAI | GTCTC | 2 cut(s) | 119, 403 |
| BsmFI | GGGAC | 1 cut(s) | 169 |
| Bsp143I | GATC | 1 cut(s) | 193 |
| BspACI | CCGC | 2 cut(s) | 10, 250 |
| BspLI | GGNNCC | 3 cut(s) | 37, 195, 406 |
| BspOI | GCTAGC | 1 cut(s) | 176 |
| BspPI | GGATC | 2 cut(s) | 188, 201 |
| BspT107I | GGYRCC | 1 cut(s) | 404 |
| BsrBI | CCGCTC | 1 cut(s) | 10 |
| BsrDI | GCAATG | 1 cut(s) | 346 |
| BssECI | CCNNGG | 2 cut(s) | 29, 415 |
| BssMI | GATC | 1 cut(s) | 193 |
| BssT1I | CCWWGG | 1 cut(s) | 29 |
| Bst2UI | CCWGG | 1 cut(s) | 285 |
| Bst4CI | ACNGT | 1 cut(s) | 416 |
| Bst6I | CTCTTC | 3 cut(s) | 106, 174, 202 |
| BstBAI | YACGTR | 1 cut(s) | 227 |
| BstC8I | GCNNGC | 3 cut(s) | 174, 188, 268 |
| BstDEI | CTNAG | 1 cut(s) | 255 |
| BstDSI | CCRYGG | 1 cut(s) | 415 |
| BstF5I | GGATG | 2 cut(s) | 79, 231 |
| BstKTI | GATC | 1 cut(s) | 196 |
| BstMAI | GTCTC | 2 cut(s) | 119, 403 |
| BstMBI | GATC | 1 cut(s) | 193 |
| BstNI | CCWGG | 1 cut(s) | 285 |
| BstSCI | CCNGG | 1 cut(s) | 283 |
| BstV2I | GAAGAC | 1 cut(s) | 302 |
| BstX2I | RGATCY | 1 cut(s) | 193 |
| BstYI | RGATCY | 1 cut(s) | 193 |
| BsuI | GTATCC | 1 cut(s) | 94 |
| BtgI | CCRYGG | 1 cut(s) | 415 |
| BtsCI | GGATG | 2 cut(s) | 79, 231 |
| Cac8I | GCNNGC | 3 cut(s) | 174, 188, 268 |
| CsiI | ACCWGGT | 1 cut(s) | 283 |
| Csp6I | GTAC | 2 cut(s) | 405, 412 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 397, 432 |
| CviAII | CATG | 1 cut(s) | 119 |
| CviJI | RGCY | 4 cut(s) | 172, 190, 359, 389 |
| CviKI_1 | RGCY | 4 cut(s) | 172, 190, 359, 389 |
| CviQI | GTAC | 2 cut(s) | 405, 412 |
| DdeI | CTNAG | 1 cut(s) | 255 |
| DpnI | GATC | 1 cut(s) | 195 |
| DpnII | GATC | 1 cut(s) | 193 |
| Eam1104I | CTCTTC | 3 cut(s) | 106, 174, 202 |
| EarI | CTCTTC | 3 cut(s) | 106, 174, 202 |
| EciI | GGCGGA | 1 cut(s) | 265 |
| Eco130I | CCWWGG | 1 cut(s) | 29 |
| Eco72I | CACGTG | 1 cut(s) | 227 |
| EcoRII | CCWGG | 1 cut(s) | 283 |
| EcoT14I | CCWWGG | 1 cut(s) | 29 |
| ErhI | CCWWGG | 1 cut(s) | 29 |
| FaeI | CATG | 1 cut(s) | 122 |
| FaiI | YATR | 4 cut(s) | 120, 374, 386, 448 |
| FaqI | GGGAC | 1 cut(s) | 169 |
| FatI | CATG | 1 cut(s) | 118 |
| FokI | GGATG | 2 cut(s) | 86, 218 |
| FspBI | CTAG | 2 cut(s) | 143, 173 |
| Hin1II | CATG | 1 cut(s) | 122 |
| Hpy166II | GTNNAC | 1 cut(s) | 15 |
| Hpy188III | TCNNGA | 2 cut(s) | 143, 380 |
| Hpy8I | GTNNAC | 1 cut(s) | 15 |
| HpyAV | CCTTC | 2 cut(s) | 305, 361 |
| HpyCH4III | ACNGT | 1 cut(s) | 416 |
| HpyCH4IV | ACGT | 2 cut(s) | 226, 325 |
| HpyCH4V | TGCA | 4 cut(s) | 270, 302, 308, 332 |
| HpyF3I | CTNAG | 1 cut(s) | 255 |
| HpySE526I | ACGT | 2 cut(s) | 226, 325 |
| Hsp92II | CATG | 1 cut(s) | 122 |
| KpnI | GGTACC | 1 cut(s) | 408 |
| Kzo9I | GATC | 1 cut(s) | 193 |
| LpnPI | CCDG | 6 cut(s) | 176, 210, 270, 280, 297, 387 |
| LweI | GCATC | 1 cut(s) | 432 |
| MabI | ACCWGGT | 1 cut(s) | 283 |
| MaeI | CTAG | 2 cut(s) | 143, 173 |
| MaeII | ACGT | 2 cut(s) | 226, 325 |
| MalI | GATC | 1 cut(s) | 195 |
| MbiI | CCGCTC | 1 cut(s) | 10 |
| MboI | GATC | 1 cut(s) | 193 |
| MboII | GAAGA | 5 cut(s) | 123, 191, 219, 307, 451 |
| MfeI | CAATTG | 1 cut(s) | 303 |
| MflI | RGATCY | 1 cut(s) | 193 |
| MluCI | AATT | 6 cut(s) | 87, 160, 237, 303, 349, 434 |
| MnlI | CCTC | 6 cut(s) | 64, 107, 139, 175, 421, 444 |
| MseI | TTAA | 1 cut(s) | 164 |
| MspR9I | CCNGG | 1 cut(s) | 285 |
| MunI | CAATTG | 1 cut(s) | 303 |
| MvaI | CCWGG | 1 cut(s) | 285 |
| NdeII | GATC | 1 cut(s) | 193 |
| NheI | GCTAGC | 1 cut(s) | 172 |
| NlaIII | CATG | 1 cut(s) | 122 |
| NlaIV | GGNNCC | 3 cut(s) | 37, 195, 406 |
| PmaCI | CACGTG | 1 cut(s) | 227 |
| PmlI | CACGTG | 1 cut(s) | 227 |
| Ppu21I | YACGTR | 1 cut(s) | 227 |
| PsiI | TTATAA | 1 cut(s) | 374 |
| Psp6I | CCWGG | 1 cut(s) | 283 |
| PspCI | CACGTG | 1 cut(s) | 227 |
| PspGI | CCWGG | 1 cut(s) | 283 |
| PspN4I | GGNNCC | 3 cut(s) | 37, 195, 406 |
| PsuI | RGATCY | 1 cut(s) | 193 |
| RsaI | GTAC | 2 cut(s) | 406, 413 |
| RsaNI | GTAC | 2 cut(s) | 405, 412 |
| SaqAI | TTAA | 1 cut(s) | 164 |
| Sau3AI | GATC | 1 cut(s) | 193 |
| ScrFI | CCNGG | 1 cut(s) | 285 |
| SetI | ASST | 7 cut(s) | 174, 192, 229, 286, 316, 328, 372 |
| SexAI | ACCWGGT | 1 cut(s) | 283 |
| SfaNI | GCATC | 1 cut(s) | 432 |
| Sse9I | AATT | 6 cut(s) | 87, 160, 237, 303, 349, 434 |
| SsiI | CCGC | 2 cut(s) | 10, 250 |
| SspMI | CTAG | 2 cut(s) | 143, 173 |
| StyD4I | CCNGG | 1 cut(s) | 283 |
| StyI | CCWWGG | 1 cut(s) | 29 |
| TaaI | ACNGT | 1 cut(s) | 416 |
| TaiI | ACGT | 2 cut(s) | 229, 328 |
| TasI | AATT | 6 cut(s) | 87, 160, 237, 303, 349, 434 |
| Tru1I | TTAA | 1 cut(s) | 164 |
| Tru9I | TTAA | 1 cut(s) | 164 |
| TspDTI | ATGAA | 1 cut(s) | 93 |
| XapI | RAATTY | 3 cut(s) | 87, 237, 349 |
| XbaI | TCTAGA | 1 cut(s) | 142 |
| XspI | CTAG | 2 cut(s) | 143, 173 |