Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008218

Physical Location & Seq

Genomic Coordinates Forward (+)

37889358 .. 37890086

Gene Structure 729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG359300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGATCTGTACTGCTTCCGCTGCTGCCAGGGGAGGAGCAACTGTTGCTTTGAGAATGAGGTGCAAGAGTACTAGTAGCACAAGTATCTTTTCTAGGATATCAGGACTCCGTAGGCTTAATGAGCTAGATATGGTGGCCAGAGCTAGCAGCCTAGACGACAAGGACTACTTTTCTGGAACTGCAATCCCTTGGGGTTCCGAAAGTCAAAATAGGAACAGATCAAGTGGAAGATGGGATGATGAAACTATAATTCGAAATGGGGATGCAAGTGGAAGAGGGCATGATGAGACTAAAATGCCAACTCTAGAGGAGCATGGCACCAATTTAGCCAAGCTAGCAGAAGAGGGTAAGTTGGATCCTGTTGTTGGAAGAGAACAACAAATATCACGTGTCATCACAATTTTGGGTAGGCGGACTAAGAATCATGCCTGCCTTATTGGAGAACCTGGTGTTGGGAAGACTGCAATTGCAGAAGGTCTTGCTCAACGTATTGCAAGCGGCGATGTTCCAAAAAAAATAGCGAAAAAGAAGGTTATAAGTCTTGATATGGCTCTTCTTGTGTCTGGTACCAAGTACCGCGGAGATTTTGAGGGAAAATTGAAGATGCTACTGGAGGAAATAAAAAAAAGTGATGGTCAAGTTATTCTGTTTATCGATGAGGTGTACACTTTAATTGGAGCAGGAGCAGCAGAACTGCAGAAGGAGGAATTGATGTTGCAAATTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

ko01100 map01100

Pfam Domains

Protein Families

AAA AAA_2 ClpB_D2-small Clp_N UVR

Protein Analysis

242

Amino Acids

26.32

Weight (kDa)

8.91

Isoelectric Point (pI)

38.82

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA_16	PF13191	120 - 165	2.5e-06	AAA ATPase domain
AAA	PF00004	144 - 229	3.8e-12	ATPase family associated with various cellular activities (AAA)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008218)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g30120
rosa_chinensis	RchiOBHm_Chr4g0406181
rosa_laevigata	RLG00000001903 RLG00000001904 RLG00000008791
rosa_multiflora	Rmu_sc0007212.1_g000001
rosa_roxburghii	Rroxscaffold_3G00234770 Rroxscaffold_3G00234840 Rroxscaffold_3G00234850 Rroxscaffold_3G00269310 Rroxscaffold_4G00309870 Rroxscaffold_5G00350900
rosa_rugosa	Rorug04G0066300.1 Rorug07G0222700
rosa_samantha	Rh4AG136000 Rh4BG133500 Rh4CG144200 Rh4DG131000 Rh7AG380600 Rh7BG359300 Rh7CG400000
rosa_wichuraiana	Rw0G015120 Rw4G011160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
Acc65I	GGTACC	1 cut(s)	566
AccB1I	GGYRCC	2 cut(s)	317, 566
AccII	CGCG	1 cut(s)	579
AciI	CCGC	5 cut(s)	18, 412, 498, 577, 579
AclWI	GGATC	2 cut(s)	350, 363
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	1 cut(s)	720
AcvI	CACGTG	1 cut(s)	389
AfaI	GTAC	5 cut(s)	10, 70, 568, 575, 665
AfiI	CCNNNNNNNGG	2 cut(s)	365, 452
AflIII	ACRYGT	1 cut(s)	388
AgsI	TTSAA	1 cut(s)	601
AhlI	ACTAGT	1 cut(s)	71
AjnI	CCWGG	2 cut(s)	26, 445
AjuI	GAANNNNNNNTTGG	2 cut(s)	435, 467
AluBI	AGCT	3 cut(s)	124, 143, 334
AluI	AGCT	3 cut(s)	124, 143, 334
Alw26I	GTCTC	1 cut(s)	281
AlwI	GGATC	2 cut(s)	350, 363
AoxI	GGCC	1 cut(s)	135
ApeKI	GCWGC	4 cut(s)	20, 23, 147, 686
ApoI	RAATTY	1 cut(s)	720
Asp718I	GGTACC	1 cut(s)	566
AsuII	TTCGAA	1 cut(s)	253
AsuNHI	GCTAGC	2 cut(s)	143, 334
BalI	TGGCCA	1 cut(s)	137
BamHI	GGATCC	1 cut(s)	355
BanI	GGYRCC	2 cut(s)	317, 566
BbrPI	CACGTG	1 cut(s)	389
BbsI	GAAGAC	1 cut(s)	464
BbvI	GCAGC	4 cut(s)	7, 10, 159, 698
BccI	CCATC	2 cut(s)	225, 626
BciT130I	CCWGG	2 cut(s)	28, 447
BcoDI	GTCTC	1 cut(s)	281
BcuI	ACTAGT	1 cut(s)	71
BfaI	CTAG	7 cut(s)	72, 93, 125, 144, 152, 305, 335
BfmI	CTRYAG	1 cut(s)	695
BisI	GCNGC	5 cut(s)	21, 24, 148, 499, 687
BlsI	GCNGC	5 cut(s)	22, 25, 149, 500, 688
BmcAI	AGTACT	1 cut(s)	70
Bme1390I	CCNGG	2 cut(s)	28, 447
BmiI	GGNNCC	4 cut(s)	196, 319, 357, 568
BmrFI	CCNGG	2 cut(s)	28, 447
BmsI	GCATC	2 cut(s)	253, 594
BmtI	GCTAGC	2 cut(s)	147, 338
BpiI	GAAGAC	1 cut(s)	464
BpmI	CTGGAG	1 cut(s)	632
Bpu14I	TTCGAA	1 cut(s)	253
Bsa29I	ATCGAT	1 cut(s)	654
BsaAI	YACGTR	1 cut(s)	389
BsaJI	CCNNGG	3 cut(s)	27, 188, 577
BsaXI	ACNNNNNCTCC	2 cut(s)	27, 57
Bsc4I	CCNNNNNNNGG	2 cut(s)	365, 452
Bse1I	ACTGG	1 cut(s)	615
BseBI	CCWGG	2 cut(s)	28, 447
BseCI	ATCGAT	1 cut(s)	654
BseDI	CCNNGG	3 cut(s)	27, 188, 577
BseGI	GGATG	2 cut(s)	241, 268
BseLI	CCNNNNNNNGG	2 cut(s)	365, 452
BseNI	ACTGG	1 cut(s)	615
BseRI	GAGGAG	2 cut(s)	48, 323
BseXI	GCAGC	4 cut(s)	7, 10, 159, 698
Bsh1236I	CGCG	1 cut(s)	579
BshFI	GGCC	1 cut(s)	137
BshNI	GGYRCC	2 cut(s)	317, 566
BshVI	ATCGAT	1 cut(s)	654
BslI	CCNNNNNNNGG	2 cut(s)	365, 452
BsmAI	GTCTC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	137
Bsp119I	TTCGAA	1 cut(s)	253
Bsp1407I	TGTACA	1 cut(s)	663
Bsp143I	GATC	3 cut(s)	3, 218, 355
BspACI	CCGC	5 cut(s)	18, 412, 498, 577, 579
BspANI	GGCC	1 cut(s)	137
BspDI	ATCGAT	1 cut(s)	654
BspFNI	CGCG	1 cut(s)	579
BspLI	GGNNCC	4 cut(s)	196, 319, 357, 568
BspMAI	CTGCAG	1 cut(s)	699
BspOI	GCTAGC	2 cut(s)	147, 338
BspPI	GGATC	2 cut(s)	350, 363
BspQI	GCTCTTC	1 cut(s)	558
BspT104I	TTCGAA	1 cut(s)	253
BspT107I	GGYRCC	2 cut(s)	317, 566
BsrGI	TGTACA	1 cut(s)	663
BsrI	ACTGG	1 cut(s)	615
BssECI	CCNNGG	3 cut(s)	27, 188, 577
BssMI	GATC	3 cut(s)	3, 218, 355
BssT1I	CCWWGG	1 cut(s)	188
Bst2UI	CCWGG	2 cut(s)	28, 447
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	4 cut(s)	268, 336, 364, 558
BstAPI	GCANNNNNTGC	1 cut(s)	44
BstAUI	TGTACA	1 cut(s)	663
BstBAI	YACGTR	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	253
BstC8I	GCNNGC	4 cut(s)	145, 336, 430, 496
BstDEI	CTNAG	1 cut(s)	417
BstDSI	CCRYGG	1 cut(s)	577
BstF5I	GGATG	2 cut(s)	241, 268
BstFNI	CGCG	1 cut(s)	579
BstKTI	GATC	3 cut(s)	6, 221, 358
BstMAI	GTCTC	1 cut(s)	281
BstMBI	GATC	3 cut(s)	3, 218, 355
BstMWI	GCNNNNNNNGC	5 cut(s)	20, 44, 121, 335, 686
BstNI	CCWGG	2 cut(s)	28, 447
BstSCI	CCNGG	2 cut(s)	26, 445
BstSFI	CTRYAG	1 cut(s)	695
BstUI	CGCG	1 cut(s)	579
BstV1I	GCAGC	4 cut(s)	7, 10, 159, 698
BstV2I	GAAGAC	1 cut(s)	464
BstX2I	RGATCY	1 cut(s)	355
BstYI	RGATCY	1 cut(s)	355
Bsu15I	ATCGAT	1 cut(s)	654
BsuRI	GGCC	1 cut(s)	137
BsuTUI	ATCGAT	1 cut(s)	654
BtgI	CCRYGG	1 cut(s)	577
BtgZI	GCGATG	1 cut(s)	516
BtsCI	GGATG	2 cut(s)	241, 268
Cac8I	GCNNGC	4 cut(s)	145, 336, 430, 496
Cfr42I	CCGCGG	1 cut(s)	580
ClaI	ATCGAT	1 cut(s)	654
CsiI	ACCWGGT	1 cut(s)	445
Csp6I	GTAC	5 cut(s)	9, 69, 567, 574, 664
CviAII	CATG	3 cut(s)	281, 314, 425
CviJI	RGCY	8 cut(s)	115, 124, 137, 143, 150, 329, 334, 551
CviKI_1	RGCY	8 cut(s)	115, 124, 137, 143, 150, 329, 334, 551
CviQI	GTAC	5 cut(s)	9, 69, 567, 574, 664
DdeI	CTNAG	1 cut(s)	417
DpnI	GATC	3 cut(s)	5, 220, 357
DpnII	GATC	3 cut(s)	3, 218, 355
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	4 cut(s)	268, 336, 364, 558
EarI	CTCTTC	4 cut(s)	268, 336, 364, 558
EciI	GGCGGA	1 cut(s)	427
Eco130I	CCWWGG	1 cut(s)	188
Eco32I	GATATC	1 cut(s)	99
Eco72I	CACGTG	1 cut(s)	389
EcoRII	CCWGG	2 cut(s)	26, 445
EcoRV	GATATC	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	188
ErhI	CCWWGG	1 cut(s)	188
FaeI	CATG	3 cut(s)	284, 317, 428
FaiI	YATR	7 cut(s)	131, 248, 282, 315, 426, 536, 548
FalI	AAGNNNNNCTT	2 cut(s)	152, 184
FatI	CATG	3 cut(s)	280, 313, 424
Fnu4HI	GCNGC	5 cut(s)	21, 24, 148, 499, 687
FokI	GGATG	2 cut(s)	248, 275
Fsp4HI	GCNGC	5 cut(s)	21, 24, 148, 499, 687
FspBI	CTAG	7 cut(s)	72, 93, 125, 144, 152, 305, 335
GluI	GCNGC	5 cut(s)	21, 24, 148, 499, 687
GsuI	CTGGAG	1 cut(s)	632
HaeIII	GGCC	1 cut(s)	137
Hin1II	CATG	3 cut(s)	284, 317, 428
HinfI	GANTC	2 cut(s)	105, 421
Hpy166II	GTNNAC	2 cut(s)	664, 666
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	4 cut(s)	102, 174, 305, 542
Hpy8I	GTNNAC	2 cut(s)	664, 666
HpyAV	CCTTC	3 cut(s)	467, 523, 694
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	2 cut(s)	388, 487
HpyCH4V	TGCA	8 cut(s)	63, 182, 266, 464, 470, 494, 697, 718
HpyF10VI	GCNNNNNNNGC	5 cut(s)	20, 44, 121, 335, 686
HpyF3I	CTNAG	1 cut(s)	417
HpySE526I	ACGT	2 cut(s)	388, 487
Hsp92II	CATG	3 cut(s)	284, 317, 428
KpnI	GGTACC	1 cut(s)	570
KspI	CCGCGG	1 cut(s)	580
Kzo9I	GATC	3 cut(s)	3, 218, 355
LguI	GCTCTTC	1 cut(s)	558
LmnI	GCTCC	4 cut(s)	35, 310, 677, 683
Lsp1109I	GCAGC	4 cut(s)	7, 10, 159, 698
LweI	GCATC	2 cut(s)	253, 594
MabI	ACCWGGT	1 cut(s)	445
MaeI	CTAG	7 cut(s)	72, 93, 125, 144, 152, 305, 335
MaeII	ACGT	2 cut(s)	388, 487
MalI	GATC	3 cut(s)	5, 220, 357
MboI	GATC	3 cut(s)	3, 218, 355
MboII	GAAGA	7 cut(s)	240, 285, 353, 381, 469, 545, 613
MfeI	CAATTG	1 cut(s)	465
MflI	RGATCY	1 cut(s)	355
MlsI	TGGCCA	1 cut(s)	137
MluCI	AATT	8 cut(s)	249, 322, 399, 465, 596, 672, 707, 720
MluNI	TGGCCA	1 cut(s)	137
MlyI	GAGTC	1 cut(s)	99
MmeI	TCCRAC	2 cut(s)	333, 346
MnlI	CCTC	9 cut(s)	26, 51, 269, 301, 337, 583, 607, 652, 697
Mox20I	TGGCCA	1 cut(s)	137
MscI	TGGCCA	1 cut(s)	137
MseI	TTAA	2 cut(s)	117, 671
Msp20I	TGGCCA	1 cut(s)	137
MspA1I	CMGCKG	2 cut(s)	20, 579
MspR9I	CCNGG	2 cut(s)	28, 447
MunI	CAATTG	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	28, 447
MvnI	CGCG	1 cut(s)	579
MwoI	GCNNNNNNNGC	5 cut(s)	20, 44, 121, 335, 686
NdeII	GATC	3 cut(s)	3, 218, 355
NheI	GCTAGC	2 cut(s)	143, 334
NlaIII	CATG	3 cut(s)	284, 317, 428
NlaIV	GGNNCC	4 cut(s)	196, 319, 357, 568
NspV	TTCGAA	1 cut(s)	253
PciSI	GCTCTTC	1 cut(s)	558
PfeI	GAWTC	1 cut(s)	421
PkrI	GCNGC	5 cut(s)	22, 25, 149, 500, 688
PleI	GAGTC	1 cut(s)	99
PmaCI	CACGTG	1 cut(s)	389
PmlI	CACGTG	1 cut(s)	389
PpsI	GAGTC	1 cut(s)	99
Ppu21I	YACGTR	1 cut(s)	389
PsiI	TTATAA	1 cut(s)	536
Psp6I	CCWGG	2 cut(s)	26, 445
PspCI	CACGTG	1 cut(s)	389
PspGI	CCWGG	2 cut(s)	26, 445
PspN4I	GGNNCC	4 cut(s)	196, 319, 357, 568
PstI	CTGCAG	1 cut(s)	699
PsuI	RGATCY	1 cut(s)	355
RsaI	GTAC	5 cut(s)	10, 70, 568, 575, 665
RsaNI	GTAC	5 cut(s)	9, 69, 567, 574, 664
SacII	CCGCGG	1 cut(s)	580
SapI	GCTCTTC	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	117, 671
SatI	GCNGC	5 cut(s)	21, 24, 148, 499, 687
Sau3AI	GATC	3 cut(s)	3, 218, 355
ScaI	AGTACT	1 cut(s)	70
SchI	GAGTC	1 cut(s)	99
ScrFI	CCNGG	2 cut(s)	28, 447
SexAI	ACCWGGT	1 cut(s)	445
SfaNI	GCATC	2 cut(s)	253, 594
SfcI	CTRYAG	1 cut(s)	695
Sfr303I	CCGCGG	1 cut(s)	580
SfuI	TTCGAA	1 cut(s)	253
SgrBI	CCGCGG	1 cut(s)	580
SpeI	ACTAGT	1 cut(s)	71
Sse9I	AATT	8 cut(s)	249, 322, 399, 465, 596, 672, 707, 720
SsiI	CCGC	5 cut(s)	18, 412, 498, 577, 579
SspMI	CTAG	7 cut(s)	72, 93, 125, 144, 152, 305, 335
StyD4I	CCNGG	2 cut(s)	26, 445
StyI	CCWWGG	1 cut(s)	188
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	2 cut(s)	391, 490
TaqI	TCGA	2 cut(s)	253, 654
TasI	AATT	8 cut(s)	249, 322, 399, 465, 596, 672, 707, 720
TatI	WGTACW	3 cut(s)	8, 68, 663
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	1 cut(s)	421
Tru1I	TTAA	2 cut(s)	117, 671
Tru9I	TTAA	2 cut(s)	117, 671
TseI	GCWGC	4 cut(s)	20, 23, 147, 686
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	98
XapI	RAATTY	1 cut(s)	720
XbaI	TCTAGA	1 cut(s)	304
XspI	CTAG	7 cut(s)	72, 93, 125, 144, 152, 305, 335
ZrmI	AGTACT	1 cut(s)	70

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.