Rroxscaffold_3G00234770

Belongs to the ClpA ClpB family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008218
Physical Location & Seq
Reverse (-)
21405391 .. 21406509
1119 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00234770.1

Sequence Viewer

Length: 1119 bp
ATGTGTGTACCTAAATTCATATTTGAGTGGTTCACAGCCTTTTTCCATTGGGGTTCCGAAAGTCAAAATAGGAACAGAAGTGGAAGATGGGATGATGAAACTATAATTCGAAATGGGGATACAAGTGGAAGAGGGCCTGATGAGACTAAAATGCCAACTCTAGAGGAGCATGGCACCAATTCAACCAAGCTAGCAGAAGAGGGTAAGTTGGATCCTGTTGTTGGAAGAGAACAACAAATATCACGTGTCATCACAATTTTGGGTAGGCGGACTAAGAATTATGCCTGCCTTATTGGAGAACCTAGTGTTGGGAAGACTGCAATTGCAGAAGGTCTTGCTCAACGTATTGCAAGTGGCGATGTTCCAAAAAAAATAGCGAAAAAGAAGGTTATAAGTCTTGATATGGCTCTTCTTGTGTCTGGTACCAAGTACCGCGGAGATTTTGAGGGAAAATTGAAGATGCTACTGGAGGATATAAAAAACAGTGATGGTCAAGTTATTTTGTTTATCGATGAGGTCATGTACACTTTAATTGGAGCAGGAGCAGCAGAAGCAGGAATTGATGTTGCAAATTTATTGAAACCAACTCTCGCAAGAGGTAAGCTACAGTGCATTGGAGCCACAACACTAGATGAATACATAAAGCATATTGAAAAAGACCCAGCATTGAAAAGACGATTCCAATCGGTCAAAGTTCCTGAACCAACTGTGGATGAAACCATAAGGTGGTGTTTGTTACACGGGATTGGACTGGATTGGACATTCTTATCTAGTCCAATCCCAGTTATCCCATGTTTGGCAGCAAGGGGACTCTTTTTAATGAGACTCCACAGTCCCAAAAACCACCCCGACACCGTCTACCACAAACCCACCAAAAATCATGGGATTGTGGAAGCCCCACTCACTCGATCTACTCTTCGTCTCTTCCCTTCCGTTCGTCGTTCTCTCATCATTCTCAACCTGCAATTCAACCTCAACCCACAAAAGCTGCCATTAAAACCAACAAATTTCAAAGACCCGGATCCCCTAATCGTCAACTTTAGCCAATTCAACAACCACAAATCGAAATCTACAAACAGCAAAACAACAGAATTGAACAAGAAATTCAGAAACTCATAA

Protein Analysis

372

Amino Acids

41.66

Weight (kDa)

9.51

Isoelectric Point (pI)

38.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 96 - 228 2.4e-09 ATPase family associated with various cellular activities (AAA)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 392
AasI GACNNNNNNGTC 1 cut(s) 831
Acc36I ACCTGC 1 cut(s) 969
Acc65I GGTACC 1 cut(s) 422
AccB1I GGYRCC 2 cut(s) 173, 422
AccB7I CCANNNNNTGG 1 cut(s) 726
AccI GTMKAC 1 cut(s) 858
AccII CGCG 1 cut(s) 435
AciI CCGC 3 cut(s) 268, 433, 435
AclWI GGATC 4 cut(s) 206, 219, 1016, 1029
AcsI RAATTY 4 cut(s) 14, 571, 1006, 1103
AcvI CACGTG 1 cut(s) 245
AfaI GTAC 4 cut(s) 9, 424, 431, 524
AfiI CCNNNNNNNGG 4 cut(s) 221, 308, 726, 796
AflIII ACRYGT 1 cut(s) 244
AgsI TTSAA 9 cut(s) 183, 457, 580, 653, 670, 970, 1012, 1051, 1096
AjuI GAANNNNNNNTTGG 2 cut(s) 291, 323
AluBI AGCT 3 cut(s) 190, 604, 988
AluI AGCT 3 cut(s) 190, 604, 988
Alw26I GTCTC 3 cut(s) 137, 817, 926
AlwI GGATC 4 cut(s) 206, 219, 1016, 1029
AoxI GGCC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 545, 800, 988
ApoI RAATTY 4 cut(s) 14, 571, 1006, 1103
Asp718I GGTACC 1 cut(s) 422
AspS9I GGNCC 1 cut(s) 134
AsuC2I CCSGG 1 cut(s) 1019
AsuII TTCGAA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 190
BamHI GGATCC 2 cut(s) 211, 1021
BanI GGYRCC 2 cut(s) 173, 422
BbrPI CACGTG 1 cut(s) 245
BbsI GAAGAC 1 cut(s) 320
BbvI GCAGC 3 cut(s) 557, 812, 975
BccI CCATC 2 cut(s) 81, 482
BciVI GTATCC 1 cut(s) 112
BcnI CCSGG 1 cut(s) 1019
BcoDI GTCTC 3 cut(s) 137, 817, 926
BfaI CTAG 5 cut(s) 161, 191, 303, 629, 771
BfmI CTRYAG 1 cut(s) 605
BfuAI ACCTGC 1 cut(s) 969
BfuI GTATCC 1 cut(s) 112
BisI GCNGC 3 cut(s) 546, 801, 989
BlsI GCNGC 3 cut(s) 547, 802, 990
Bme1390I CCNGG 1 cut(s) 1019
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 6 cut(s) 55, 175, 213, 424, 619, 1023
BmrFI CCNGG 1 cut(s) 1019
BmrI ACTGGG 1 cut(s) 776
BmsI GCATC 1 cut(s) 450
BmtI GCTAGC 1 cut(s) 194
BmuI ACTGGG 1 cut(s) 776
BpiI GAAGAC 1 cut(s) 320
BpmI CTGGAG 1 cut(s) 488
Bpu14I TTCGAA 1 cut(s) 109
BpuMI CCSGG 1 cut(s) 1019
Bsa29I ATCGAT 1 cut(s) 510
BsaAI YACGTR 1 cut(s) 245
BsaBI GATNNNNATC 1 cut(s) 682
BsaJI CCNNGG 1 cut(s) 433
Bsc4I CCNNNNNNNGG 4 cut(s) 221, 308, 726, 796
Bse1I ACTGG 3 cut(s) 471, 756, 782
Bse8I GATNNNNATC 1 cut(s) 682
BseCI ATCGAT 1 cut(s) 510
BseDI CCNNGG 1 cut(s) 433
BseGI GGATG 2 cut(s) 97, 718
BseJI GATNNNNATC 1 cut(s) 682
BseLI CCNNNNNNNGG 4 cut(s) 221, 308, 726, 796
BseNI ACTGG 3 cut(s) 471, 756, 782
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 3 cut(s) 557, 812, 975
BseYI CCCAGC 1 cut(s) 661
Bsh1236I CGCG 1 cut(s) 435
BshFI GGCC 1 cut(s) 136
BshNI GGYRCC 2 cut(s) 173, 422
BshVI ATCGAT 1 cut(s) 510
BsiSI CCGG 1 cut(s) 1019
BslFI GGGAC 2 cut(s) 819, 822
BslI CCNNNNNNNGG 4 cut(s) 221, 308, 726, 796
BsmAI GTCTC 3 cut(s) 137, 817, 926
BsmBI CGTCTC 1 cut(s) 926
BsmFI GGGAC 2 cut(s) 819, 822
BsnI GGCC 1 cut(s) 136
Bsp119I TTCGAA 1 cut(s) 109
Bsp1407I TGTACA 1 cut(s) 522
Bsp143I GATC 3 cut(s) 211, 908, 1021
BspACI CCGC 3 cut(s) 268, 433, 435
BspANI GGCC 1 cut(s) 136
BspDI ATCGAT 1 cut(s) 510
BspFNI CGCG 1 cut(s) 435
BspLI GGNNCC 6 cut(s) 55, 175, 213, 424, 619, 1023
BspMI ACCTGC 1 cut(s) 969
BspOI GCTAGC 1 cut(s) 194
BspPI GGATC 4 cut(s) 206, 219, 1016, 1029
BspQI GCTCTTC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 109
BspT107I GGYRCC 2 cut(s) 173, 422
BsrGI TGTACA 1 cut(s) 522
BsrI ACTGG 3 cut(s) 471, 756, 782
BssECI CCNNGG 1 cut(s) 433
BssMI GATC 3 cut(s) 211, 908, 1021
Bst4CI ACNGT 5 cut(s) 485, 609, 709, 833, 856
Bst6I CTCTTC 6 cut(s) 124, 192, 220, 414, 921, 929
BstAUI TGTACA 1 cut(s) 522
BstBAI YACGTR 1 cut(s) 245
BstBI TTCGAA 1 cut(s) 109
BstC8I GCNNGC 2 cut(s) 192, 286
BstDEI CTNAG 1 cut(s) 273
BstDSI CCRYGG 1 cut(s) 433
BstF5I GGATG 2 cut(s) 97, 718
BstFNI CGCG 1 cut(s) 435
BstKTI GATC 3 cut(s) 214, 911, 1024
BstMAI GTCTC 3 cut(s) 137, 817, 926
BstMBI GATC 3 cut(s) 211, 908, 1021
BstMWI GCNNNNNNNGC 2 cut(s) 545, 551
BstSCI CCNGG 1 cut(s) 1017
BstSFI CTRYAG 1 cut(s) 605
BstUI CGCG 1 cut(s) 435
BstV1I GCAGC 3 cut(s) 557, 812, 975
BstV2I GAAGAC 1 cut(s) 320
BstX2I RGATCY 2 cut(s) 211, 1021
BstYI RGATCY 2 cut(s) 211, 1021
Bsu15I ATCGAT 1 cut(s) 510
BsuI GTATCC 1 cut(s) 112
BsuRI GGCC 1 cut(s) 136
BsuTUI ATCGAT 1 cut(s) 510
BtgI CCRYGG 1 cut(s) 433
BtgZI GCGATG 1 cut(s) 372
BtsCI GGATG 2 cut(s) 97, 718
BtsIMutI CAGTG 2 cut(s) 490, 614
BveI ACCTGC 1 cut(s) 969
Cac8I GCNNGC 2 cut(s) 192, 286
Cfr13I GGNCC 1 cut(s) 134
Cfr42I CCGCGG 1 cut(s) 436
ClaI ATCGAT 1 cut(s) 510
Csp6I GTAC 4 cut(s) 8, 423, 430, 523
CviAII CATG 4 cut(s) 170, 520, 792, 881
CviJI RGCY 9 cut(s) 38, 136, 190, 407, 604, 620, 896, 988, 1044
CviKI_1 RGCY 9 cut(s) 38, 136, 190, 407, 604, 620, 896, 988, 1044
CviQI GTAC 4 cut(s) 8, 423, 430, 523
DdeI CTNAG 1 cut(s) 273
DpnI GATC 3 cut(s) 213, 910, 1023
DpnII GATC 3 cut(s) 211, 908, 1021
DrdI GACNNNNNNGTC 1 cut(s) 831
DseDI GACNNNNNNGTC 1 cut(s) 831
Eam1104I CTCTTC 6 cut(s) 124, 192, 220, 414, 921, 929
EarI CTCTTC 6 cut(s) 124, 192, 220, 414, 921, 929
EciI GGCGGA 1 cut(s) 283
Eco72I CACGTG 1 cut(s) 245
EcoO109I RGGNCCY 1 cut(s) 134
Esp3I CGTCTC 1 cut(s) 926
FaeI CATG 4 cut(s) 173, 523, 795, 884
FaqI GGGAC 2 cut(s) 819, 822
FatI CATG 4 cut(s) 169, 519, 791, 880
FblI GTMKAC 1 cut(s) 858
Fnu4HI GCNGC 3 cut(s) 546, 801, 989
FokI GGATG 2 cut(s) 104, 725
Fsp4HI GCNGC 3 cut(s) 546, 801, 989
FspBI CTAG 5 cut(s) 161, 191, 303, 629, 771
GluI GCNGC 3 cut(s) 546, 801, 989
GsaI CCCAGC 1 cut(s) 665
GsuI CTGGAG 1 cut(s) 488
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 1019
Hin1II CATG 4 cut(s) 173, 523, 795, 884
HincII GTYRAC 1 cut(s) 1036
HindII GTYRAC 1 cut(s) 1036
HinfI GANTC 3 cut(s) 678, 810, 825
HpaII CCGG 1 cut(s) 1019
Hpy166II GTNNAC 5 cut(s) 8, 33, 525, 859, 1036
Hpy188I TCNGA 2 cut(s) 58, 1109
Hpy188III TCNNGA 3 cut(s) 161, 398, 698
Hpy8I GTNNAC 5 cut(s) 8, 33, 525, 859, 1036
Hpy99I CGWCG 1 cut(s) 942
HpyAV CCTTC 3 cut(s) 323, 379, 939
HpyCH4III ACNGT 5 cut(s) 485, 609, 709, 833, 856
HpyCH4IV ACGT 2 cut(s) 244, 343
HpyCH4V TGCA 6 cut(s) 320, 326, 350, 569, 612, 964
HpyF10VI GCNNNNNNNGC 2 cut(s) 545, 551
HpyF3I CTNAG 1 cut(s) 273
HpySE526I ACGT 2 cut(s) 244, 343
Hsp92II CATG 4 cut(s) 173, 523, 795, 884
KpnI GGTACC 1 cut(s) 426
KspI CCGCGG 1 cut(s) 436
Kzo9I GATC 3 cut(s) 211, 908, 1021
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 4 cut(s) 166, 536, 542, 617
Lsp1109I GCAGC 3 cut(s) 557, 812, 975
LweI GCATC 1 cut(s) 450
MaeI CTAG 5 cut(s) 161, 191, 303, 629, 771
MaeII ACGT 2 cut(s) 244, 343
MaeIII GTNAC 1 cut(s) 735
MalI GATC 3 cut(s) 213, 910, 1023
MboI GATC 3 cut(s) 211, 908, 1021
MboII GAAGA 9 cut(s) 96, 141, 209, 237, 325, 401, 469, 908, 916
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 2 cut(s) 211, 1021
MlyI GAGTC 2 cut(s) 804, 819
MmeI TCCRAC 2 cut(s) 189, 202
MnlI CCTC 8 cut(s) 125, 157, 193, 439, 463, 508, 590, 983
MseI TTAA 3 cut(s) 530, 818, 995
MspA1I CMGCKG 1 cut(s) 435
MspI CCGG 1 cut(s) 1019
MspR9I CCNGG 1 cut(s) 1019
MunI CAATTG 1 cut(s) 321
MvnI CGCG 1 cut(s) 435
MwoI GCNNNNNNNGC 2 cut(s) 545, 551
NciI CCSGG 1 cut(s) 1019
NdeII GATC 3 cut(s) 211, 908, 1021
NheI GCTAGC 1 cut(s) 190
NlaIII CATG 4 cut(s) 173, 523, 795, 884
NlaIV GGNNCC 6 cut(s) 55, 175, 213, 424, 619, 1023
NspV TTCGAA 1 cut(s) 109
PciSI GCTCTTC 1 cut(s) 414
PfeI GAWTC 1 cut(s) 678
PflFI GACNNNGTC 1 cut(s) 854
PflMI CCANNNNNTGG 1 cut(s) 726
PkrI GCNGC 3 cut(s) 547, 802, 990
PleI GAGTC 2 cut(s) 804, 819
PmaCI CACGTG 1 cut(s) 245
PmlI CACGTG 1 cut(s) 245
PpsI GAGTC 2 cut(s) 804, 819
Ppu21I YACGTR 1 cut(s) 245
PsiI TTATAA 1 cut(s) 392
PspCI CACGTG 1 cut(s) 245
PspFI CCCAGC 1 cut(s) 661
PspN4I GGNNCC 6 cut(s) 55, 175, 213, 424, 619, 1023
PspPI GGNCC 1 cut(s) 134
PsuI RGATCY 2 cut(s) 211, 1021
PsyI GACNNNGTC 1 cut(s) 854
RsaI GTAC 4 cut(s) 9, 424, 431, 524
RsaNI GTAC 4 cut(s) 8, 423, 430, 523
SacII CCGCGG 1 cut(s) 436
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 3 cut(s) 530, 818, 995
SatI GCNGC 3 cut(s) 546, 801, 989
Sau3AI GATC 3 cut(s) 211, 908, 1021
Sau96I GGNCC 1 cut(s) 134
SchI GAGTC 2 cut(s) 804, 819
ScrFI CCNGG 1 cut(s) 1019
SfaNI GCATC 1 cut(s) 450
SfcI CTRYAG 1 cut(s) 605
Sfr303I CCGCGG 1 cut(s) 436
SfuI TTCGAA 1 cut(s) 109
SgrBI CCGCGG 1 cut(s) 436
SsiI CCGC 3 cut(s) 268, 433, 435
SspMI CTAG 5 cut(s) 161, 191, 303, 629, 771
StyD4I CCNGG 1 cut(s) 1017
TaaI ACNGT 5 cut(s) 485, 609, 709, 833, 856
TaiI ACGT 2 cut(s) 247, 346
TaqI TCGA 4 cut(s) 109, 510, 907, 1064
TaqII GACCGA 1 cut(s) 676
TatI WGTACW 1 cut(s) 522
TfiI GAWTC 1 cut(s) 678
Tru1I TTAA 3 cut(s) 530, 818, 995
Tru9I TTAA 3 cut(s) 530, 818, 995
TscAI CASTG 2 cut(s) 490, 614
TseI GCWGC 3 cut(s) 545, 800, 988
TspDTI ATGAA 4 cut(s) 7, 111, 648, 729
TspGWI ACGGA 1 cut(s) 922
TspRI CASTG 2 cut(s) 490, 614
Tth111I GACNNNGTC 1 cut(s) 854
Van91I CCANNNNNTGG 1 cut(s) 726
XapI RAATTY 4 cut(s) 14, 571, 1006, 1103
XbaI TCTAGA 1 cut(s) 160
XmiI GTMKAC 1 cut(s) 858
XspI CTAG 5 cut(s) 161, 191, 303, 629, 771
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.