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| Species | Orthologous Gene IDs |
|---|---|
| fragaria_vesca | FvH4_5g30120 |
| rosa_chinensis | RchiOBHm_Chr4g0406181 |
| rosa_laevigata | RLG00000001903 RLG00000001904 RLG00000008791 |
| rosa_multiflora | Rmu_sc0007212.1_g000001 |
| rosa_roxburghii | Rroxscaffold_3G00234770 Rroxscaffold_3G00234840 Rroxscaffold_3G00234850 Rroxscaffold_3G00269310 Rroxscaffold_4G00309870 Rroxscaffold_5G00350900 |
| rosa_rugosa | Rorug04G0066300.1 Rorug07G0222700 |
| rosa_samantha | Rh4AG136000 Rh4BG133500 Rh4CG144200 Rh4DG131000 Rh7AG380600 Rh7BG359300 Rh7CG400000 |
| rosa_wichuraiana | Rw0G015120 Rw4G011160 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 243 |
| AciI | CCGC | 3 cut(s) | 80, 365, 420 |
| AclWI | GGATC | 4 cut(s) | 139, 394, 407, 560 |
| AfaI | GTAC | 2 cut(s) | 16, 173 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 266, 513 |
| AgsI | TTSAA | 1 cut(s) | 373 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 96, 128 |
| AluBI | AGCT | 1 cut(s) | 571 |
| AluI | AGCT | 1 cut(s) | 571 |
| Alw21I | GWGCWC | 1 cut(s) | 475 |
| Alw26I | GTCTC | 2 cut(s) | 194, 229 |
| AlwI | GGATC | 4 cut(s) | 139, 394, 407, 560 |
| AoxI | GGCC | 1 cut(s) | 543 |
| AspS9I | GGNCC | 1 cut(s) | 482 |
| AsuC2I | CCSGG | 1 cut(s) | 464 |
| AsuHPI | GGTGA | 2 cut(s) | 449, 518 |
| AvaII | GGWCC | 1 cut(s) | 482 |
| BamHI | GGATCC | 1 cut(s) | 399 |
| Bbv12I | GWGCWC | 1 cut(s) | 475 |
| BccI | CCATC | 2 cut(s) | 391, 509 |
| BcnI | CCSGG | 1 cut(s) | 464 |
| BcoDI | GTCTC | 2 cut(s) | 194, 229 |
| BfaI | CTAG | 1 cut(s) | 101 |
| BfmI | CTRYAG | 1 cut(s) | 19 |
| Bme1390I | CCNGG | 1 cut(s) | 464 |
| Bme18I | GGWCC | 1 cut(s) | 482 |
| BmgT120I | GGNCC | 1 cut(s) | 482 |
| BmiI | GGNNCC | 3 cut(s) | 401, 483, 594 |
| BmrFI | CCNGG | 1 cut(s) | 464 |
| BpuMI | CCSGG | 1 cut(s) | 464 |
| BsaJI | CCNNGG | 2 cut(s) | 292, 415 |
| BsaWI | WCCGGW | 1 cut(s) | 573 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 462, 492 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 266, 513 |
| Bse118I | RCCGGY | 1 cut(s) | 266 |
| BseDI | CCNNGG | 2 cut(s) | 292, 415 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 266, 513 |
| BseRI | GAGGAG | 1 cut(s) | 482 |
| BshFI | GGCC | 1 cut(s) | 545 |
| BsiHKAI | GWGCWC | 1 cut(s) | 475 |
| BsiSI | CCGG | 4 cut(s) | 267, 464, 507, 574 |
| BslFI | GGGAC | 2 cut(s) | 231, 234 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 266, 513 |
| BsmAI | GTCTC | 2 cut(s) | 194, 229 |
| BsmFI | GGGAC | 2 cut(s) | 231, 234 |
| BsnI | GGCC | 1 cut(s) | 545 |
| Bsp1286I | GDGCHC | 1 cut(s) | 475 |
| Bsp143I | GATC | 4 cut(s) | 144, 320, 399, 552 |
| Bsp19I | CCATGG | 1 cut(s) | 292 |
| BspACI | CCGC | 3 cut(s) | 80, 365, 420 |
| BspANI | GGCC | 1 cut(s) | 545 |
| BspHI | TCATGA | 1 cut(s) | 133 |
| BspLI | GGNNCC | 3 cut(s) | 401, 483, 594 |
| BspPI | GGATC | 4 cut(s) | 139, 394, 407, 560 |
| BsrFI | RCCGGY | 1 cut(s) | 266 |
| BssAI | RCCGGY | 1 cut(s) | 266 |
| BssECI | CCNNGG | 2 cut(s) | 292, 415 |
| BssMI | GATC | 4 cut(s) | 144, 320, 399, 552 |
| BssT1I | CCWWGG | 1 cut(s) | 292 |
| Bst4CI | ACNGT | 2 cut(s) | 192, 245 |
| Bst6I | CTCTTC | 1 cut(s) | 333 |
| BstDSI | CCRYGG | 1 cut(s) | 292 |
| BstKTI | GATC | 4 cut(s) | 147, 323, 402, 555 |
| BstMAI | GTCTC | 2 cut(s) | 194, 229 |
| BstMBI | GATC | 4 cut(s) | 144, 320, 399, 552 |
| BstSCI | CCNGG | 1 cut(s) | 462 |
| BstSFI | CTRYAG | 1 cut(s) | 19 |
| BstX2I | RGATCY | 1 cut(s) | 399 |
| BstYI | RGATCY | 1 cut(s) | 399 |
| BsuRI | GGCC | 1 cut(s) | 545 |
| BtgI | CCRYGG | 1 cut(s) | 292 |
| CciI | TCATGA | 1 cut(s) | 133 |
| Cfr10I | RCCGGY | 1 cut(s) | 266 |
| Cfr13I | GGNCC | 1 cut(s) | 482 |
| Csp6I | GTAC | 2 cut(s) | 15, 172 |
| CviAII | CATG | 3 cut(s) | 134, 175, 293 |
| CviJI | RGCY | 6 cut(s) | 270, 308, 414, 545, 571, 595 |
| CviKI_1 | RGCY | 6 cut(s) | 270, 308, 414, 545, 571, 595 |
| CviQI | GTAC | 2 cut(s) | 15, 172 |
| DpnI | GATC | 4 cut(s) | 146, 322, 401, 554 |
| DpnII | GATC | 4 cut(s) | 144, 320, 399, 552 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 243 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 243 |
| Eam1104I | CTCTTC | 1 cut(s) | 333 |
| EarI | CTCTTC | 1 cut(s) | 333 |
| Eco130I | CCWWGG | 1 cut(s) | 292 |
| Eco47I | GGWCC | 1 cut(s) | 482 |
| EcoO109I | RGGNCCY | 1 cut(s) | 482 |
| EcoT14I | CCWWGG | 1 cut(s) | 292 |
| ErhI | CCWWGG | 1 cut(s) | 292 |
| FaeI | CATG | 3 cut(s) | 137, 178, 296 |
| FaiI | YATR | 9 cut(s) | 8, 21, 27, 135, 176, 195, 197, 209, 294 |
| FaqI | GGGAC | 2 cut(s) | 231, 234 |
| FatI | CATG | 3 cut(s) | 133, 174, 292 |
| FauI | CCCGC | 1 cut(s) | 372 |
| FspBI | CTAG | 1 cut(s) | 101 |
| HaeIII | GGCC | 1 cut(s) | 545 |
| HapII | CCGG | 4 cut(s) | 267, 464, 507, 574 |
| Hin1II | CATG | 3 cut(s) | 137, 178, 296 |
| HinfI | GANTC | 5 cut(s) | 222, 237, 427, 489, 583 |
| HpaII | CCGG | 4 cut(s) | 267, 464, 507, 574 |
| HphI | GGTGA | 2 cut(s) | 449, 518 |
| Hpy166II | GTNNAC | 1 cut(s) | 89 |
| Hpy188I | TCNGA | 1 cut(s) | 394 |
| Hpy188III | TCNNGA | 2 cut(s) | 134, 403 |
| Hpy8I | GTNNAC | 1 cut(s) | 89 |
| Hpy99I | CGWCG | 2 cut(s) | 345, 551 |
| HpyAV | CCTTC | 3 cut(s) | 343, 535, 543 |
| HpyCH4III | ACNGT | 2 cut(s) | 192, 245 |
| HpyCH4V | TGCA | 1 cut(s) | 29 |
| Hsp92II | CATG | 3 cut(s) | 137, 178, 296 |
| Kzo9I | GATC | 4 cut(s) | 144, 320, 399, 552 |
| LmnI | GCTCC | 3 cut(s) | 470, 576, 592 |
| LpnPI | CCDG | 5 cut(s) | 280, 477, 520, 581, 587 |
| MaeI | CTAG | 1 cut(s) | 101 |
| MalI | GATC | 4 cut(s) | 146, 322, 401, 554 |
| MboI | GATC | 4 cut(s) | 144, 320, 399, 552 |
| MboII | GAAGA | 1 cut(s) | 320 |
| MflI | RGATCY | 1 cut(s) | 399 |
| MhlI | GDGCHC | 1 cut(s) | 475 |
| MluCI | AATT | 4 cut(s) | 74, 154, 368, 407 |
| MlyI | GAGTC | 3 cut(s) | 216, 231, 483 |
| MnlI | CCTC | 7 cut(s) | 386, 425, 495, 503, 506, 508, 573 |
| MseI | TTAA | 4 cut(s) | 51, 126, 153, 230 |
| MspI | CCGG | 4 cut(s) | 267, 464, 507, 574 |
| MspR9I | CCNGG | 1 cut(s) | 464 |
| NciI | CCSGG | 1 cut(s) | 464 |
| NcoI | CCATGG | 1 cut(s) | 292 |
| NdeII | GATC | 4 cut(s) | 144, 320, 399, 552 |
| NlaIII | CATG | 3 cut(s) | 137, 178, 296 |
| NlaIV | GGNNCC | 3 cut(s) | 401, 483, 594 |
| NmeAIII | GCCGAG | 1 cut(s) | 396 |
| PagI | TCATGA | 1 cut(s) | 133 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 555 |
| PfeI | GAWTC | 2 cut(s) | 427, 583 |
| PleI | GAGTC | 3 cut(s) | 216, 231, 483 |
| PpsI | GAGTC | 3 cut(s) | 216, 231, 483 |
| PpuMI | RGGWCCY | 1 cut(s) | 482 |
| Psp5II | RGGWCCY | 1 cut(s) | 482 |
| PspN4I | GGNNCC | 3 cut(s) | 401, 483, 594 |
| PspPI | GGNCC | 1 cut(s) | 482 |
| PspPPI | RGGWCCY | 1 cut(s) | 482 |
| PsuI | RGATCY | 1 cut(s) | 399 |
| RsaI | GTAC | 2 cut(s) | 16, 173 |
| RsaNI | GTAC | 2 cut(s) | 15, 172 |
| SaqAI | TTAA | 4 cut(s) | 51, 126, 153, 230 |
| Sau3AI | GATC | 4 cut(s) | 144, 320, 399, 552 |
| Sau96I | GGNCC | 1 cut(s) | 482 |
| SchI | GAGTC | 3 cut(s) | 216, 231, 483 |
| ScrFI | CCNGG | 1 cut(s) | 464 |
| SduI | GDGCHC | 1 cut(s) | 475 |
| SetI | ASST | 6 cut(s) | 20, 126, 378, 531, 535, 573 |
| SfcI | CTRYAG | 1 cut(s) | 19 |
| SinI | GGWCC | 1 cut(s) | 482 |
| Sse9I | AATT | 4 cut(s) | 74, 154, 368, 407 |
| SsiI | CCGC | 3 cut(s) | 80, 365, 420 |
| SspMI | CTAG | 1 cut(s) | 101 |
| StyD4I | CCNGG | 1 cut(s) | 462 |
| StyI | CCWWGG | 1 cut(s) | 292 |
| TaaI | ACNGT | 2 cut(s) | 192, 245 |
| TaqI | TCGA | 7 cut(s) | 70, 94, 319, 487, 520, 558, 598 |
| TasI | AATT | 4 cut(s) | 74, 154, 368, 407 |
| TatI | WGTACW | 1 cut(s) | 171 |
| TfiI | GAWTC | 2 cut(s) | 427, 583 |
| Tru1I | TTAA | 4 cut(s) | 51, 126, 153, 230 |
| Tru9I | TTAA | 4 cut(s) | 51, 126, 153, 230 |
| TspDTI | ATGAA | 3 cut(s) | 150, 201, 443 |
| TspGWI | ACGGA | 3 cut(s) | 137, 483, 526 |
| VpaK11BI | GGWCC | 1 cut(s) | 482 |
| XspI | CTAG | 1 cut(s) | 101 |