Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007517.1

Orthogroup ID

OG0002593

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 3729

Gene Structure 3729 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 851 bp

ggtcagctgctagttcttcaagtgcctctcctcctccatgggctaatggatcagcatcttcctcgcagttgttcccaaagaaggagatagatggggagagtcaaccattgctccagcaacagcatcagcagcaacagcaacagcaacaacaggagatggttccgtatcaagacagtttcatgcagagtagagctgaagctttgcaaaatgttgagtccaccattcatgagctgagtaatattttcaaccagctggcgacattggtttctgagcaaggggaagttgccatcaggattgatgagaacatggaagacacattggcaaatgtagagggtgcacaagggcaactgctcaagtatatgaatagcatatcatcaaataggtctccctttgcgcgagtcggagccgattcgatttttgcagagagtcgacgacgacgtgaaaatctgagtgttggaaggaacaaacagatgggcggtgcaccgcgccaagctcgaaaagcttctccggaagctcgtgattcaccacactgggtcgaggctagcggcgtcctcagcctgttgatcggcggcggagccagcgccaggtcgccggcgaacaaccgcttcatgtattgggtagttttgctggaaatggtggagcggttgtctgagatggaaaaggaggagcgtttgcctggtaattacttcaaggaggtgtggattaagaatgtgtttgaagcttgggagaagaagaatgataagatgaaggcagagttagaagagtacagacatgctgttgaacttgagcgcatctcgctctcccttgcaaaagggaatcttatggaggctgaagccggtgctttcgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0000149 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0006810 GO:0006888 GO:0006906 GO:0006996 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0016043 GO:0016050 GO:0016192 GO:0022406 GO:0031090 GO:0031201 GO:0031224 GO:0031984 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046907 GO:0048193 GO:0048278 GO:0048284 GO:0051179 GO:0051234 GO:0051640 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0071840 GO:0090174 GO:0098588 GO:0098791 GO:0098796 GO:0140056

KEGG Pathways

Metabolic & Signaling

ko04130 map04130

Pfam Domains

Protein Families

SNARE Syntaxin Syntaxin-5_N

Protein Analysis

282

Amino Acids

31.52

Weight (kDa)

5.35

Isoelectric Point (pI)

63.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SNARE	PF05739	94 - 128	3.9e-08	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002593)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G53200 AT1G53200
fragaria_vesca	FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060 FvH4_3g19060
malus_domestica	MD03G1237200.v1.1 MD10G1064700.v1.1
prunus_persica	Prupe.4G172200_v2.0.a1
pyrus_communis	pycom03g18310
rosa_chinensis	RchiOBHm_Chr5g0031851 RchiOBHm_Chr6g0312691
rosa_laevigata	RLG00000013275 RLG00000033353
rosa_multiflora	Rmu_sc0002188.1_g000001 Rmu_sc0007517.1_g000001 Rmu_sc0011639.1_g000001 Rmu_sc0012252.1_g000001
rosa_roxburghii	Rroxscaffold_1G00048420
rosa_rugosa	Rorug04G0355200 Rorug05G0128100 Rorug05G0128200 Rorug06G0398300 Rorug06G0398300 Rorug06G0398400 Rorug06G0398500
rosa_samantha	Rh5AG222300 Rh5BG222600 Rh5CG245700 Rh5DG227400 Rh6AG515800 Rh6BG527100 Rh6CG532000 Rh6DG518000
rosa_wichuraiana	Rw5G020260 Rw6G044820

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	642
AccI	GTMKAC	1 cut(s)	429
AccII	CGCG	2 cut(s)	396, 486
AccIII	TCCGGA	1 cut(s)	507
AciI	CCGC	7 cut(s)	476, 484, 545, 569, 572, 603, 642
AclWI	GGATC	1 cut(s)	57
AcuI	CTGAAG	2 cut(s)	215, 851
AcyI	GRCGYC	1 cut(s)	548
AfaI	GTAC	1 cut(s)	766
AfiI	CCNNNNNNNGG	2 cut(s)	81, 584
AgsI	TTSAA	5 cut(s)	20, 246, 690, 718, 781
AjiI	CACGTC	1 cut(s)	439
AjnI	CCWGG	2 cut(s)	583, 675
AluBI	AGCT	9 cut(s)	7, 193, 199, 231, 252, 493, 502, 514, 721
AluI	AGCT	9 cut(s)	7, 193, 199, 231, 252, 493, 502, 514, 721
Alw21I	GWGCWC	2 cut(s)	339, 483
Alw26I	GTCTC	1 cut(s)	389
Alw44I	GTGCAC	2 cut(s)	335, 479
AlwI	GGATC	1 cut(s)	57
Aor13HI	TCCGGA	1 cut(s)	507
ApaLI	GTGCAC	2 cut(s)	335, 479
ApeKI	GCWGC	2 cut(s)	7, 129
Asp700I	GAANNNNTTC	1 cut(s)	501
AspLEI	GCGC	4 cut(s)	396, 488, 583, 791
AsuHPI	GGTGA	1 cut(s)	515
AsuNHI	GCTAGC	1 cut(s)	541
BaeGI	GKGCMC	2 cut(s)	339, 483
BauI	CACGAG	1 cut(s)	515
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	2 cut(s)	339, 483
BbvCI	CCTCAGC	1 cut(s)	553
BbvI	GCAGC	1 cut(s)	141
BccI	CCATC	5 cut(s)	85, 150, 295, 465, 648
BcgI	CGANNNNNNTGC	2 cut(s)	44, 78
BciT130I	CCWGG	2 cut(s)	585, 677
BcoDI	GTCTC	1 cut(s)	389
BfaI	CTAG	2 cut(s)	11, 542
BfoI	RGCGCY	1 cut(s)	584
BisI	GCNGC	4 cut(s)	8, 130, 546, 570
BlsI	GCNGC	4 cut(s)	9, 131, 547, 571
Bme1390I	CCNGG	2 cut(s)	585, 677
BmgBI	CACGTC	1 cut(s)	439
BmiI	GGNNCC	3 cut(s)	161, 405, 576
BmrFI	CCNGG	2 cut(s)	585, 677
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	3 cut(s)	64, 132, 800
BmtI	GCTAGC	1 cut(s)	545
BmuI	ACTGGG	1 cut(s)	540
BpiI	GAAGAC	1 cut(s)	317
BplI	GAGNNNNNCTC	2 cut(s)	778, 810
BpmI	CTGGAG	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	553
BpuEI	CTTGAG	2 cut(s)	337, 805
BsaBI	GATNNNNATC	1 cut(s)	54
BsaHI	GRCGYC	1 cut(s)	548
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	1 cut(s)	507
BsaXI	ACNNNNNCTCC	4 cut(s)	95, 125, 631, 661
Bsc4I	CCNNNNNNNGG	2 cut(s)	81, 584
Bse118I	RCCGGY	2 cut(s)	591, 835
Bse1I	ACTGG	1 cut(s)	535
Bse3DI	GCAATG	1 cut(s)	106
Bse8I	GATNNNNATC	1 cut(s)	54
BseAI	TCCGGA	1 cut(s)	507
BseBI	CCWGG	2 cut(s)	585, 677
BseDI	CCNNGG	1 cut(s)	37
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	2 cut(s)	81, 584
BseMI	GCAATG	1 cut(s)	106
BseMII	CTCAG	5 cut(s)	223, 260, 439, 567, 641
BseNI	ACTGG	1 cut(s)	535
BseRI	GAGGAG	3 cut(s)	20, 23, 679
BseSI	GKGCMC	2 cut(s)	339, 483
BseXI	GCAGC	1 cut(s)	141
Bsh1236I	CGCG	2 cut(s)	396, 486
BsiHKAI	GWGCWC	2 cut(s)	339, 483
BsiSI	CCGG	3 cut(s)	508, 592, 836
BslI	CCNNNNNNNGG	2 cut(s)	81, 584
BsmAI	GTCTC	1 cut(s)	389
Bso31I	GGTCTC	1 cut(s)	389
Bsp1286I	GDGCHC	2 cut(s)	339, 483
Bsp13I	TCCGGA	1 cut(s)	507
Bsp143I	GATC	2 cut(s)	49, 563
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	7 cut(s)	476, 484, 545, 569, 572, 603, 642
BspCNI	CTCAG	5 cut(s)	224, 261, 440, 566, 642
BspEI	TCCGGA	1 cut(s)	507
BspFNI	CGCG	2 cut(s)	396, 486
BspHI	TCATGA	1 cut(s)	225
BspLI	GGNNCC	3 cut(s)	161, 405, 576
BspOI	GCTAGC	1 cut(s)	545
BspPI	GGATC	1 cut(s)	57
BspTNI	GGTCTC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	642
BsrDI	GCAATG	1 cut(s)	106
BsrFI	RCCGGY	2 cut(s)	591, 835
BsrI	ACTGG	1 cut(s)	535
BssAI	RCCGGY	2 cut(s)	591, 835
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	2 cut(s)	49, 563
BssNI	GRCGYC	1 cut(s)	548
BssSI	CACGAG	1 cut(s)	515
BssT1I	CCWWGG	1 cut(s)	37
Bst2BI	CACGAG	1 cut(s)	515
Bst2UI	CCWGG	2 cut(s)	585, 677
Bst4CI	ACNGT	1 cut(s)	175
Bst6I	CTCTTC	1 cut(s)	755
BstACI	GRCGYC	1 cut(s)	548
BstC8I	GCNNGC	4 cut(s)	254, 543, 579, 593
BstDEI	CTNAG	5 cut(s)	232, 269, 448, 553, 650
BstDSI	CCRYGG	1 cut(s)	37
BstFNI	CGCG	2 cut(s)	396, 486
BstH2I	RGCGCY	1 cut(s)	584
BstHHI	GCGC	4 cut(s)	396, 488, 583, 791
BstKTI	GATC	2 cut(s)	52, 566
BstMAI	GTCTC	1 cut(s)	389
BstMBI	GATC	2 cut(s)	49, 563
BstMWI	GCNNNNNNNGC	6 cut(s)	129, 135, 499, 554, 578, 795
BstNI	CCWGG	2 cut(s)	585, 677
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	2 cut(s)	583, 675
BstSLI	GKGCMC	2 cut(s)	339, 483
BstUI	CGCG	2 cut(s)	396, 486
BstV1I	GCAGC	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	37
BtrI	CACGTC	1 cut(s)	439
BtsIMutI	CAGTG	1 cut(s)	528
Cac8I	GCNNGC	4 cut(s)	254, 543, 579, 593
CciI	TCATGA	1 cut(s)	225
CfoI	GCGC	4 cut(s)	396, 488, 583, 791
Cfr10I	RCCGGY	2 cut(s)	591, 835
CseI	GACGC	1 cut(s)	537
Csp6I	GTAC	1 cut(s)	765
CviAII	CATG	6 cut(s)	38, 180, 226, 306, 609, 772
CviQI	GTAC	1 cut(s)	765
DdeI	CTNAG	5 cut(s)	232, 269, 448, 553, 650
DpnI	GATC	2 cut(s)	51, 565
DpnII	GATC	2 cut(s)	49, 563
Eam1104I	CTCTTC	1 cut(s)	755
EarI	CTCTTC	1 cut(s)	755
EciI	GGCGGA	1 cut(s)	587
Eco130I	CCWWGG	1 cut(s)	37
Eco31I	GGTCTC	1 cut(s)	389
Eco57I	CTGAAG	2 cut(s)	215, 851
EcoRII	CCWGG	2 cut(s)	583, 675
EcoT14I	CCWWGG	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	6 cut(s)	41, 183, 229, 309, 612, 775
FalI	AAGNNNNNCTT	2 cut(s)	803, 835
FatI	CATG	6 cut(s)	37, 179, 225, 305, 608, 771
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	4 cut(s)	8, 130, 546, 570
Fsp4HI	GCNGC	4 cut(s)	8, 130, 546, 570
FspBI	CTAG	2 cut(s)	11, 542
GlaI	GCGC	4 cut(s)	395, 487, 582, 790
GluI	GCNGC	4 cut(s)	8, 130, 546, 570
GsuI	CTGGAG	1 cut(s)	97
HaeII	RGCGCY	1 cut(s)	584
HapII	CCGG	3 cut(s)	508, 592, 836
HgaI	GACGC	1 cut(s)	537
HhaI	GCGC	4 cut(s)	396, 488, 583, 791
Hin1I	GRCGYC	1 cut(s)	548
Hin1II	CATG	6 cut(s)	41, 183, 229, 309, 612, 775
Hin6I	GCGC	4 cut(s)	394, 486, 581, 789
HinP1I	GCGC	4 cut(s)	394, 486, 581, 789
HincII	GTYRAC	2 cut(s)	103, 430
HindII	GTYRAC	2 cut(s)	103, 430
HindIII	AAGCTT	3 cut(s)	197, 500, 719
HinfI	GANTC	7 cut(s)	99, 214, 398, 409, 426, 520, 816
HpaII	CCGG	3 cut(s)	508, 592, 836
HphI	GGTGA	1 cut(s)	515
Hpy166II	GTNNAC	5 cut(s)	103, 218, 337, 430, 481
Hpy188I	TCNGA	4 cut(s)	270, 403, 449, 651
Hpy188III	TCNNGA	5 cut(s)	169, 226, 291, 508, 517
Hpy8I	GTNNAC	5 cut(s)	103, 218, 337, 430, 481
Hpy99I	CGWCG	3 cut(s)	434, 437, 440
HpyAV	CCTTC	3 cut(s)	75, 452, 741
HpyCH4III	ACNGT	1 cut(s)	175
HpyCH4IV	ACGT	1 cut(s)	438
HpyCH4V	TGCA	6 cut(s)	183, 204, 337, 421, 481, 808
HpyF10VI	GCNNNNNNNGC	6 cut(s)	129, 135, 499, 554, 578, 795
HpyF3I	CTNAG	5 cut(s)	232, 269, 448, 553, 650
HpySE526I	ACGT	1 cut(s)	438
Hsp92I	GRCGYC	1 cut(s)	548
Hsp92II	CATG	6 cut(s)	41, 183, 229, 309, 612, 775
HspAI	GCGC	4 cut(s)	394, 486, 581, 789
Kpn2I	TCCGGA	1 cut(s)	507
KroI	GCCGGC	1 cut(s)	591
KroNI	GCCGGC	1 cut(s)	593
Kzo9I	GATC	2 cut(s)	49, 563
LmnI	GCTCC	5 cut(s)	116, 403, 574, 639, 666
Lsp1109I	GCAGC	1 cut(s)	141
LweI	GCATC	3 cut(s)	64, 132, 800
MaeI	CTAG	2 cut(s)	11, 542
MaeII	ACGT	1 cut(s)	438
MalI	GATC	2 cut(s)	51, 565
MbiI	CCGCTC	1 cut(s)	642
MboI	GATC	2 cut(s)	49, 563
MboII	GAAGA	6 cut(s)	8, 50, 322, 741, 744, 772
MhlI	GDGCHC	2 cut(s)	339, 483
MluCI	AATT	1 cut(s)	681
MlyI	GAGTC	4 cut(s)	108, 223, 407, 435
MmeI	TCCRAC	2 cut(s)	381, 435
MreI	CGCCGGCG	1 cut(s)	591
MroI	TCCGGA	1 cut(s)	507
MroNI	GCCGGC	1 cut(s)	591
MroXI	GAANNNNTTC	1 cut(s)	501
MseI	TTAA	1 cut(s)	704
MspA1I	CMGCKG	2 cut(s)	7, 252
MspI	CCGG	3 cut(s)	508, 592, 836
MspR9I	CCNGG	2 cut(s)	585, 677
MvaI	CCWGG	2 cut(s)	585, 677
MvnI	CGCG	2 cut(s)	396, 486
MwoI	GCNNNNNNNGC	6 cut(s)	129, 135, 499, 554, 578, 795
NaeI	GCCGGC	1 cut(s)	593
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	2 cut(s)	49, 563
NgoMIV	GCCGGC	1 cut(s)	591
NheI	GCTAGC	1 cut(s)	541
NlaIII	CATG	6 cut(s)	41, 183, 229, 309, 612, 775
NlaIV	GGNNCC	3 cut(s)	161, 405, 576
NspI	RCATGY	1 cut(s)	775
PagI	TCATGA	1 cut(s)	225
PcsI	WCGNNNNNNNCGW	1 cut(s)	435
PdiI	GCCGGC	1 cut(s)	593
PdmI	GAANNNNTTC	1 cut(s)	501
PfeI	GAWTC	3 cut(s)	409, 520, 816
PkrI	GCNGC	4 cut(s)	9, 131, 547, 571
PleI	GAGTC	4 cut(s)	107, 222, 406, 434
PpsI	GAGTC	4 cut(s)	107, 222, 406, 434
Psp6I	CCWGG	2 cut(s)	583, 675
PspGI	CCWGG	2 cut(s)	583, 675
PspN4I	GGNNCC	3 cut(s)	161, 405, 576
PvuII	CAGCTG	2 cut(s)	7, 252
RsaI	GTAC	1 cut(s)	766
RsaNI	GTAC	1 cut(s)	765
SalI	GTCGAC	1 cut(s)	428
SaqAI	TTAA	1 cut(s)	704
SatI	GCNGC	4 cut(s)	8, 130, 546, 570
Sau3AI	GATC	2 cut(s)	49, 563
SchI	GAGTC	4 cut(s)	108, 223, 407, 435
ScrFI	CCNGG	2 cut(s)	585, 677
SduI	GDGCHC	2 cut(s)	339, 483
SfaNI	GCATC	3 cut(s)	64, 132, 800
SgrAI	CRCCGGYG	1 cut(s)	591
SmlI	CTYRAG	2 cut(s)	352, 784
SmoI	CTYRAG	2 cut(s)	352, 784
Sse9I	AATT	1 cut(s)	681
SsiI	CCGC	7 cut(s)	476, 484, 545, 569, 572, 603, 642
SspI	AATATT	1 cut(s)	240
SspMI	CTAG	2 cut(s)	11, 542
StyD4I	CCNGG	2 cut(s)	583, 675
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	175
TaiI	ACGT	1 cut(s)	441
TaqI	TCGA	4 cut(s)	412, 429, 495, 536
TasI	AATT	1 cut(s)	681
TatI	WGTACW	1 cut(s)	764
TauI	GCSGC	2 cut(s)	548, 572
TfiI	GAWTC	3 cut(s)	409, 520, 816
Tru1I	TTAA	1 cut(s)	704
Tru9I	TTAA	1 cut(s)	704
TscAI	CASTG	1 cut(s)	535
TseI	GCWGC	2 cut(s)	7, 129
TspDTI	ATGAA	5 cut(s)	168, 214, 376, 597, 760
TspGWI	ACGGA	1 cut(s)	152
TspRI	CASTG	1 cut(s)	535
VneI	GTGCAC	2 cut(s)	335, 479
XceI	RCATGY	1 cut(s)	775
XmiI	GTMKAC	1 cut(s)	429
XmnI	GAANNNNTTC	1 cut(s)	501
XspI	CTAG	2 cut(s)	11, 542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.