Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011919.1

Orthogroup ID

OG0005114

Physical Location & Seq

Genomic Coordinates Reverse (-)

11318 .. 12684

Gene Structure 1367 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011919.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgcatacacacagacggacacagttacatgcagaaagtgggaaaggtcaatttgaggtggttctagggcacacagcttgccagcatgctgctgacaacttgatttatacccgtgaagttattagggccattgcaaggaaacacggattgttggcaacctttgtcccaaagtatgcgctagatgagattggctctggagcccatgtacatctcagtttgtggcagaatggcacaaatgtattcatggcatctggtggatcctctcagcatggaatgtccaaggttggggaggaatttatggcaggggttttatatcatctcccagcaattttggcatttacagctccaattccaaatagttacgaccggatacaacctaatacttggagtggagcatacaagtgctggggaaaagaaaacagggaagctccattaagaactgcatgcccacctggaattcaagctggtctggtgagcaactttgagatcaagtcatttgatgggtgtgcaaatccacacttgggcttggctgcaatactagctgctggcattgatggtcttaggagacatctttgtctccctgaacctattggtaagactacataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

201

Amino Acids

21.74

Weight (kDa)

8.64

Isoelectric Point (pI)

41.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53180
fragaria_vesca	FvH4_6g16930 FvH4_6g16930 FvH4_6g16930
malus_domestica	MD00G1214800.v1.1 MD13G1277900.v1.1
prunus_persica	Prupe.7G124800_v2.0.a1 Prupe.7G124800_v2.0.a1
pyrus_communis	pycom04g08210
rosa_chinensis	RchiOBHm_Chr3g0470971 RchiOBHm_Chr5g0018301
rosa_laevigata	RLG00000024228
rosa_multiflora	Rmu_sc0005264.1_g000001 Rmu_sc0011919.1_g000005
rosa_roxburghii	Rroxscaffold_6G00410370
rosa_rugosa	Rorug03G0114300 Rorug03G0114300 Rorug03G0114400 Rorug05G0041200 Rorug05G0041200
rosa_samantha	Rh3AG164000 Rh3BG189600 Rh3CG179500 Rh3DG186600 Rh5AG134300 Rh5BG133100 Rh5CG144800 Rh5DG134500
rosa_wichuraiana	Rw3G015430 Rw5G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	573
AclWI	GGATC	2 cut(s)	252, 265
AcsI	RAATTY	2 cut(s)	293, 456
AfaI	GTAC	1 cut(s)	207
AfiI	CCNNNNNNNGG	3 cut(s)	135, 285, 521
AgsI	TTSAA	1 cut(s)	461
AjnI	CCWGG	1 cut(s)	451
AluBI	AGCT	5 cut(s)	77, 344, 428, 464, 542
AluI	AGCT	5 cut(s)	77, 344, 428, 464, 542
Alw26I	GTCTC	2 cut(s)	559, 581
AlwI	GGATC	2 cut(s)	252, 265
AoxI	GGCC	1 cut(s)	126
ApeKI	GCWGC	3 cut(s)	89, 530, 542
ApoI	RAATTY	2 cut(s)	293, 456
AspLEI	GCGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	126
AsuHPI	GGTGA	1 cut(s)	484
BaeGI	GKGCMC	1 cut(s)	72
BamHI	GGATCC	1 cut(s)	257
BanII	GRGCYC	1 cut(s)	202
BbvI	GCAGC	3 cut(s)	76, 517, 529
BccI	CCATC	2 cut(s)	494, 548
BciT130I	CCWGG	1 cut(s)	453
BciVI	GTATCC	1 cut(s)	363
BcoDI	GTCTC	2 cut(s)	559, 581
BfaI	CTAG	3 cut(s)	65, 179, 539
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	3 cut(s)	90, 531, 543
BlsI	GCNGC	3 cut(s)	91, 532, 544
Bme1390I	CCNGG	1 cut(s)	453
BmgT120I	GGNCC	1 cut(s)	126
BmiI	GGNNCC	2 cut(s)	199, 259
BmrFI	CCNGG	1 cut(s)	453
BmsI	GCATC	1 cut(s)	257
BplI	GAGNNNNNCTC	2 cut(s)	176, 208
BpmI	CTGGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	279
BsaWI	WCCGGW	1 cut(s)	366
BsaXI	ACNNNNNCTCC	2 cut(s)	189, 219
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 285, 521
Bse3DI	GCAATG	1 cut(s)	129
BseBI	CCWGG	1 cut(s)	453
BseDI	CCNNGG	1 cut(s)	279
BseLI	CCNNNNNNNGG	3 cut(s)	135, 285, 521
BseMI	GCAATG	1 cut(s)	129
BseMII	CTCAG	2 cut(s)	226, 278
BseSI	GKGCMC	1 cut(s)	72
BseXI	GCAGC	3 cut(s)	76, 517, 529
BseYI	CCCAGC	2 cut(s)	322, 405
Bsh1285I	CGRYCG	1 cut(s)	367
BshFI	GGCC	1 cut(s)	128
BsiEI	CGRYCG	1 cut(s)	367
BsiSI	CCGG	1 cut(s)	367
BslFI	GGGAC	1 cut(s)	149
BslI	CCNNNNNNNGG	3 cut(s)	135, 285, 521
BsmAI	GTCTC	2 cut(s)	559, 581
BsmFI	GGGAC	1 cut(s)	149
BsnI	GGCC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	72, 202
Bsp1407I	TGTACA	1 cut(s)	205
Bsp143I	GATC	2 cut(s)	257, 486
BspANI	GGCC	1 cut(s)	128
BspCNI	CTCAG	2 cut(s)	225, 277
BspLI	GGNNCC	2 cut(s)	199, 259
BspPI	GGATC	2 cut(s)	252, 265
BsrDI	GCAATG	1 cut(s)	129
BsrGI	TGTACA	1 cut(s)	205
BssECI	CCNNGG	1 cut(s)	279
BssMI	GATC	2 cut(s)	257, 486
BssT1I	CCWWGG	1 cut(s)	279
Bst2UI	CCWGG	1 cut(s)	453
Bst4CI	ACNGT	1 cut(s)	24
BstAUI	TGTACA	1 cut(s)	205
BstC8I	GCNNGC	5 cut(s)	79, 83, 87, 445, 547
BstDEI	CTNAG	3 cut(s)	212, 264, 560
BstHHI	GCGC	1 cut(s)	178
BstKTI	GATC	2 cut(s)	260, 489
BstMAI	GTCTC	2 cut(s)	559, 581
BstMBI	GATC	2 cut(s)	257, 486
BstMCI	CGRYCG	1 cut(s)	367
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 341, 539
BstNI	CCWGG	1 cut(s)	453
BstNSI	RCATGY	3 cut(s)	32, 89, 447
BstSCI	CCNGG	1 cut(s)	451
BstSLI	GKGCMC	1 cut(s)	72
BstV1I	GCAGC	3 cut(s)	76, 517, 529
BstX2I	RGATCY	1 cut(s)	257
BstYI	RGATCY	1 cut(s)	257
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	1 cut(s)	128
Cac8I	GCNNGC	5 cut(s)	79, 83, 87, 445, 547
CfoI	GCGC	1 cut(s)	178
Cfr13I	GGNCC	1 cut(s)	126
Csp6I	GTAC	1 cut(s)	206
CviAII	CATG	6 cut(s)	29, 86, 203, 244, 269, 444
CviQI	GTAC	1 cut(s)	206
DdeI	CTNAG	3 cut(s)	212, 264, 560
DpnI	GATC	2 cut(s)	259, 488
DpnII	GATC	2 cut(s)	257, 486
DrdI	GACNNNNNNGTC	1 cut(s)	573
DseDI	GACNNNNNNGTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	279
Eco24I	GRGCYC	1 cut(s)	202
EcoRI	GAATTC	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	451
EcoT14I	CCWWGG	1 cut(s)	279
EcoT22I	ATGCAT	1 cut(s)	6
EcoT38I	GRGCYC	1 cut(s)	202
ErhI	CCWWGG	1 cut(s)	279
FaeI	CATG	6 cut(s)	32, 89, 206, 247, 272, 447
FaqI	GGGAC	1 cut(s)	149
FatI	CATG	6 cut(s)	28, 85, 202, 243, 268, 443
Fnu4HI	GCNGC	3 cut(s)	90, 531, 543
FriOI	GRGCYC	1 cut(s)	202
Fsp4HI	GCNGC	3 cut(s)	90, 531, 543
FspBI	CTAG	3 cut(s)	65, 179, 539
GlaI	GCGC	1 cut(s)	177
GluI	GCNGC	3 cut(s)	90, 531, 543
GsaI	CCCAGC	2 cut(s)	326, 409
GsuI	CTGGAG	1 cut(s)	216
HaeIII	GGCC	1 cut(s)	128
HapII	CCGG	1 cut(s)	367
HhaI	GCGC	1 cut(s)	178
Hin1II	CATG	6 cut(s)	32, 89, 206, 247, 272, 447
Hin6I	GCGC	1 cut(s)	176
HinP1I	GCGC	1 cut(s)	176
HpaII	CCGG	1 cut(s)	367
HphI	GGTGA	1 cut(s)	484
Hpy188III	TCNNGA	1 cut(s)	195
HpyCH4III	ACNGT	1 cut(s)	24
HpyCH4V	TGCA	6 cut(s)	4, 32, 134, 443, 509, 533
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 341, 539
HpyF3I	CTNAG	3 cut(s)	212, 264, 560
Hsp92II	CATG	6 cut(s)	32, 89, 206, 247, 272, 447
HspAI	GCGC	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	257, 486
LmnI	GCTCC	4 cut(s)	197, 349, 392, 433
Lsp1109I	GCAGC	3 cut(s)	76, 517, 529
LweI	GCATC	1 cut(s)	257
MaeI	CTAG	3 cut(s)	65, 179, 539
MaeIII	GTNAC	2 cut(s)	24, 359
MalI	GATC	2 cut(s)	259, 488
MboI	GATC	2 cut(s)	257, 486
MflI	RGATCY	1 cut(s)	257
MhlI	GDGCHC	2 cut(s)	72, 202
MluCI	AATT	5 cut(s)	50, 293, 327, 348, 456
MnlI	CCTC	3 cut(s)	49, 271, 283
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	434
MslI	CAYNNNNRTG	1 cut(s)	400
MspI	CCGG	1 cut(s)	367
MspR9I	CCNGG	1 cut(s)	453
MvaI	CCWGG	1 cut(s)	453
MwoI	GCNNNNNNNGC	3 cut(s)	332, 341, 539
NdeII	GATC	2 cut(s)	257, 486
NlaIII	CATG	6 cut(s)	32, 89, 206, 247, 272, 447
NlaIV	GGNNCC	2 cut(s)	199, 259
NsiI	ATGCAT	1 cut(s)	6
NspI	RCATGY	3 cut(s)	32, 89, 447
PaeI	GCATGC	2 cut(s)	89, 447
PkrI	GCNGC	3 cut(s)	91, 532, 544
Psp6I	CCWGG	1 cut(s)	451
PspFI	CCCAGC	2 cut(s)	322, 405
PspGI	CCWGG	1 cut(s)	451
PspN4I	GGNNCC	2 cut(s)	199, 259
PspPI	GGNCC	1 cut(s)	126
PsuI	RGATCY	1 cut(s)	257
RsaI	GTAC	1 cut(s)	207
RsaNI	GTAC	1 cut(s)	206
RseI	CAYNNNNRTG	1 cut(s)	400
SaqAI	TTAA	1 cut(s)	434
SatI	GCNGC	3 cut(s)	90, 531, 543
Sau3AI	GATC	2 cut(s)	257, 486
Sau96I	GGNCC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	453
SduI	GDGCHC	2 cut(s)	72, 202
SfaNI	GCATC	1 cut(s)	257
SmiMI	CAYNNNNRTG	1 cut(s)	400
SphI	GCATGC	2 cut(s)	89, 447
Sse9I	AATT	5 cut(s)	50, 293, 327, 348, 456
SspMI	CTAG	3 cut(s)	65, 179, 539
StyD4I	CCNGG	1 cut(s)	451
StyI	CCWWGG	1 cut(s)	279
TaaI	ACNGT	1 cut(s)	24
TasI	AATT	5 cut(s)	50, 293, 327, 348, 456
TatI	WGTACW	1 cut(s)	205
Tru1I	TTAA	1 cut(s)	434
Tru9I	TTAA	1 cut(s)	434
TseI	GCWGC	3 cut(s)	89, 530, 542
TspDTI	ATGAA	1 cut(s)	232
TspGWI	ACGGA	2 cut(s)	31, 159
XapI	RAATTY	2 cut(s)	293, 456
XceI	RCATGY	3 cut(s)	32, 89, 447
XspI	CTAG	3 cut(s)	65, 179, 539
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.