Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005114

Physical Location & Seq

Genomic Coordinates Reverse (-)

15120067 .. 15125330

Gene Structure 5264 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG164000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1647 bp

ATGTTTCTTCTGTATGTACATGGCCATGCACATGCTTTTGCACTTATAAAAACGTTCGATGTAATTTATTTGCAGGTCATGTTCAGCACTGATGGATATGCATTTCCCGAAACTTTCTACTTAGGTGCAAAAAAAGCACGTGAAGTTGTCCTTTCAGTTCTATCTGATGCCTGTGCTGATGGTGATCTCTCAATTCCGGAAGCTATTGAGGCTGCTGAAGACATCTTTTCACAAAATGCAGTTCAGTTTTACAAGATTGATCGTGCTGTCAAATCTTTTGGTTCAGCCAATAGTGTATGCTCTAACTTTGCGAAGGTGAAGAGTAATGACTCGGAAAATCATGTCTCACTTGTTCGTGTTTTCTGGGCTGATGCATCAGGACAACAAAGATGTCGTGTTGTTCCTGCTAAGCGGTTCAATGACATCGTTACAAAAAATGGCATTGGTTTGACTTTTGCTTGTATGGGAATGACTTCTTTCACTGATGGTCCAGCTGATGAGACTAATTTGACTGGAGTGGGTGAGATCAGACTCATGCCTGATTTATCGACTAAGTGGAGAATTCCATGGGTAGAACAAGAGGAAATGGTTTTGGCCAACATGCATCTTAAACCAGGTGAAGCATGGGAATACTGCCCAAGAGAGGCCTTACGGAGGGTTTCAAAAATATTGAAAGATGAATTCAATTTGGTAATGAATGCAGGATTTGAAAATGAATTTTTTCTCTTGAAGAGTATACTAAGGGACGGGAAAGAAGAATGGGTACCATTTGACTCAACACCCTACTGTTCCCCATCATCATATGATGCTGCTTCCCCTTTGTTTCACGAAGTTCTTGCTGCTCTCCAGTCCTTGAATATTACTGTAGAACAGTTACATGCAGAAAGTGGGAAAGGTCAATTTGAGATGGCTCTAGGGCACACGGCTTGCCAGCATGCTGCTGACAACTTGATTTATACCCGTGAAGTTATTAGGGCCATTGCAAGGAAACACGGATTGTCGGCAACCTTTGTGCCAAAGTATGCGCTAGATGATATTGGCTCTGGAGCCCATGTACATCTCAGTTTGTGGCAGAATGGGAAAAATGTATTCATGGCATCTGGTGGATCCTCTCAGCATGGAATGTCCAAGGTTGGGGAGGAATTTATGGCAGGGGTTTTATATCATCTCCCTGCAATTTTGGCATTTACAGCTCCAATTCCAAATAGTTACGACCGGATACAACCTAATACTTGGAGTGGAGCATACAAGTGCTGGGGAAAAGAAAACAGGGAAGCTCCATTAAGAACTGCATGCCCACCTGGAATTCAAGCTGGTCTGGTGAGCAACTTTGAGATCAAGTCATTTGATGGGTGTGCAAATCCACACTTGGGCTTGGCTGCAATACTAGCTGCTGGCATTGATGGCCTTAGGGGGCATCTTTGTCTCCCTGAACCTATTGATACAAATCCTTCTAGCCTTGATGGAGAACTACAAAGGTTACCAACTTCACTTTTGGAGTCATTAGAAGCTTTAAAGAAAGATGATCTCTTCAAAGAGTTCATTGGAGAAAAGCTATTGGTTGCCATAAAGGGAGTCCGCAAGGCAGAATTTGACTACTACGAGAAGCACAAAGATGCATACAAGCAACTTATACACCGGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

548

Amino Acids

60.69

Weight (kDa)

5.86

Isoelectric Point (pI)

37.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Gln-synt_N_2	PF16952	108 - 190	2.1e-07	Glutamine synthetase N-terminal domain
Gln-synt_C	PF00120	211 - 540	2.7e-91	Glutamine synthetase, catalytic domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53180
fragaria_vesca	FvH4_6g16930 FvH4_6g16930 FvH4_6g16930
malus_domestica	MD00G1214800.v1.1 MD13G1277900.v1.1
prunus_persica	Prupe.7G124800_v2.0.a1 Prupe.7G124800_v2.0.a1
pyrus_communis	pycom04g08210
rosa_chinensis	RchiOBHm_Chr3g0470971 RchiOBHm_Chr5g0018301
rosa_laevigata	RLG00000024228
rosa_multiflora	Rmu_sc0005264.1_g000001 Rmu_sc0011919.1_g000005
rosa_roxburghii	Rroxscaffold_6G00410370
rosa_rugosa	Rorug03G0114300 Rorug03G0114300 Rorug03G0114400 Rorug05G0041200 Rorug05G0041200
rosa_samantha	Rh3AG164000 Rh3BG189600 Rh3CG179500 Rh3DG186600 Rh5AG134300 Rh5BG133100 Rh5CG144800 Rh5DG134500
rosa_wichuraiana	Rw3G015430 Rw5G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
Acc36I	ACCTGC	1 cut(s)	64
Acc65I	GGTACC	1 cut(s)	763
AccB1I	GGYRCC	1 cut(s)	763
AccI	GTMKAC	1 cut(s)	736
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	2 cut(s)	412, 1579
AclI	AACGTT	1 cut(s)	53
AclWI	GGATC	2 cut(s)	1101, 1114
AcoI	YGGCCR	2 cut(s)	22, 594
AcsI	RAATTY	6 cut(s)	561, 680, 716, 1142, 1305, 1589
AcuI	CTGAAG	1 cut(s)	237
AcvI	CACGTG	1 cut(s)	140
AfaI	GTAC	3 cut(s)	18, 765, 1056
AfiI	CCNNNNNNNGG	5 cut(s)	643, 654, 984, 1134, 1370
AgeI	ACCGGT	1 cut(s)	1638
AgsI	TTSAA	9 cut(s)	418, 663, 673, 685, 710, 730, 856, 1310, 1534
AjnI	CCWGG	2 cut(s)	613, 1300
AluBI	AGCT	8 cut(s)	203, 494, 1193, 1277, 1313, 1391, 1511, 1555
AluI	AGCT	8 cut(s)	203, 494, 1193, 1277, 1313, 1391, 1511, 1555
Alw26I	GTCTC	3 cut(s)	349, 494, 1430
AlwI	GGATC	2 cut(s)	1101, 1114
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	5 cut(s)	22, 594, 645, 975, 1405
ApeKI	GCWGC	6 cut(s)	212, 809, 839, 938, 1379, 1391
ApoI	RAATTY	6 cut(s)	561, 680, 716, 1142, 1305, 1589
AsiGI	ACCGGT	1 cut(s)	1638
Asp700I	GAANNNNTTC	2 cut(s)	472, 720
Asp718I	GGTACC	1 cut(s)	763
AspLEI	GCGC	1 cut(s)	1027
AspS9I	GGNCC	2 cut(s)	488, 975
AsuHPI	GGTGA	5 cut(s)	194, 328, 533, 629, 1333
AvaII	GGWCC	1 cut(s)	488
AxyI	CCTNAGG	1 cut(s)	1409
BaeGI	GKGCMC	1 cut(s)	921
BalI	TGGCCA	2 cut(s)	24, 596
BamHI	GGATCC	1 cut(s)	1106
BanI	GGYRCC	1 cut(s)	763
BanII	GRGCYC	1 cut(s)	1051
BarI	GAAGNNNNNNTAC	2 cut(s)	747, 779
BbrPI	CACGTG	1 cut(s)	140
BbsI	GAAGAC	1 cut(s)	225
BbvI	GCAGC	6 cut(s)	199, 796, 826, 925, 1366, 1378
BccI	CCATC	8 cut(s)	86, 173, 479, 802, 901, 1343, 1397, 1457
BceAI	ACGGC	1 cut(s)	939
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	2 cut(s)	615, 1302
BciVI	GTATCC	1 cut(s)	1212
BcoDI	GTCTC	3 cut(s)	349, 494, 1430
BfaI	CTAG	4 cut(s)	914, 1028, 1388, 1455
BfmI	CTRYAG	1 cut(s)	864
BfuAI	ACCTGC	1 cut(s)	64
BfuI	GTATCC	1 cut(s)	1212
BisI	GCNGC	6 cut(s)	213, 810, 840, 939, 1380, 1392
BlpI	GCTNAGC	1 cut(s)	408
BlsI	GCNGC	6 cut(s)	214, 811, 841, 940, 1381, 1393
Bme1390I	CCNGG	2 cut(s)	615, 1302
Bme18I	GGWCC	1 cut(s)	488
BmgT120I	GGNCC	2 cut(s)	488, 975
BmiI	GGNNCC	3 cut(s)	765, 1048, 1108
BmrFI	CCNGG	2 cut(s)	615, 1302
BmsI	GCATC	8 cut(s)	157, 361, 383, 613, 796, 1106, 1426, 1606
BpiI	GAAGAC	1 cut(s)	225
BpmI	CTGGAG	3 cut(s)	534, 830, 1065
Bpu1102I	GCTNAGC	1 cut(s)	408
BsaAI	YACGTR	1 cut(s)	140
BsaBI	GATNNNNATC	2 cut(s)	183, 1446
BsaJI	CCNNGG	2 cut(s)	566, 1128
BsaWI	WCCGGW	3 cut(s)	196, 1215, 1638
BsaXI	ACNNNNNCTCC	2 cut(s)	1038, 1068
Bsc4I	CCNNNNNNNGG	5 cut(s)	643, 654, 984, 1134, 1370
Bse118I	RCCGGY	1 cut(s)	1638
Bse1I	ACTGG	2 cut(s)	517, 847
Bse21I	CCTNAGG	1 cut(s)	1409
Bse3DI	GCAATG	1 cut(s)	978
Bse8I	GATNNNNATC	2 cut(s)	183, 1446
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	2 cut(s)	615, 1302
BseDI	CCNNGG	2 cut(s)	566, 1128
BseJI	GATNNNNATC	2 cut(s)	183, 1446
BseLI	CCNNNNNNNGG	5 cut(s)	643, 654, 984, 1134, 1370
BseMI	GCAATG	1 cut(s)	978
BseMII	CTCAG	2 cut(s)	1075, 1127
BseNI	ACTGG	2 cut(s)	517, 847
BseSI	GKGCMC	1 cut(s)	921
BseXI	GCAGC	6 cut(s)	199, 796, 826, 925, 1366, 1378
BseYI	CCCAGC	1 cut(s)	1254
Bsh1285I	CGRYCG	1 cut(s)	1216
BshFI	GGCC	5 cut(s)	24, 596, 647, 977, 1407
BshNI	GGYRCC	1 cut(s)	763
BshTI	ACCGGT	1 cut(s)	1638
BsiEI	CGRYCG	1 cut(s)	1216
BsiSI	CCGG	3 cut(s)	197, 1216, 1639
BslFI	GGGAC	1 cut(s)	758
BslI	CCNNNNNNNGG	5 cut(s)	643, 654, 984, 1134, 1370
BsmAI	GTCTC	3 cut(s)	349, 494, 1430
BsmFI	GGGAC	1 cut(s)	758
BsmI	GAATGC	1 cut(s)	703
BsnI	GGCC	5 cut(s)	24, 596, 647, 977, 1407
Bsp1286I	GDGCHC	2 cut(s)	921, 1051
Bsp13I	TCCGGA	1 cut(s)	196
Bsp1407I	TGTACA	2 cut(s)	16, 1054
Bsp143I	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
Bsp1720I	GCTNAGC	1 cut(s)	408
Bsp19I	CCATGG	1 cut(s)	566
BspACI	CCGC	2 cut(s)	412, 1579
BspANI	GGCC	5 cut(s)	24, 596, 647, 977, 1407
BspCNI	CTCAG	2 cut(s)	1074, 1126
BspEI	TCCGGA	1 cut(s)	196
BspLI	GGNNCC	3 cut(s)	765, 1048, 1108
BspMI	ACCTGC	1 cut(s)	64
BspPI	GGATC	2 cut(s)	1101, 1114
BspT107I	GGYRCC	1 cut(s)	763
BsrDI	GCAATG	1 cut(s)	978
BsrFI	RCCGGY	1 cut(s)	1638
BsrGI	TGTACA	2 cut(s)	16, 1054
BsrI	ACTGG	2 cut(s)	517, 847
BssAI	RCCGGY	1 cut(s)	1638
BssECI	CCNNGG	2 cut(s)	566, 1128
BssMI	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
BssNAI	GTATAC	1 cut(s)	737
BssT1I	CCWWGG	2 cut(s)	566, 1128
Bst1107I	GTATAC	1 cut(s)	737
Bst2UI	CCWGG	2 cut(s)	615, 1302
Bst4CI	ACNGT	3 cut(s)	788, 865, 873
Bst6I	CTCTTC	3 cut(s)	314, 725, 1535
BstAUI	TGTACA	2 cut(s)	16, 1054
BstBAI	YACGTR	1 cut(s)	140
BstC8I	GCNNGC	5 cut(s)	928, 932, 936, 1294, 1396
BstDEI	CTNAG	7 cut(s)	121, 408, 552, 740, 1061, 1113, 1409
BstDSI	CCRYGG	1 cut(s)	566
BstEII	GGTNACC	1 cut(s)	1479
BstENI	CCTNNNNNAGG	1 cut(s)	652
BstHHI	GCGC	1 cut(s)	1027
BstKTI	GATC	6 cut(s)	187, 262, 528, 1109, 1338, 1528
BstMAI	GTCTC	3 cut(s)	349, 494, 1430
BstMBI	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
BstMCI	CGRYCG	1 cut(s)	1216
BstMWI	GCNNNNNNNGC	6 cut(s)	134, 209, 1181, 1190, 1388, 1404
BstNI	CCWGG	2 cut(s)	615, 1302
BstNSI	RCATGY	5 cut(s)	35, 604, 881, 938, 1296
BstPI	GGTNACC	1 cut(s)	1479
BstSCI	CCNGG	2 cut(s)	613, 1300
BstSFI	CTRYAG	1 cut(s)	864
BstSLI	GKGCMC	1 cut(s)	921
BstV1I	GCAGC	6 cut(s)	199, 796, 826, 925, 1366, 1378
BstV2I	GAAGAC	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	1106
BstYI	RGATCY	1 cut(s)	1106
BstZ17I	GTATAC	1 cut(s)	737
Bsu36I	CCTNAGG	1 cut(s)	1409
BsuI	GTATCC	1 cut(s)	1212
BsuRI	GGCC	5 cut(s)	24, 596, 647, 977, 1407
BtgI	CCRYGG	1 cut(s)	566
BtsIMutI	CAGTG	2 cut(s)	87, 480
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	5 cut(s)	928, 932, 936, 1294, 1396
CfoI	GCGC	1 cut(s)	1027
Cfr10I	RCCGGY	1 cut(s)	1638
Cfr13I	GGNCC	2 cut(s)	488, 975
CsiI	ACCWGGT	1 cut(s)	613
Csp6I	GTAC	3 cut(s)	17, 764, 1055
CspAI	ACCGGT	1 cut(s)	1638
CviQI	GTAC	3 cut(s)	17, 764, 1055
DdeI	CTNAG	7 cut(s)	121, 408, 552, 740, 1061, 1113, 1409
DpnI	GATC	6 cut(s)	186, 261, 527, 1108, 1337, 1527
DpnII	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
DraI	TTTAAA	1 cut(s)	1515
EaeI	YGGCCR	2 cut(s)	22, 594
Eam1104I	CTCTTC	3 cut(s)	314, 725, 1535
EarI	CTCTTC	3 cut(s)	314, 725, 1535
Eco130I	CCWWGG	2 cut(s)	566, 1128
Eco147I	AGGCCT	1 cut(s)	647
Eco24I	GRGCYC	1 cut(s)	1051
Eco47I	GGWCC	1 cut(s)	488
Eco57I	CTGAAG	1 cut(s)	237
Eco72I	CACGTG	1 cut(s)	140
Eco81I	CCTNAGG	1 cut(s)	1409
Eco91I	GGTNACC	1 cut(s)	1479
EcoNI	CCTNNNNNAGG	1 cut(s)	652
EcoO65I	GGTNACC	1 cut(s)	1479
EcoRI	GAATTC	3 cut(s)	561, 680, 1305
EcoRII	CCWGG	2 cut(s)	613, 1300
EcoT14I	CCWWGG	2 cut(s)	566, 1128
EcoT22I	ATGCAT	4 cut(s)	103, 376, 606, 1621
EcoT38I	GRGCYC	1 cut(s)	1051
ErhI	CCWWGG	2 cut(s)	566, 1128
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FaqI	GGGAC	1 cut(s)	758
FauNDI	CATATG	1 cut(s)	802
FblI	GTMKAC	1 cut(s)	736
Fnu4HI	GCNGC	6 cut(s)	213, 810, 840, 939, 1380, 1392
FriOI	GRGCYC	1 cut(s)	1051
Fsp4HI	GCNGC	6 cut(s)	213, 810, 840, 939, 1380, 1392
FspBI	CTAG	4 cut(s)	914, 1028, 1388, 1455
GlaI	GCGC	1 cut(s)	1026
GluI	GCNGC	6 cut(s)	213, 810, 840, 939, 1380, 1392
GsaI	CCCAGC	1 cut(s)	1258
GsuI	CTGGAG	3 cut(s)	534, 830, 1065
HaeIII	GGCC	5 cut(s)	24, 596, 647, 977, 1407
HapII	CCGG	3 cut(s)	197, 1216, 1639
HhaI	GCGC	1 cut(s)	1027
Hin6I	GCGC	1 cut(s)	1025
HinP1I	GCGC	1 cut(s)	1025
HindIII	AAGCTT	1 cut(s)	1509
HinfI	GANTC	5 cut(s)	329, 531, 773, 1499, 1575
HpaII	CCGG	3 cut(s)	197, 1216, 1639
HphI	GGTGA	5 cut(s)	194, 328, 533, 629, 1333
Hpy166II	GTNNAC	1 cut(s)	737
Hpy188I	TCNGA	3 cut(s)	166, 334, 530
Hpy188III	TCNNGA	6 cut(s)	107, 197, 378, 727, 827, 1044
Hpy8I	GTNNAC	1 cut(s)	737
HpyAV	CCTTC	2 cut(s)	307, 1461
HpyCH4III	ACNGT	3 cut(s)	788, 865, 873
HpyCH4IV	ACGT	2 cut(s)	53, 139
HpyF10VI	GCNNNNNNNGC	6 cut(s)	134, 209, 1181, 1190, 1388, 1404
HpyF3I	CTNAG	7 cut(s)	121, 408, 552, 740, 1061, 1113, 1409
HpySE526I	ACGT	2 cut(s)	53, 139
HspAI	GCGC	1 cut(s)	1025
Kpn2I	TCCGGA	1 cut(s)	196
KpnI	GGTACC	1 cut(s)	767
Kzo9I	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
LmnI	GCTCC	4 cut(s)	1046, 1198, 1241, 1282
Lsp1109I	GCAGC	6 cut(s)	199, 796, 826, 925, 1366, 1378
LweI	GCATC	8 cut(s)	157, 361, 383, 613, 796, 1106, 1426, 1606
MabI	ACCWGGT	1 cut(s)	613
MaeI	CTAG	4 cut(s)	914, 1028, 1388, 1455
MaeII	ACGT	2 cut(s)	53, 139
MaeIII	GTNAC	4 cut(s)	427, 873, 1208, 1479
MalI	GATC	6 cut(s)	186, 261, 527, 1108, 1337, 1527
MboI	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
MboII	GAAGA	5 cut(s)	230, 331, 742, 767, 1522
MflI	RGATCY	1 cut(s)	1106
MhlI	GDGCHC	2 cut(s)	921, 1051
MlsI	TGGCCA	2 cut(s)	24, 596
MluNI	TGGCCA	2 cut(s)	24, 596
MlyI	GAGTC	5 cut(s)	323, 525, 767, 1508, 1584
MnlI	CCTC	6 cut(s)	202, 574, 637, 648, 1120, 1132
Mox20I	TGGCCA	2 cut(s)	24, 596
Mph1103I	ATGCAT	4 cut(s)	103, 376, 606, 1621
MroI	TCCGGA	1 cut(s)	196
MroXI	GAANNNNTTC	2 cut(s)	472, 720
MscI	TGGCCA	2 cut(s)	24, 596
MseI	TTAA	3 cut(s)	609, 1283, 1514
MslI	CAYNNNNRTG	4 cut(s)	24, 30, 1249, 1614
Msp20I	TGGCCA	2 cut(s)	24, 596
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	3 cut(s)	197, 1216, 1639
MspR9I	CCNGG	2 cut(s)	615, 1302
Mva1269I	GAATGC	1 cut(s)	703
MvaI	CCWGG	2 cut(s)	615, 1302
MwoI	GCNNNNNNNGC	6 cut(s)	134, 209, 1181, 1190, 1388, 1404
NcoI	CCATGG	1 cut(s)	566
NdeI	CATATG	1 cut(s)	802
NdeII	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
NlaIV	GGNNCC	3 cut(s)	765, 1048, 1108
NsiI	ATGCAT	4 cut(s)	103, 376, 606, 1621
NspI	RCATGY	5 cut(s)	35, 604, 881, 938, 1296
PaeI	GCATGC	2 cut(s)	938, 1296
PceI	AGGCCT	1 cut(s)	647
PctI	GAATGC	1 cut(s)	703
PdmI	GAANNNNTTC	2 cut(s)	472, 720
PinAI	ACCGGT	1 cut(s)	1638
PkrI	GCNGC	6 cut(s)	214, 811, 841, 940, 1381, 1393
PleI	GAGTC	5 cut(s)	323, 525, 767, 1507, 1583
PmaCI	CACGTG	1 cut(s)	140
PmlI	CACGTG	1 cut(s)	140
PpsI	GAGTC	5 cut(s)	323, 525, 767, 1507, 1583
Ppu21I	YACGTR	1 cut(s)	140
PsiI	TTATAA	1 cut(s)	47
Psp1406I	AACGTT	1 cut(s)	53
Psp6I	CCWGG	2 cut(s)	613, 1300
PspCI	CACGTG	1 cut(s)	140
PspEI	GGTNACC	1 cut(s)	1479
PspFI	CCCAGC	1 cut(s)	1254
PspGI	CCWGG	2 cut(s)	613, 1300
PspN4I	GGNNCC	3 cut(s)	765, 1048, 1108
PspPI	GGNCC	2 cut(s)	488, 975
PsuI	RGATCY	1 cut(s)	1106
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	3 cut(s)	18, 765, 1056
RsaNI	GTAC	3 cut(s)	17, 764, 1055
RseI	CAYNNNNRTG	4 cut(s)	24, 30, 1249, 1614
SaqAI	TTAA	3 cut(s)	609, 1283, 1514
SatI	GCNGC	6 cut(s)	213, 810, 840, 939, 1380, 1392
Sau3AI	GATC	6 cut(s)	184, 259, 525, 1106, 1335, 1525
Sau96I	GGNCC	2 cut(s)	488, 975
SchI	GAGTC	5 cut(s)	323, 525, 767, 1508, 1584
ScrFI	CCNGG	2 cut(s)	615, 1302
SduI	GDGCHC	2 cut(s)	921, 1051
SexAI	ACCWGGT	1 cut(s)	613
SfaNI	GCATC	8 cut(s)	157, 361, 383, 613, 796, 1106, 1426, 1606
SfcI	CTRYAG	1 cut(s)	864
SinI	GGWCC	1 cut(s)	488
SmiMI	CAYNNNNRTG	4 cut(s)	24, 30, 1249, 1614
SphI	GCATGC	2 cut(s)	938, 1296
SseBI	AGGCCT	1 cut(s)	647
SsiI	CCGC	2 cut(s)	412, 1579
SspI	AATATT	2 cut(s)	669, 859
SspMI	CTAG	4 cut(s)	914, 1028, 1388, 1455
StuI	AGGCCT	1 cut(s)	647
StyD4I	CCNGG	2 cut(s)	613, 1300
StyI	CCWWGG	2 cut(s)	566, 1128
TaaI	ACNGT	3 cut(s)	788, 865, 873
TaiI	ACGT	2 cut(s)	56, 142
TaqI	TCGA	2 cut(s)	57, 548
TatI	WGTACW	2 cut(s)	16, 1054
Tru1I	TTAA	3 cut(s)	609, 1283, 1514
Tru9I	TTAA	3 cut(s)	609, 1283, 1514
TscAI	CASTG	2 cut(s)	94, 487
TseI	GCWGC	6 cut(s)	212, 809, 839, 938, 1379, 1391
TspDTI	ATGAA	5 cut(s)	693, 710, 729, 1081, 1531
TspGWI	ACGGA	2 cut(s)	667, 1008
TspRI	CASTG	2 cut(s)	94, 487
VpaK11BI	GGWCC	1 cut(s)	488
XagI	CCTNNNNNAGG	1 cut(s)	652
XapI	RAATTY	6 cut(s)	561, 680, 716, 1142, 1305, 1589
XceI	RCATGY	5 cut(s)	35, 604, 881, 938, 1296
XcmI	CCANNNNNNNNNTGG	1 cut(s)	621
XmiI	GTMKAC	1 cut(s)	736
XmnI	GAANNNNTTC	2 cut(s)	472, 720
XspI	CTAG	4 cut(s)	914, 1028, 1388, 1455
Zsp2I	ATGCAT	4 cut(s)	103, 376, 606, 1621

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.