Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005114

Physical Location & Seq

Genomic Coordinates Forward (+)

9307044 .. 9308236

Gene Structure 1193 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0114400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGAAACAACATAAACTTTTTTACACGCAACATTTTCTTGTTAAGGTAGAGGTTATCGAAGCTACTGAAAAATACACTTCTACTGTTGCTTCTGAATATGTTGAAGAGCGGGTTGATGAATACTACGATGAAGAGATCATATGCGAAGAAGGCAGTGATAAGCTTACTGAAGTGCTAGTAGATGGCTGCTTCATATTGGAACTTTTCCTCAGGGTAAGCCACTTGTCCACGACTATGAGTTCAGATGACCACAAATCTGATCCATTAATAAACAATGCTTGGATGATCAGAGCTCTTTGGCACGATCTAGCATTGCTTGAAAACCAAATCCCCTTCTTTGTCCTTGAAAATTTATATGACATTATCAAGCCTTCTCTAATGGAAAGGAGCAACGGCAAAGCACCAGTGTCGGTCAGTAGTCTTGCTTTAAATTTCTTTAAGCCTATGCTGAGCCAAAACTCAAATATAGCGGAGCATTCGTACCCGGACTGCAAACATTTGCTTGATCTCTTGCACAAATCCTCCCTGCTCGCAGTTTCAGGAGATACTGCCTTCACAGCCTATGACTCCGGAATTGAGCTTCGTAAAGAGTCAGAGGACTCTCTGGTGAAGATAACCGCCACAAGCCACAGCCAGCTGATCATCAACATCCCACCGGTGTTCATTGACGAGGAAAGGGATTCACTCTTCAGGAACCTGATTGCCTACGAGCAAAGCAGTATCAAAATTAGTCATCATGTTACACCTTATGTTTTCCTCATGAAAAGTCTTATCCGTTCTCCACGAGATGTCAAGCTTCTTAAGAAAAAAGGCATCATATCTCAGTATTGGATCGACGACCAAGAATATTCAACTTACTTCAGAAGTCTTCTAGATGAAGTTTTTCCCACGGACTTCTATTTCGGTTCTTTCTGTGGCAAAGTGGATGCCTACGCGAATAAGTTCTGGTTTCGTAGAAAGATGAGCGCTCTTTATCGCACTTATTTCTCAACAGCATGGAGTATGACATCATTCATTGCTGCCATTTGCCTTTTCATTCTCACGGTCTTACAAACATACTTCACCATCAACCCAGCTCGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000905 GO:0001896 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0008219 GO:0009058 GO:0009403 GO:0009404 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010720 GO:0010913 GO:0010914 GO:0012501 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019954 GO:0022414 GO:0030154 GO:0030436 GO:0030582 GO:0030584 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032501 GO:0032502 GO:0034305 GO:0043385 GO:0043386 GO:0043455 GO:0043934 GO:0043937 GO:0043938 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045460 GO:0045461 GO:0045595 GO:0045597 GO:0046483 GO:0048315 GO:0048468 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0060284 GO:0061458 GO:0061794 GO:0065007 GO:0071704 GO:0075259 GO:0075306 GO:0075307 GO:1900376 GO:1900378 GO:1901360 GO:1901362 GO:1901376 GO:1901378 GO:1901576 GO:1903664 GO:1903666

KEGG Pathways

Metabolic & Signaling

ko00220 ko00250 ko00630 ko00910 ko01100 ko01120 ko01230 ko02020 ko04217 ko04724 ko04727 map00220 map00250 map00630 map00910 map01100 map01120 map01230 map02020 map04217 map04724 map04727

Pfam Domains

Protein Families

Amidohydro_2 Gln-synt_C Gln-synt_N_2

Protein Analysis

360

Amino Acids

41.67

Weight (kDa)

5.5

Isoelectric Point (pI)

46.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF247	PF03140	1 - 347	1.2e-71	Plant protein of unknown function

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0005114)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G53180
fragaria_vesca	FvH4_6g16930 FvH4_6g16930 FvH4_6g16930
malus_domestica	MD00G1214800.v1.1 MD13G1277900.v1.1
prunus_persica	Prupe.7G124800_v2.0.a1 Prupe.7G124800_v2.0.a1
pyrus_communis	pycom04g08210
rosa_chinensis	RchiOBHm_Chr3g0470971 RchiOBHm_Chr5g0018301
rosa_laevigata	RLG00000024228
rosa_multiflora	Rmu_sc0005264.1_g000001 Rmu_sc0011919.1_g000005
rosa_roxburghii	Rroxscaffold_6G00410370
rosa_rugosa	Rorug03G0114300 Rorug03G0114300 Rorug03G0114400 Rorug05G0041200 Rorug05G0041200
rosa_samantha	Rh3AG164000 Rh3BG189600 Rh3CG179500 Rh3DG186600 Rh5AG134300 Rh5BG133100 Rh5CG144800 Rh5DG134500
rosa_wichuraiana	Rw3G015430 Rw5G011740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	109
AccII	CGCG	1 cut(s)	935
AccIII	TCCGGA	1 cut(s)	569
AciI	CCGC	3 cut(s)	109, 470, 618
AclWI	GGATC	2 cut(s)	254, 839
AcsI	RAATTY	2 cut(s)	349, 430
AcuI	CTGAAG	3 cut(s)	189, 673, 844
AfaI	GTAC	1 cut(s)	482
AfeI	AGCGCT	1 cut(s)	967
AflII	CTTAAG	1 cut(s)	800
AgeI	ACCGGT	1 cut(s)	655
AgsI	TTSAA	4 cut(s)	104, 320, 347, 852
AluBI	AGCT	7 cut(s)	62, 163, 293, 580, 637, 796, 1076
AluI	AGCT	7 cut(s)	62, 163, 293, 580, 637, 796, 1076
Alw21I	GWGCWC	1 cut(s)	295
AlwI	GGATC	2 cut(s)	254, 839
Aor13HI	TCCGGA	1 cut(s)	569
Aor51HI	AGCGCT	1 cut(s)	967
ApeKI	GCWGC	2 cut(s)	186, 1019
ApoI	RAATTY	2 cut(s)	349, 430
ArsI	GACNNNNNNTTYG	2 cut(s)	884, 916
AseI	ATTAAT	1 cut(s)	266
AsiGI	ACCGGT	1 cut(s)	655
Asp700I	GAANNNNTTC	2 cut(s)	882, 941
AspLEI	GCGC	1 cut(s)	968
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	2 cut(s)	619, 1054
AxyI	CCTNAGG	1 cut(s)	209
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	783
BbsI	GAAGAC	1 cut(s)	860
Bbv12I	GWGCWC	1 cut(s)	295
BbvI	GCAGC	2 cut(s)	173, 1006
BccI	CCATC	2 cut(s)	176, 1073
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	390, 424
BclI	TGATCA	2 cut(s)	285, 639
BcnI	CCSGG	1 cut(s)	485
BfaI	CTAG	3 cut(s)	176, 308, 872
BfoI	RGCGCY	1 cut(s)	969
BfrI	CTTAAG	1 cut(s)	800
BisI	GCNGC	2 cut(s)	187, 1020
BlpI	GCTNAGC	1 cut(s)	449
BlsI	GCNGC	2 cut(s)	188, 1021
Bme1390I	CCNGG	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	695
BmrFI	CCNGG	1 cut(s)	485
BmsI	GCATC	2 cut(s)	822, 916
BpiI	GAAGAC	1 cut(s)	860
Bpu1102I	GCTNAGC	1 cut(s)	449
BpuMI	CCSGG	1 cut(s)	485
BsaJI	CCNNGG	1 cut(s)	888
BsaWI	WCCGGW	2 cut(s)	569, 655
BsaXI	ACNNNNNCTCC	4 cut(s)	464, 494, 506, 536
Bse118I	RCCGGY	1 cut(s)	655
Bse1I	ACTGG	1 cut(s)	404
Bse21I	CCTNAGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	311, 1014
BseAI	TCCGGA	1 cut(s)	569
BseDI	CCNNGG	1 cut(s)	888
BseGI	GGATG	3 cut(s)	288, 648, 931
BseMI	GCAATG	2 cut(s)	311, 1014
BseMII	CTCAG	3 cut(s)	223, 440, 836
BseNI	ACTGG	1 cut(s)	404
BseXI	GCAGC	2 cut(s)	173, 1006
BseYI	CCCAGC	1 cut(s)	1072
Bsh1236I	CGCG	1 cut(s)	935
BshTI	ACCGGT	1 cut(s)	655
BsiHKAI	GWGCWC	1 cut(s)	295
BsiSI	CCGG	3 cut(s)	485, 570, 656
BsmI	GAATGC	1 cut(s)	475
Bsp1286I	GDGCHC	1 cut(s)	295
Bsp13I	TCCGGA	1 cut(s)	569
Bsp143I	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
Bsp1720I	GCTNAGC	1 cut(s)	449
BspACI	CCGC	3 cut(s)	109, 470, 618
BspCNI	CTCAG	3 cut(s)	222, 441, 835
BspEI	TCCGGA	1 cut(s)	569
BspFNI	CGCG	1 cut(s)	935
BspHI	TCATGA	1 cut(s)	759
BspLI	GGNNCC	1 cut(s)	695
BspPI	GGATC	2 cut(s)	254, 839
BspQI	GCTCTTC	1 cut(s)	99
BspTI	CTTAAG	1 cut(s)	800
BsrBI	CCGCTC	1 cut(s)	109
BsrDI	GCAATG	2 cut(s)	311, 1014
BsrFI	RCCGGY	1 cut(s)	655
BsrI	ACTGG	1 cut(s)	404
BssAI	RCCGGY	1 cut(s)	655
BssECI	CCNNGG	1 cut(s)	888
BssMI	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
BssSI	CACGAG	1 cut(s)	783
Bst2BI	CACGAG	1 cut(s)	783
Bst4CI	ACNGT	2 cut(s)	85, 1045
Bst6I	CTCTTC	3 cut(s)	99, 126, 692
BstAFI	CTTAAG	1 cut(s)	800
BstC8I	GCNNGC	3 cut(s)	531, 635, 1078
BstDEI	CTNAG	3 cut(s)	209, 449, 822
BstDSI	CCRYGG	1 cut(s)	888
BstF5I	GGATG	3 cut(s)	288, 648, 931
BstFNI	CGCG	1 cut(s)	935
BstH2I	RGCGCY	1 cut(s)	969
BstHHI	GCGC	1 cut(s)	968
BstKTI	GATC	7 cut(s)	138, 262, 288, 307, 508, 642, 834
BstMBI	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
BstMWI	GCNNNNNNNGC	2 cut(s)	150, 557
BstSCI	CCNGG	1 cut(s)	483
BstUI	CGCG	1 cut(s)	935
BstV1I	GCAGC	2 cut(s)	173, 1006
BstV2I	GAAGAC	1 cut(s)	860
Bsu36I	CCTNAGG	1 cut(s)	209
BtgI	CCRYGG	1 cut(s)	888
BtsCI	GGATG	3 cut(s)	288, 648, 931
BtsI	GCAGTG	1 cut(s)	160
BtsIMutI	CAGTG	2 cut(s)	160, 411
Cac8I	GCNNGC	3 cut(s)	531, 635, 1078
CciI	TCATGA	1 cut(s)	759
CfoI	GCGC	1 cut(s)	968
Cfr10I	RCCGGY	1 cut(s)	655
Csp6I	GTAC	1 cut(s)	481
CspAI	ACCGGT	1 cut(s)	655
CviAII	CATG	3 cut(s)	737, 760, 996
CviQI	GTAC	1 cut(s)	481
DdeI	CTNAG	3 cut(s)	209, 449, 822
DpnI	GATC	7 cut(s)	137, 261, 287, 306, 507, 641, 833
DpnII	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
DraI	TTTAAA	1 cut(s)	429
Eam1104I	CTCTTC	3 cut(s)	99, 126, 692
EarI	CTCTTC	3 cut(s)	99, 126, 692
Ecl136II	GAGCTC	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	295
Eco47III	AGCGCT	1 cut(s)	967
Eco53kI	GAGCTC	1 cut(s)	293
Eco57I	CTGAAG	3 cut(s)	189, 673, 844
Eco81I	CCTNAGG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	293
EcoT38I	GRGCYC	1 cut(s)	295
FaeI	CATG	3 cut(s)	740, 763, 999
FatI	CATG	3 cut(s)	736, 759, 995
FauI	CCCGC	1 cut(s)	102
FauNDI	CATATG	1 cut(s)	140
FbaI	TGATCA	2 cut(s)	285, 639
Fnu4HI	GCNGC	2 cut(s)	187, 1020
FokI	GGATG	3 cut(s)	295, 635, 938
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	2 cut(s)	187, 1020
FspBI	CTAG	3 cut(s)	176, 308, 872
GlaI	GCGC	1 cut(s)	967
GluI	GCNGC	2 cut(s)	187, 1020
GsaI	CCCAGC	1 cut(s)	1076
HaeII	RGCGCY	1 cut(s)	969
HapII	CCGG	3 cut(s)	485, 570, 656
HhaI	GCGC	1 cut(s)	968
Hin1II	CATG	3 cut(s)	740, 763, 999
Hin6I	GCGC	1 cut(s)	966
HinP1I	GCGC	1 cut(s)	966
HindIII	AAGCTT	2 cut(s)	161, 794
HinfI	GANTC	4 cut(s)	566, 590, 599, 680
HpaII	CCGG	3 cut(s)	485, 570, 656
HphI	GGTGA	2 cut(s)	619, 1054
Hpy166II	GTNNAC	1 cut(s)	228
Hpy188I	TCNGA	6 cut(s)	94, 244, 259, 290, 595, 863
Hpy188III	TCNNGA	5 cut(s)	540, 570, 691, 760, 872
Hpy8I	GTNNAC	1 cut(s)	228
Hpy99I	CGWCG	1 cut(s)	839
HpyAV	CCTTC	4 cut(s)	143, 343, 381, 562
HpyCH4III	ACNGT	2 cut(s)	85, 1045
HpyCH4V	TGCA	2 cut(s)	492, 514
HpyF10VI	GCNNNNNNNGC	2 cut(s)	150, 557
HpyF3I	CTNAG	3 cut(s)	209, 449, 822
Hsp92II	CATG	3 cut(s)	740, 763, 999
HspAI	GCGC	1 cut(s)	966
Kpn2I	TCCGGA	1 cut(s)	569
Ksp22I	TGATCA	2 cut(s)	285, 639
Kzo9I	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
LguI	GCTCTTC	1 cut(s)	99
LmnI	GCTCC	2 cut(s)	387, 472
Lsp1109I	GCAGC	2 cut(s)	173, 1006
LweI	GCATC	2 cut(s)	822, 916
MaeI	CTAG	3 cut(s)	176, 308, 872
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	7 cut(s)	137, 261, 287, 306, 507, 641, 833
MbiI	CCGCTC	1 cut(s)	109
MboI	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
MboII	GAAGA	6 cut(s)	116, 143, 158, 622, 679, 860
MhlI	GDGCHC	1 cut(s)	295
MluCI	AATT	4 cut(s)	349, 430, 573, 726
MlyI	GAGTC	3 cut(s)	560, 593, 599
MnlI	CCTC	6 cut(s)	43, 218, 532, 589, 664, 767
MroI	TCCGGA	1 cut(s)	569
MroXI	GAANNNNTTC	2 cut(s)	882, 941
MseI	TTAA	5 cut(s)	42, 266, 428, 438, 801
MslI	CAYNNNNRTG	1 cut(s)	233
MspA1I	CMGCKG	1 cut(s)	637
MspCI	CTTAAG	1 cut(s)	800
MspI	CCGG	3 cut(s)	485, 570, 656
MspR9I	CCNGG	1 cut(s)	485
Mva1269I	GAATGC	1 cut(s)	475
MvnI	CGCG	1 cut(s)	935
MwoI	GCNNNNNNNGC	2 cut(s)	150, 557
NciI	CCSGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	140
NdeII	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
NlaIII	CATG	3 cut(s)	740, 763, 999
NlaIV	GGNNCC	1 cut(s)	695
PagI	TCATGA	1 cut(s)	759
PciSI	GCTCTTC	1 cut(s)	99
PctI	GAATGC	1 cut(s)	475
PdmI	GAANNNNTTC	2 cut(s)	882, 941
PfeI	GAWTC	1 cut(s)	680
PinAI	ACCGGT	1 cut(s)	655
PkrI	GCNGC	2 cut(s)	188, 1021
PleI	GAGTC	3 cut(s)	560, 593, 598
PpsI	GAGTC	3 cut(s)	560, 593, 598
PshBI	ATTAAT	1 cut(s)	266
Psp124BI	GAGCTC	1 cut(s)	295
PspFI	CCCAGC	1 cut(s)	1072
PspN4I	GGNNCC	1 cut(s)	695
PvuII	CAGCTG	1 cut(s)	637
RsaI	GTAC	1 cut(s)	482
RsaNI	GTAC	1 cut(s)	481
RseI	CAYNNNNRTG	1 cut(s)	233
SacI	GAGCTC	1 cut(s)	295
SapI	GCTCTTC	1 cut(s)	99
SaqAI	TTAA	5 cut(s)	42, 266, 428, 438, 801
SatI	GCNGC	2 cut(s)	187, 1020
Sau3AI	GATC	7 cut(s)	135, 259, 285, 304, 505, 639, 831
SchI	GAGTC	3 cut(s)	560, 593, 599
ScrFI	CCNGG	1 cut(s)	485
SduI	GDGCHC	1 cut(s)	295
SfaNI	GCATC	2 cut(s)	822, 916
SgrAI	CRCCGGYG	1 cut(s)	655
SmiMI	CAYNNNNRTG	1 cut(s)	233
SmlI	CTYRAG	1 cut(s)	800
SmoI	CTYRAG	1 cut(s)	800
Sse9I	AATT	4 cut(s)	349, 430, 573, 726
SsiI	CCGC	3 cut(s)	109, 470, 618
SspI	AATATT	1 cut(s)	848
SspMI	CTAG	3 cut(s)	176, 308, 872
SstI	GAGCTC	1 cut(s)	295
StyD4I	CCNGG	1 cut(s)	483
TaaI	ACNGT	2 cut(s)	85, 1045
TaqI	TCGA	2 cut(s)	57, 834
TaqII	GACCGA	1 cut(s)	400
TasI	AATT	4 cut(s)	349, 430, 573, 726
TfiI	GAWTC	1 cut(s)	680
Tru1I	TTAA	5 cut(s)	42, 266, 428, 438, 801
Tru9I	TTAA	5 cut(s)	42, 266, 428, 438, 801
TscAI	CASTG	2 cut(s)	160, 411
TseI	GCWGC	2 cut(s)	186, 1019
TspDTI	ATGAA	9 cut(s)	17, 132, 144, 181, 652, 776, 891, 1003, 1024
TspGWI	ACGGA	2 cut(s)	764, 905
TspRI	CASTG	2 cut(s)	160, 411
Vha464I	CTTAAG	1 cut(s)	800
VspI	ATTAAT	1 cut(s)	266
XapI	RAATTY	2 cut(s)	349, 430
XbaI	TCTAGA	1 cut(s)	871
XmnI	GAANNNNTTC	2 cut(s)	882, 941
XspI	CTAG	3 cut(s)	176, 308, 872

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.