Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0017075.1

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Forward (+)

151 .. 1544

Gene Structure 1394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0017075.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atgatggccagcaagattggactctacgactcgactcgttctccaactagtttcgggggatctcgagcctctggtcgtcgccgtcaaagacctctacgtgcagcagcagattcattccatattgaaaatgagtatggacccatggaatacgaaattggtgcaccaggtaaagcctacactgactgggcagctcaaatggttgtaggattaagcactagtttcccctggatcctgtgcaaacaagatgatgcccctgatcctgttgtaagtccgtctgactttcatctttcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

97

Amino Acids

10.64

Weight (kDa)

6.04

Isoelectric Point (pI)

68.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	4 cut(s)	67, 223, 236, 251
AcoI	YGGCCR	1 cut(s)	6
AgsI	TTSAA	1 cut(s)	125
AhlI	ACTAGT	2 cut(s)	47, 215
AjnI	CCWGG	2 cut(s)	163, 224
AjuI	GAANNNNNNNTTGG	2 cut(s)	138, 170
AluBI	AGCT	1 cut(s)	191
AluI	AGCT	1 cut(s)	191
Alw21I	GWGCWC	1 cut(s)	163
Alw44I	GTGCAC	1 cut(s)	159
AlwI	GGATC	4 cut(s)	67, 223, 236, 251
Ama87I	CYCGRG	1 cut(s)	63
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	159
ApeKI	GCWGC	3 cut(s)	101, 104, 188
AspS9I	GGNCC	1 cut(s)	137
AvaI	CYCGRG	1 cut(s)	63
AvaII	GGWCC	1 cut(s)	137
BaeGI	GKGCMC	1 cut(s)	163
BalI	TGGCCA	1 cut(s)	8
BamHI	GGATCC	1 cut(s)	228
Bbv12I	GWGCWC	1 cut(s)	163
BbvI	GCAGC	3 cut(s)	113, 116, 200
BceAI	ACGGC	1 cut(s)	66
BcgI	CGANNNNNNTGC	2 cut(s)	140, 174
BciT130I	CCWGG	2 cut(s)	165, 226
BcuI	ACTAGT	2 cut(s)	47, 215
BfaI	CTAG	2 cut(s)	48, 216
BisI	GCNGC	3 cut(s)	102, 105, 189
BlsI	GCNGC	3 cut(s)	103, 106, 190
Bme1390I	CCNGG	2 cut(s)	165, 226
Bme18I	GGWCC	1 cut(s)	137
BmeT110I	CYCGRG	1 cut(s)	63
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	2 cut(s)	139, 230
BmrFI	CCNGG	2 cut(s)	165, 226
BmrI	ACTGGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	238
BmuI	ACTGGG	1 cut(s)	193
BsaAI	YACGTR	1 cut(s)	98
BsaJI	CCNNGG	2 cut(s)	141, 224
BsaXI	ACNNNNNCTCC	2 cut(s)	25, 55
Bse1I	ACTGG	1 cut(s)	188
BseBI	CCWGG	2 cut(s)	165, 226
BseDI	CCNNGG	2 cut(s)	141, 224
BseNI	ACTGG	1 cut(s)	188
BseSI	GKGCMC	1 cut(s)	163
BseXI	GCAGC	3 cut(s)	113, 116, 200
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	8
BsiHKAI	GWGCWC	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	63
BsnI	GGCC	1 cut(s)	8
BsoBI	CYCGRG	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	59, 228, 256
Bsp19I	CCATGG	1 cut(s)	141
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	139, 230
BspPI	GGATC	4 cut(s)	67, 223, 236, 251
BsrI	ACTGG	1 cut(s)	188
BssECI	CCNNGG	2 cut(s)	141, 224
BssMI	GATC	3 cut(s)	59, 228, 256
BssT1I	CCWWGG	1 cut(s)	141
Bst2UI	CCWGG	2 cut(s)	165, 226
BstBAI	YACGTR	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	141
BstKTI	GATC	3 cut(s)	62, 231, 259
BstMBI	GATC	3 cut(s)	59, 228, 256
BstNI	CCWGG	2 cut(s)	165, 226
BstSCI	CCNGG	2 cut(s)	163, 224
BstSLI	GKGCMC	1 cut(s)	163
BstV1I	GCAGC	3 cut(s)	113, 116, 200
BstX2I	RGATCY	2 cut(s)	59, 228
BstYI	RGATCY	2 cut(s)	59, 228
BsuRI	GGCC	1 cut(s)	8
BtgI	CCRYGG	1 cut(s)	141
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	10
Cfr13I	GGNCC	1 cut(s)	137
CsiI	ACCWGGT	1 cut(s)	163
CviAII	CATG	1 cut(s)	142
CviJI	RGCY	4 cut(s)	8, 68, 173, 191
CviKI_1	RGCY	4 cut(s)	8, 68, 173, 191
DpnI	GATC	3 cut(s)	61, 230, 258
DpnII	GATC	3 cut(s)	59, 228, 256
EaeI	YGGCCR	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	141
Eco47I	GGWCC	1 cut(s)	137
Eco88I	CYCGRG	1 cut(s)	63
EcoRII	CCWGG	2 cut(s)	163, 224
EcoT14I	CCWWGG	1 cut(s)	141
ErhI	CCWWGG	1 cut(s)	141
FaeI	CATG	1 cut(s)	145
FaiI	YATR	3 cut(s)	120, 135, 143
FatI	CATG	1 cut(s)	141
Fnu4HI	GCNGC	3 cut(s)	102, 105, 189
Fsp4HI	GCNGC	3 cut(s)	102, 105, 189
FspBI	CTAG	2 cut(s)	48, 216
GluI	GCNGC	3 cut(s)	102, 105, 189
HaeIII	GGCC	1 cut(s)	8
Hin1II	CATG	1 cut(s)	145
HinfI	GANTC	4 cut(s)	21, 29, 34, 110
Hpy166II	GTNNAC	1 cut(s)	161
Hpy188I	TCNGA	1 cut(s)	277
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	161
Hpy99I	CGWCG	1 cut(s)	81
HpyCH4IV	ACGT	1 cut(s)	97
HpyCH4V	TGCA	3 cut(s)	101, 161, 237
HpySE526I	ACGT	1 cut(s)	97
Hsp92II	CATG	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	59, 228, 256
Lsp1109I	GCAGC	3 cut(s)	113, 116, 200
LweI	GCATC	1 cut(s)	238
MabI	ACCWGGT	1 cut(s)	163
MaeI	CTAG	2 cut(s)	48, 216
MaeII	ACGT	1 cut(s)	97
MalI	GATC	3 cut(s)	61, 230, 258
MboI	GATC	3 cut(s)	59, 228, 256
MflI	RGATCY	2 cut(s)	59, 228
MhlI	GDGCHC	1 cut(s)	163
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	1 cut(s)	153
MluNI	TGGCCA	1 cut(s)	8
MlyI	GAGTC	3 cut(s)	15, 23, 28
MmeI	TCCRAC	1 cut(s)	68
MnlI	CCTC	2 cut(s)	79, 102
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	2 cut(s)	209, 292
Msp20I	TGGCCA	1 cut(s)	8
MspR9I	CCNGG	2 cut(s)	165, 226
MvaI	CCWGG	2 cut(s)	165, 226
NcoI	CCATGG	1 cut(s)	141
NdeII	GATC	3 cut(s)	59, 228, 256
NlaIII	CATG	1 cut(s)	145
NlaIV	GGNNCC	2 cut(s)	139, 230
PaeR7I	CTCGAG	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	110
PkrI	GCNGC	3 cut(s)	103, 106, 190
PleI	GAGTC	3 cut(s)	15, 23, 28
PpsI	GAGTC	3 cut(s)	15, 23, 28
Ppu21I	YACGTR	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	163, 224
PspGI	CCWGG	2 cut(s)	163, 224
PspN4I	GGNNCC	2 cut(s)	139, 230
PspPI	GGNCC	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	59, 228
SaqAI	TTAA	2 cut(s)	209, 292
SatI	GCNGC	3 cut(s)	102, 105, 189
Sau3AI	GATC	3 cut(s)	59, 228, 256
Sau96I	GGNCC	1 cut(s)	137
SchI	GAGTC	3 cut(s)	15, 23, 28
ScrFI	CCNGG	2 cut(s)	165, 226
SduI	GDGCHC	1 cut(s)	163
SetI	ASST	4 cut(s)	94, 100, 169, 193
SexAI	ACCWGGT	1 cut(s)	163
SfaNI	GCATC	1 cut(s)	238
Sfr274I	CTCGAG	1 cut(s)	63
SinI	GGWCC	1 cut(s)	137
SlaI	CTCGAG	1 cut(s)	63
SmlI	CTYRAG	1 cut(s)	63
SmoI	CTYRAG	1 cut(s)	63
SpeI	ACTAGT	2 cut(s)	47, 215
Sse9I	AATT	1 cut(s)	153
SspMI	CTAG	2 cut(s)	48, 216
StyD4I	CCNGG	2 cut(s)	163, 224
StyI	CCWWGG	1 cut(s)	141
TaiI	ACGT	1 cut(s)	100
TaqI	TCGA	2 cut(s)	32, 64
TasI	AATT	1 cut(s)	153
TfiI	GAWTC	1 cut(s)	110
Tru1I	TTAA	2 cut(s)	209, 292
Tru9I	TTAA	2 cut(s)	209, 292
TscAI	CASTG	1 cut(s)	184
TseI	GCWGC	3 cut(s)	101, 104, 188
TspDTI	ATGAA	2 cut(s)	102, 272
TspGWI	ACGGA	1 cut(s)	261
TspRI	CASTG	1 cut(s)	184
VneI	GTGCAC	1 cut(s)	159
VpaK11BI	GGWCC	1 cut(s)	137
XhoI	CTCGAG	1 cut(s)	63
XspI	CTAG	2 cut(s)	48, 216

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.