Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Forward (+)

29468864 .. 29486818

Gene Structure 17955 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG289400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGACGGCGTAGTCGTCGGCAACACAGTCAAGATTGAAAATGAGTATGGACCCATAGAATACGAAATTGGTGCACCAGGTAAAGCCTACATTGACTGGGCAGCTCAAATGGTTGTGGGACTAAACACTAGTTTCCCCTGGGTCCTATGCAAACAAGATGATTCCCTTGATCCTGTTAGTGATGAATCTATTTATGAGCACGAGTGTGGAAACATGCCAGGATTTGCTGTCTACTATAGGTTTCCAGATAGCCAGCGGTCATCTTTCAATGCTGATAATGCAACGAATTTCTCAGATATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

100

Amino Acids

11.11

Weight (kDa)

4.05

Isoelectric Point (pI)

35.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	1 cut(s)	256
AclWI	GGATC	1 cut(s)	164
AcsI	RAATTY	1 cut(s)	286
AgsI	TTSAA	2 cut(s)	38, 268
AhlI	ACTAGT	1 cut(s)	128
AjnI	CCWGG	3 cut(s)	76, 137, 217
AjuI	GAANNNNNNNTTGG	2 cut(s)	51, 83
AleI	CACNNNNGTG	1 cut(s)	204
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
Alw21I	GWGCWC	2 cut(s)	76, 201
Alw44I	GTGCAC	1 cut(s)	72
AlwI	GGATC	1 cut(s)	164
ApaLI	GTGCAC	1 cut(s)	72
ApeKI	GCWGC	1 cut(s)	101
ApoI	RAATTY	1 cut(s)	286
AspS9I	GGNCC	2 cut(s)	50, 142
AvaII	GGWCC	2 cut(s)	50, 142
BaeGI	GKGCMC	1 cut(s)	76
BauI	CACGAG	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	76, 201
BbvI	GCAGC	1 cut(s)	113
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	3 cut(s)	78, 139, 219
BcuI	ACTAGT	1 cut(s)	128
BfaI	CTAG	1 cut(s)	129
BfmI	CTRYAG	1 cut(s)	235
BisI	GCNGC	1 cut(s)	102
BlsI	GCNGC	1 cut(s)	103
Bme1390I	CCNGG	3 cut(s)	78, 139, 219
Bme18I	GGWCC	2 cut(s)	50, 142
BmgT120I	GGNCC	2 cut(s)	50, 142
BmiI	GGNNCC	2 cut(s)	52, 143
BmrFI	CCNGG	3 cut(s)	78, 139, 219
BmrI	ACTGGG	1 cut(s)	106
BmuI	ACTGGG	1 cut(s)	106
BsaJI	CCNNGG	2 cut(s)	137, 138
Bse1I	ACTGG	1 cut(s)	101
BseBI	CCWGG	3 cut(s)	78, 139, 219
BseDI	CCNNGG	2 cut(s)	137, 138
BseNI	ACTGG	1 cut(s)	101
BseSI	GKGCMC	1 cut(s)	76
BseXI	GCAGC	1 cut(s)	113
BsiHKAI	GWGCWC	2 cut(s)	76, 201
BslFI	GGGAC	1 cut(s)	132
BsmFI	GGGAC	1 cut(s)	132
Bsp1286I	GDGCHC	2 cut(s)	76, 201
Bsp143I	GATC	1 cut(s)	169
BspACI	CCGC	1 cut(s)	256
BspLI	GGNNCC	2 cut(s)	52, 143
BspPI	GGATC	1 cut(s)	164
BsrI	ACTGG	1 cut(s)	101
BssECI	CCNNGG	2 cut(s)	137, 138
BssMI	GATC	1 cut(s)	169
BssSI	CACGAG	1 cut(s)	200
Bst2BI	CACGAG	1 cut(s)	200
Bst2UI	CCWGG	3 cut(s)	78, 139, 219
Bst4CI	ACNGT	1 cut(s)	28
BstC8I	GCNNGC	1 cut(s)	254
BstDEI	CTNAG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	172
BstMBI	GATC	1 cut(s)	169
BstMWI	GCNNNNNNNGC	1 cut(s)	278
BstNI	CCWGG	3 cut(s)	78, 139, 219
BstNSI	RCATGY	1 cut(s)	217
BstSCI	CCNGG	3 cut(s)	76, 137, 217
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	76
BstV1I	GCAGC	1 cut(s)	113
Cac8I	GCNNGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	50, 142
CsiI	ACCWGGT	1 cut(s)	76
CviAII	CATG	1 cut(s)	214
CviJI	RGCY	3 cut(s)	86, 104, 252
CviKI_1	RGCY	3 cut(s)	86, 104, 252
DdeI	CTNAG	1 cut(s)	292
DpnI	GATC	1 cut(s)	171
DpnII	GATC	1 cut(s)	169
DrdI	GACNNNNNNGTC	1 cut(s)	11
DseDI	GACNNNNNNGTC	1 cut(s)	11
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	50, 142
EcoO109I	RGGNCCY	1 cut(s)	142
EcoRII	CCWGG	3 cut(s)	76, 137, 217
EcoRV	GATATC	1 cut(s)	298
FaeI	CATG	1 cut(s)	217
FaiI	YATR	6 cut(s)	48, 56, 148, 195, 215, 237
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	1 cut(s)	213
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	1 cut(s)	102
Fsp4HI	GCNGC	1 cut(s)	102
FspBI	CTAG	1 cut(s)	129
GluI	GCNGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	217
HinfI	GANTC	2 cut(s)	161, 185
Hpy166II	GTNNAC	2 cut(s)	74, 232
Hpy188I	TCNGA	2 cut(s)	295, 302
Hpy188III	TCNNGA	2 cut(s)	31, 245
Hpy8I	GTNNAC	2 cut(s)	74, 232
Hpy99I	CGWCG	1 cut(s)	20
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	3 cut(s)	74, 150, 281
HpyF10VI	GCNNNNNNNGC	1 cut(s)	278
HpyF3I	CTNAG	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	169
Lsp1109I	GCAGC	1 cut(s)	113
MabI	ACCWGGT	1 cut(s)	76
MaeI	CTAG	1 cut(s)	129
MalI	GATC	1 cut(s)	171
MboI	GATC	1 cut(s)	169
MhlI	GDGCHC	2 cut(s)	76, 201
MluCI	AATT	2 cut(s)	66, 286
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	1 cut(s)	256
MspR9I	CCNGG	3 cut(s)	78, 139, 219
MvaI	CCWGG	3 cut(s)	78, 139, 219
MwoI	GCNNNNNNNGC	1 cut(s)	278
NdeII	GATC	1 cut(s)	169
NlaIII	CATG	1 cut(s)	217
NlaIV	GGNNCC	2 cut(s)	52, 143
NspI	RCATGY	1 cut(s)	217
OliI	CACNNNNGTG	1 cut(s)	204
PasI	CCCWGGG	1 cut(s)	138
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	161, 185
PkrI	GCNGC	1 cut(s)	103
PpuMI	RGGWCCY	1 cut(s)	142
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	3 cut(s)	76, 137, 217
PspGI	CCWGG	3 cut(s)	76, 137, 217
PspN4I	GGNNCC	2 cut(s)	52, 143
PspPI	GGNCC	2 cut(s)	50, 142
PspPPI	RGGWCCY	1 cut(s)	142
RseI	CAYNNNNRTG	1 cut(s)	204
SatI	GCNGC	1 cut(s)	102
Sau3AI	GATC	1 cut(s)	169
Sau96I	GGNCC	2 cut(s)	50, 142
ScrFI	CCNGG	3 cut(s)	78, 139, 219
SduI	GDGCHC	2 cut(s)	76, 201
SetI	ASST	3 cut(s)	82, 106, 242
SexAI	ACCWGGT	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	50, 142
SmiMI	CAYNNNNRTG	1 cut(s)	204
SpeI	ACTAGT	1 cut(s)	128
Sse9I	AATT	2 cut(s)	66, 286
SsiI	CCGC	1 cut(s)	256
SspMI	CTAG	1 cut(s)	129
StyD4I	CCNGG	3 cut(s)	76, 137, 217
TaaI	ACNGT	1 cut(s)	28
TasI	AATT	2 cut(s)	66, 286
TfiI	GAWTC	2 cut(s)	161, 185
TseI	GCWGC	1 cut(s)	101
TspDTI	ATGAA	1 cut(s)	198
VneI	GTGCAC	1 cut(s)	72
VpaK11BI	GGWCC	2 cut(s)	50, 142
XapI	RAATTY	1 cut(s)	286
XceI	RCATGY	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	1 cut(s)	129

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.