Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Forward (+)

35560605 .. 35561103

Gene Structure 499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG321300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 285 bp

ATGCTGGAGTGGAGGCTAAAGATTGCTTCCAGATTTATCTGGATTACAATATGGGTTAGCAGTATATCGTTTGATACATATGTTGATATTGCATCTGAGGGCACAGCTGATATTGAAAATGAGTATGGACCCATGGAATACGAAATTGGTGCACCAGGTAAAGCCTACACTGACTGGGCAGCTCAAATGGTTATGGGATTAAACACTAGTTTCCCCTGGATCCTGTGCAAACAAGATGATGCCCCTGATCATGTTGTAAGTCCGTCTGACTTTTATCTTTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

94

Amino Acids

10.7

Weight (kDa)

4.12

Isoelectric Point (pI)

28.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	214, 227
AgsI	TTSAA	1 cut(s)	116
AhlI	ACTAGT	1 cut(s)	206
AjnI	CCWGG	2 cut(s)	154, 215
AjuI	GAANNNNNNNTTGG	2 cut(s)	129, 161
AluBI	AGCT	2 cut(s)	107, 182
AluI	AGCT	2 cut(s)	107, 182
Alw21I	GWGCWC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	150
AlwI	GGATC	2 cut(s)	214, 227
ApaLI	GTGCAC	1 cut(s)	150
ApeKI	GCWGC	1 cut(s)	179
AspS9I	GGNCC	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	2 cut(s)	104, 154
BaeI	ACNNNNGTAYC	2 cut(s)	66, 99
BamHI	GGATCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	154
BbvI	GCAGC	1 cut(s)	191
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	156, 217
BclI	TGATCA	1 cut(s)	247
BcuI	ACTAGT	1 cut(s)	206
BfaI	CTAG	1 cut(s)	207
BisI	GCNGC	1 cut(s)	180
BlsI	GCNGC	1 cut(s)	181
Bme1390I	CCNGG	2 cut(s)	156, 217
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	2 cut(s)	130, 221
BmrFI	CCNGG	2 cut(s)	156, 217
BmrI	ACTGGG	1 cut(s)	184
BmsI	GCATC	2 cut(s)	101, 229
BmuI	ACTGGG	1 cut(s)	184
BpmI	CTGGAG	1 cut(s)	26
BsaJI	CCNNGG	2 cut(s)	132, 215
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	2 cut(s)	156, 217
BseDI	CCNNGG	2 cut(s)	132, 215
BseMII	CTCAG	1 cut(s)	87
BseNI	ACTGG	1 cut(s)	179
BseSI	GKGCMC	2 cut(s)	104, 154
BseXI	GCAGC	1 cut(s)	191
BsiHKAI	GWGCWC	1 cut(s)	154
Bsp1286I	GDGCHC	2 cut(s)	104, 154
Bsp143I	GATC	2 cut(s)	219, 247
Bsp19I	CCATGG	1 cut(s)	132
BspCNI	CTCAG	1 cut(s)	88
BspLI	GGNNCC	2 cut(s)	130, 221
BspPI	GGATC	2 cut(s)	214, 227
BsrI	ACTGG	1 cut(s)	179
BssECI	CCNNGG	2 cut(s)	132, 215
BssMI	GATC	2 cut(s)	219, 247
BssT1I	CCWWGG	1 cut(s)	132
Bst2UI	CCWGG	2 cut(s)	156, 217
BstDEI	CTNAG	1 cut(s)	96
BstDSI	CCRYGG	1 cut(s)	132
BstKTI	GATC	2 cut(s)	222, 250
BstMBI	GATC	2 cut(s)	219, 247
BstNI	CCWGG	2 cut(s)	156, 217
BstSCI	CCNGG	2 cut(s)	154, 215
BstSLI	GKGCMC	2 cut(s)	104, 154
BstV1I	GCAGC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	219
BstYI	RGATCY	1 cut(s)	219
BtgI	CCRYGG	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	128
CsiI	ACCWGGT	1 cut(s)	154
CviAII	CATG	2 cut(s)	133, 251
CviJI	RGCY	4 cut(s)	16, 107, 164, 182
CviKI_1	RGCY	4 cut(s)	16, 107, 164, 182
DdeI	CTNAG	1 cut(s)	96
DpnI	GATC	2 cut(s)	221, 249
DpnII	GATC	2 cut(s)	219, 247
Eco130I	CCWWGG	1 cut(s)	132
Eco47I	GGWCC	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	154, 215
EcoT14I	CCWWGG	1 cut(s)	132
ErhI	CCWWGG	1 cut(s)	132
FaeI	CATG	2 cut(s)	136, 254
FaiI	YATR	8 cut(s)	52, 65, 79, 81, 126, 134, 194, 252
FatI	CATG	2 cut(s)	132, 250
FauNDI	CATATG	1 cut(s)	79
FbaI	TGATCA	1 cut(s)	247
Fnu4HI	GCNGC	1 cut(s)	180
Fsp4HI	GCNGC	1 cut(s)	180
FspBI	CTAG	1 cut(s)	207
GluI	GCNGC	1 cut(s)	180
GsuI	CTGGAG	1 cut(s)	26
Hin1II	CATG	2 cut(s)	136, 254
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	2 cut(s)	97, 268
Hpy188III	TCNNGA	2 cut(s)	30, 40
Hpy8I	GTNNAC	1 cut(s)	152
HpyCH4V	TGCA	3 cut(s)	92, 152, 228
HpyF3I	CTNAG	1 cut(s)	96
Hsp92II	CATG	2 cut(s)	136, 254
Ksp22I	TGATCA	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	219, 247
LpnPI	CCDG	9 cut(s)	25, 43, 141, 160, 168, 202, 229, 236, 258
Lsp1109I	GCAGC	1 cut(s)	191
LweI	GCATC	2 cut(s)	101, 229
MabI	ACCWGGT	1 cut(s)	154
MaeI	CTAG	1 cut(s)	207
MalI	GATC	2 cut(s)	221, 249
MboI	GATC	2 cut(s)	219, 247
MflI	RGATCY	1 cut(s)	219
MhlI	GDGCHC	2 cut(s)	104, 154
MluCI	AATT	1 cut(s)	144
MnlI	CCTC	2 cut(s)	6, 91
MseI	TTAA	2 cut(s)	200, 283
MspA1I	CMGCKG	1 cut(s)	107
MspR9I	CCNGG	2 cut(s)	156, 217
MvaI	CCWGG	2 cut(s)	156, 217
NcoI	CCATGG	1 cut(s)	132
NdeI	CATATG	1 cut(s)	79
NdeII	GATC	2 cut(s)	219, 247
NlaIII	CATG	2 cut(s)	136, 254
NlaIV	GGNNCC	2 cut(s)	130, 221
PkrI	GCNGC	1 cut(s)	181
Psp6I	CCWGG	2 cut(s)	154, 215
PspGI	CCWGG	2 cut(s)	154, 215
PspN4I	GGNNCC	2 cut(s)	130, 221
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	219
PvuII	CAGCTG	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	200, 283
SatI	GCNGC	1 cut(s)	180
Sau3AI	GATC	2 cut(s)	219, 247
Sau96I	GGNCC	1 cut(s)	128
ScrFI	CCNGG	2 cut(s)	156, 217
SduI	GDGCHC	2 cut(s)	104, 154
SetI	ASST	3 cut(s)	109, 160, 184
SexAI	ACCWGGT	1 cut(s)	154
SfaNI	GCATC	2 cut(s)	101, 229
SinI	GGWCC	1 cut(s)	128
SpeI	ACTAGT	1 cut(s)	206
Sse9I	AATT	1 cut(s)	144
SspMI	CTAG	1 cut(s)	207
StyD4I	CCNGG	2 cut(s)	154, 215
StyI	CCWWGG	1 cut(s)	132
TasI	AATT	1 cut(s)	144
Tru1I	TTAA	2 cut(s)	200, 283
Tru9I	TTAA	2 cut(s)	200, 283
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	1 cut(s)	179
TspGWI	ACGGA	1 cut(s)	252
TspRI	CASTG	1 cut(s)	175
VneI	GTGCAC	1 cut(s)	150
VpaK11BI	GGWCC	1 cut(s)	128
XspI	CTAG	1 cut(s)	207

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.