Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Reverse (-)

81156033 .. 81166992

Gene Structure 10960 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG593500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 372 bp

ATGGACGGCGTAGCTGGGCCTAGGCTACTTCGATTTGGCGTCGGCAACACAGTCAAGATTGAAAATGAGTATGGACCCATGGAATACGAAATTGGTGCACCAAGTAAAGCCTACACTGACTGGGCAGCTCAAATGGTTGTGGGATTAAACACTAGTTTCCCCTGGAACCTGTGCAAACAAGATGATGCCCCTGATCTTGTTACAAGAACTGTCCAAGTACAGCAACTATCAGATCTAGCCAGCAAGAGAGAGATTCACGATTTTGAAGTAGCTCAACTTCCCAGGTGTCCACTTCCAGTCAAACCTGTGTTAAACAGTACCATGAGCACATGCACCTTCATCAATCCAAACATTCCCCACACAGCGGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

123

Amino Acids

13.6

Weight (kDa)

5.08

Isoelectric Point (pI)

37.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	365
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	219, 319
AfiI	CCNNNNNNNGG	1 cut(s)	364
AgsI	TTSAA	2 cut(s)	62, 266
AhlI	ACTAGT	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	161, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	14, 128, 272
AluI	AGCT	3 cut(s)	14, 128, 272
Alw21I	GWGCWC	2 cut(s)	100, 329
Alw44I	GTGCAC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	17
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	125
AspA2I	CCTAGG	1 cut(s)	20
AspS9I	GGNCC	2 cut(s)	17, 74
AvaII	GGWCC	1 cut(s)	74
AvrII	CCTAGG	1 cut(s)	20
BaeGI	GKGCMC	1 cut(s)	100
BarI	GAAGNNNNNNTAC	2 cut(s)	261, 293
Bbv12I	GWGCWC	2 cut(s)	100, 329
BbvI	GCAGC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	22
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BciT130I	CCWGG	2 cut(s)	163, 283
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	3 cut(s)	21, 153, 236
BglII	AGATCT	1 cut(s)	232
BisI	GCNGC	1 cut(s)	126
BlnI	CCTAGG	1 cut(s)	20
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	163, 283
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	17, 74
BmiI	GGNNCC	2 cut(s)	76, 167
BmrFI	CCNGG	2 cut(s)	163, 283
BmrI	ACTGGG	1 cut(s)	130
BmsI	GCATC	1 cut(s)	175
BmuI	ACTGGG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	4 cut(s)	20, 78, 161, 281
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	2 cut(s)	125, 296
BseBI	CCWGG	2 cut(s)	163, 283
BseDI	CCNNGG	4 cut(s)	20, 78, 161, 281
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseNI	ACTGG	2 cut(s)	125, 296
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	1 cut(s)	19
BsiHKAI	GWGCWC	2 cut(s)	100, 329
BslI	CCNNNNNNNGG	1 cut(s)	364
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	2 cut(s)	100, 329
Bsp143I	GATC	2 cut(s)	193, 232
Bsp19I	CCATGG	1 cut(s)	78
BspACI	CCGC	1 cut(s)	365
BspANI	GGCC	1 cut(s)	19
BspLI	GGNNCC	2 cut(s)	76, 167
BsrI	ACTGG	2 cut(s)	125, 296
BssECI	CCNNGG	4 cut(s)	20, 78, 161, 281
BssMI	GATC	2 cut(s)	193, 232
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	2 cut(s)	20, 78
Bst2UI	CCWGG	2 cut(s)	163, 283
Bst4CI	ACNGT	3 cut(s)	52, 211, 317
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	241
BstDSI	CCRYGG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	196, 235
BstMBI	GATC	2 cut(s)	193, 232
BstNI	CCWGG	2 cut(s)	163, 283
BstNSI	RCATGY	1 cut(s)	333
BstSCI	CCNGG	2 cut(s)	161, 281
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	137
BstX2I	RGATCY	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	232
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	114
Cac8I	GCNNGC	1 cut(s)	241
Cfr13I	GGNCC	2 cut(s)	17, 74
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	218, 318
CviAII	CATG	3 cut(s)	79, 322, 330
CviJI	RGCY	7 cut(s)	14, 19, 25, 110, 128, 239, 272
CviKI_1	RGCY	7 cut(s)	14, 19, 25, 110, 128, 239, 272
CviQI	GTAC	2 cut(s)	218, 318
DpnI	GATC	2 cut(s)	195, 234
DpnII	GATC	2 cut(s)	193, 232
Eco130I	CCWWGG	2 cut(s)	20, 78
Eco47I	GGWCC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	161, 281
EcoT14I	CCWWGG	2 cut(s)	20, 78
ErhI	CCWWGG	2 cut(s)	20, 78
FaeI	CATG	3 cut(s)	82, 325, 333
FaiI	YATR	4 cut(s)	72, 80, 323, 331
FatI	CATG	3 cut(s)	78, 321, 329
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	3 cut(s)	21, 153, 236
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	3 cut(s)	82, 325, 333
HinfI	GANTC	1 cut(s)	253
Hpy166II	GTNNAC	2 cut(s)	98, 290
Hpy188I	TCNGA	1 cut(s)	232
Hpy188III	TCNNGA	2 cut(s)	55, 257
Hpy8I	GTNNAC	2 cut(s)	98, 290
Hpy99I	CGWCG	1 cut(s)	44
HpyAV	CCTTC	1 cut(s)	346
HpyCH4III	ACNGT	3 cut(s)	52, 211, 317
HpyCH4V	TGCA	3 cut(s)	98, 174, 333
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	3 cut(s)	82, 325, 333
Kzo9I	GATC	2 cut(s)	193, 232
Lsp1109I	GCAGC	1 cut(s)	137
LweI	GCATC	1 cut(s)	175
MaeI	CTAG	3 cut(s)	21, 153, 236
MaeIII	GTNAC	1 cut(s)	199
MalI	GATC	2 cut(s)	195, 234
MboI	GATC	2 cut(s)	193, 232
MflI	RGATCY	1 cut(s)	232
MhlI	GDGCHC	2 cut(s)	100, 329
MluCI	AATT	1 cut(s)	90
MseI	TTAA	2 cut(s)	146, 311
MspA1I	CMGCKG	1 cut(s)	365
MspR9I	CCNGG	2 cut(s)	163, 283
MvaI	CCWGG	2 cut(s)	163, 283
NcoI	CCATGG	1 cut(s)	78
NdeII	GATC	2 cut(s)	193, 232
NlaIII	CATG	3 cut(s)	82, 325, 333
NlaIV	GGNNCC	2 cut(s)	76, 167
NspI	RCATGY	1 cut(s)	333
PfeI	GAWTC	1 cut(s)	253
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	161, 281
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	161, 281
PspN4I	GGNNCC	2 cut(s)	76, 167
PspPI	GGNCC	2 cut(s)	17, 74
PsuI	RGATCY	1 cut(s)	232
RsaI	GTAC	2 cut(s)	219, 319
RsaNI	GTAC	2 cut(s)	218, 318
SaqAI	TTAA	2 cut(s)	146, 311
SatI	GCNGC	1 cut(s)	126
Sau3AI	GATC	2 cut(s)	193, 232
Sau96I	GGNCC	2 cut(s)	17, 74
ScrFI	CCNGG	2 cut(s)	163, 283
SduI	GDGCHC	2 cut(s)	100, 329
SetI	ASST	7 cut(s)	16, 130, 171, 274, 287, 307, 338
SfaNI	GCATC	1 cut(s)	175
SinI	GGWCC	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	365
SspMI	CTAG	3 cut(s)	21, 153, 236
StyD4I	CCNGG	2 cut(s)	161, 281
StyI	CCWWGG	2 cut(s)	20, 78
TaaI	ACNGT	3 cut(s)	52, 211, 317
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	1 cut(s)	253
Tru1I	TTAA	2 cut(s)	146, 311
Tru9I	TTAA	2 cut(s)	146, 311
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	125
TspDTI	ATGAA	1 cut(s)	328
TspRI	CASTG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	74
XceI	RCATGY	1 cut(s)	333
XmaJI	CCTAGG	1 cut(s)	20
XspI	CTAG	3 cut(s)	21, 153, 236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.