Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Reverse (-)

39232935 .. 39233927

Gene Structure 993 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG346900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGGACGGCTTAGCTGGGCCTGGGCTACTTCGATTTGGCGTCGGCAACACAGTCAAGATTGAAAATGAGTATGGACCCATGGAATACAAAATTGGTGCACCAGGTCAAGCCTACACTGACTGGGCAGCTCAAATGGTTGTGGGATTAAACACTAGTTTCCCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

54

Amino Acids

5.73

Weight (kDa)

4.51

Isoelectric Point (pI)

8.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcyI	GRCGYC	1 cut(s)	39
AgsI	TTSAA	1 cut(s)	62
AhlI	ACTAGT	1 cut(s)	152
AjnI	CCWGG	2 cut(s)	19, 100
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	2 cut(s)	14, 128
AluI	AGCT	2 cut(s)	14, 128
Alw21I	GWGCWC	1 cut(s)	100
Alw44I	GTGCAC	1 cut(s)	96
AoxI	GGCC	1 cut(s)	17
ApaLI	GTGCAC	1 cut(s)	96
ApeKI	GCWGC	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	17, 74
AvaII	GGWCC	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	100
Bbv12I	GWGCWC	1 cut(s)	100
BbvI	GCAGC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	22
BciT130I	CCWGG	2 cut(s)	21, 102
BcuI	ACTAGT	1 cut(s)	152
BfaI	CTAG	2 cut(s)	153, 163
BisI	GCNGC	1 cut(s)	126
BlpI	GCTNAGC	1 cut(s)	10
BlsI	GCNGC	1 cut(s)	127
Bme1390I	CCNGG	2 cut(s)	21, 102
Bme18I	GGWCC	1 cut(s)	74
BmgT120I	GGNCC	2 cut(s)	17, 74
BmiI	GGNNCC	1 cut(s)	76
BmrFI	CCNGG	2 cut(s)	21, 102
BmrI	ACTGGG	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	130
Bpu1102I	GCTNAGC	1 cut(s)	10
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	2 cut(s)	20, 78
Bse1I	ACTGG	1 cut(s)	125
BseBI	CCWGG	2 cut(s)	21, 102
BseDI	CCNNGG	2 cut(s)	20, 78
BseNI	ACTGG	1 cut(s)	125
BseSI	GKGCMC	1 cut(s)	100
BseXI	GCAGC	1 cut(s)	137
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	1 cut(s)	19
BsiHKAI	GWGCWC	1 cut(s)	100
BsnI	GGCC	1 cut(s)	19
Bsp1286I	GDGCHC	1 cut(s)	100
Bsp1720I	GCTNAGC	1 cut(s)	10
Bsp19I	CCATGG	1 cut(s)	78
BspANI	GGCC	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	76
BsrI	ACTGG	1 cut(s)	125
BssECI	CCNNGG	2 cut(s)	20, 78
BssNI	GRCGYC	1 cut(s)	39
BssT1I	CCWWGG	1 cut(s)	78
Bst2UI	CCWGG	2 cut(s)	21, 102
Bst4CI	ACNGT	1 cut(s)	52
BstACI	GRCGYC	1 cut(s)	39
BstDEI	CTNAG	1 cut(s)	10
BstDSI	CCRYGG	1 cut(s)	78
BstNI	CCWGG	2 cut(s)	21, 102
BstSCI	CCNGG	2 cut(s)	19, 100
BstSLI	GKGCMC	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	137
BsuRI	GGCC	1 cut(s)	19
BtgI	CCRYGG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	114
Cfr13I	GGNCC	2 cut(s)	17, 74
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	100
CviAII	CATG	1 cut(s)	79
CviJI	RGCY	6 cut(s)	9, 14, 19, 25, 110, 128
CviKI_1	RGCY	6 cut(s)	9, 14, 19, 25, 110, 128
DdeI	CTNAG	1 cut(s)	10
Eco130I	CCWWGG	1 cut(s)	78
Eco47I	GGWCC	1 cut(s)	74
EcoRII	CCWGG	2 cut(s)	19, 100
EcoT14I	CCWWGG	1 cut(s)	78
ErhI	CCWWGG	1 cut(s)	78
FaeI	CATG	1 cut(s)	82
FaiI	YATR	2 cut(s)	72, 80
FatI	CATG	1 cut(s)	78
Fnu4HI	GCNGC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	126
FspBI	CTAG	2 cut(s)	153, 163
GluI	GCNGC	1 cut(s)	126
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	1 cut(s)	19
HgaI	GACGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	82
Hpy166II	GTNNAC	1 cut(s)	98
Hpy188III	TCNNGA	1 cut(s)	55
Hpy8I	GTNNAC	1 cut(s)	98
Hpy99I	CGWCG	1 cut(s)	44
HpyCH4III	ACNGT	1 cut(s)	52
HpyCH4V	TGCA	1 cut(s)	98
HpyF3I	CTNAG	1 cut(s)	10
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	82
LpnPI	CCDG	5 cut(s)	6, 33, 87, 106, 114
Lsp1109I	GCAGC	1 cut(s)	137
MabI	ACCWGGT	1 cut(s)	100
MaeI	CTAG	2 cut(s)	153, 163
MhlI	GDGCHC	1 cut(s)	100
MluCI	AATT	1 cut(s)	90
MseI	TTAA	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	21, 102
MvaI	CCWGG	2 cut(s)	21, 102
NcoI	CCATGG	1 cut(s)	78
NlaIII	CATG	1 cut(s)	82
NlaIV	GGNNCC	1 cut(s)	76
PkrI	GCNGC	1 cut(s)	127
Psp6I	CCWGG	2 cut(s)	19, 100
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	2 cut(s)	19, 100
PspN4I	GGNNCC	1 cut(s)	76
PspPI	GGNCC	2 cut(s)	17, 74
SaqAI	TTAA	1 cut(s)	146
SatI	GCNGC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	17, 74
ScrFI	CCNGG	2 cut(s)	21, 102
SduI	GDGCHC	1 cut(s)	100
SetI	ASST	3 cut(s)	16, 106, 130
SexAI	ACCWGGT	1 cut(s)	100
SgeI	CNNG	9 cut(s)	27, 32, 33, 67, 91, 113, 114, 119, 133
SinI	GGWCC	1 cut(s)	74
SpeI	ACTAGT	1 cut(s)	152
Sse9I	AATT	1 cut(s)	90
SspMI	CTAG	2 cut(s)	153, 163
StyD4I	CCNGG	2 cut(s)	19, 100
StyI	CCWWGG	1 cut(s)	78
TaaI	ACNGT	1 cut(s)	52
TaqI	TCGA	1 cut(s)	31
TasI	AATT	1 cut(s)	90
Tru1I	TTAA	1 cut(s)	146
Tru9I	TTAA	1 cut(s)	146
TscAI	CASTG	1 cut(s)	121
TseI	GCWGC	1 cut(s)	125
TspRI	CASTG	1 cut(s)	121
VneI	GTGCAC	1 cut(s)	96
VpaK11BI	GGWCC	1 cut(s)	74
XspI	CTAG	2 cut(s)	153, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.