Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Reverse (-)

47906371 .. 47925263

Gene Structure 18893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG349100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

ATGTCTACGGTTATATATCTATCCCAGGTCGCTAATCAATCCAATCTTCAGATTGAAAATGAGTATGGACCCATGGAATACGAAATTGGTGCACCAGGTAAAGCCTACACTGACTGGGCAGCTCAAATGGTTGTGGGATTAAACACTAGTTTCCCCTGGATCCTGTGCAAACAAGATGATGCCCCTGATCCTGTTGAAATGCCCTTATTCTATTCTAACCTGGTGGATGGTCACTTAACAGTCACACAGAATGACATGTGGATGAATTTAGCTCTCTGTTTTCATGACATGGAGGGTTTGGGTATTGCAGATGAGGTTAAAAAGCACAAGACCAACGACAAGTTCTGGTGCTACTGGAAACATAGGATCATATCGTTATTACTTAATGGTGCAACCAAGCAATCCGGCGTCTTTCAATGTAAGGACTCCATTAGAGACTATTCGAGCAACAAAGGAGGTGGGTTGATTGTTGGTTTGATGAGAGCTGCTGCTGCAGGGGATGTGGTCGATAGTGAACTTGTGGCAATGAAGCCGACAATCATCATCTTTCACAGTTTCTCCCAAACCAGAGCAAATCTTTTGGTTCCGATTTGGAACACGCGCGGAAAATCACAGAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

206

Amino Acids

23.07

Weight (kDa)

5.93

Isoelectric Point (pI)

30.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	601, 603
AciI	CCGC	1 cut(s)	603
AclWI	GGATC	4 cut(s)	154, 167, 182, 374
AcsI	RAATTY	1 cut(s)	265
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	408
AflIII	ACRYGT	1 cut(s)	255
AgsI	TTSAA	3 cut(s)	56, 197, 416
AhlI	ACTAGT	1 cut(s)	146
AjnI	CCWGG	4 cut(s)	24, 94, 155, 219
AjuI	GAANNNNNNNTTGG	4 cut(s)	69, 101, 326, 358
AluBI	AGCT	3 cut(s)	122, 272, 485
AluI	AGCT	3 cut(s)	122, 272, 485
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	1 cut(s)	429
Alw44I	GTGCAC	1 cut(s)	90
AlwI	GGATC	4 cut(s)	154, 167, 182, 374
ApaLI	GTGCAC	1 cut(s)	90
ApeKI	GCWGC	4 cut(s)	119, 485, 488, 491
ApoI	RAATTY	1 cut(s)	265
AspLEI	GCGC	1 cut(s)	603
AspS9I	GGNCC	1 cut(s)	68
AvaII	GGWCC	1 cut(s)	68
BaeGI	GKGCMC	1 cut(s)	94
BamHI	GGATCC	1 cut(s)	159
Bbv12I	GWGCWC	1 cut(s)	94
BbvI	GCAGC	4 cut(s)	131, 472, 475, 478
BccI	CCATC	1 cut(s)	221
BcgI	CGANNNNNNTGC	2 cut(s)	71, 105
BciT130I	CCWGG	4 cut(s)	26, 96, 157, 221
BcoDI	GTCTC	1 cut(s)	429
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	1 cut(s)	492
BisI	GCNGC	4 cut(s)	120, 486, 489, 492
BlsI	GCNGC	4 cut(s)	121, 487, 490, 493
Bme1390I	CCNGG	4 cut(s)	26, 96, 157, 221
Bme18I	GGWCC	1 cut(s)	68
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	3 cut(s)	70, 161, 585
BmrFI	CCNGG	4 cut(s)	26, 96, 157, 221
BmrI	ACTGGG	1 cut(s)	124
BmsI	GCATC	1 cut(s)	169
BmuI	ACTGGG	1 cut(s)	124
BsaHI	GRCGYC	1 cut(s)	408
BsaJI	CCNNGG	3 cut(s)	24, 72, 155
BsaXI	ACNNNNNCTCC	2 cut(s)	542, 572
Bse1I	ACTGG	2 cut(s)	119, 359
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	4 cut(s)	26, 96, 157, 221
BseDI	CCNNGG	3 cut(s)	24, 72, 155
BseGI	GGATG	3 cut(s)	232, 267, 505
BseMI	GCAATG	1 cut(s)	531
BseNI	ACTGG	2 cut(s)	119, 359
BseSI	GKGCMC	1 cut(s)	94
BseXI	GCAGC	4 cut(s)	131, 472, 475, 478
Bsh1236I	CGCG	2 cut(s)	601, 603
BsiHKAI	GWGCWC	1 cut(s)	94
BsiSI	CCGG	1 cut(s)	405
BsmAI	GTCTC	1 cut(s)	429
Bsp1286I	GDGCHC	1 cut(s)	94
Bsp143I	GATC	3 cut(s)	159, 187, 366
Bsp19I	CCATGG	1 cut(s)	72
BspACI	CCGC	1 cut(s)	603
BspFNI	CGCG	2 cut(s)	601, 603
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	3 cut(s)	70, 161, 585
BspMAI	CTGCAG	1 cut(s)	496
BspPI	GGATC	4 cut(s)	154, 167, 182, 374
BsrDI	GCAATG	1 cut(s)	531
BsrI	ACTGG	2 cut(s)	119, 359
BssECI	CCNNGG	3 cut(s)	24, 72, 155
BssMI	GATC	3 cut(s)	159, 187, 366
BssNI	GRCGYC	1 cut(s)	408
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	4 cut(s)	26, 96, 157, 221
Bst4CI	ACNGT	3 cut(s)	10, 241, 554
BstACI	GRCGYC	1 cut(s)	408
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	3 cut(s)	232, 267, 505
BstFNI	CGCG	2 cut(s)	601, 603
BstHHI	GCGC	1 cut(s)	603
BstKTI	GATC	3 cut(s)	162, 190, 369
BstMAI	GTCTC	1 cut(s)	429
BstMBI	GATC	3 cut(s)	159, 187, 366
BstMWI	GCNNNNNNNGC	1 cut(s)	491
BstNI	CCWGG	4 cut(s)	26, 96, 157, 221
BstNSI	RCATGY	1 cut(s)	259
BstSCI	CCNGG	4 cut(s)	24, 94, 155, 219
BstSFI	CTRYAG	1 cut(s)	492
BstSLI	GKGCMC	1 cut(s)	94
BstUI	CGCG	2 cut(s)	601, 603
BstV1I	GCAGC	4 cut(s)	131, 472, 475, 478
BstX2I	RGATCY	1 cut(s)	159
BstYI	RGATCY	1 cut(s)	159
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	3 cut(s)	232, 267, 505
BtsIMutI	CAGTG	1 cut(s)	108
CciI	TCATGA	1 cut(s)	283
CfoI	GCGC	1 cut(s)	603
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	397
CsiI	ACCWGGT	2 cut(s)	94, 219
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	4 cut(s)	73, 256, 284, 289
CviJI	RGCY	5 cut(s)	104, 122, 272, 485, 532
CviKI_1	RGCY	5 cut(s)	104, 122, 272, 485, 532
DpnI	GATC	3 cut(s)	161, 189, 368
DpnII	GATC	3 cut(s)	159, 187, 366
Eco130I	CCWWGG	1 cut(s)	72
Eco47I	GGWCC	1 cut(s)	68
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	4 cut(s)	24, 94, 155, 219
EcoT14I	CCWWGG	1 cut(s)	72
ErhI	CCWWGG	1 cut(s)	72
FaeI	CATG	4 cut(s)	76, 259, 287, 292
FaiI	YATR	9 cut(s)	14, 16, 66, 74, 257, 285, 290, 363, 371
FatI	CATG	4 cut(s)	72, 255, 283, 288
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	4 cut(s)	120, 486, 489, 492
FokI	GGATG	3 cut(s)	239, 274, 512
Fsp4HI	GCNGC	4 cut(s)	120, 486, 489, 492
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	602
GluI	GCNGC	4 cut(s)	120, 486, 489, 492
HapII	CCGG	1 cut(s)	405
HgaI	GACGC	1 cut(s)	397
HhaI	GCGC	1 cut(s)	603
Hin1I	GRCGYC	1 cut(s)	408
Hin1II	CATG	4 cut(s)	76, 259, 287, 292
Hin6I	GCGC	1 cut(s)	601
HinP1I	GCGC	1 cut(s)	601
HinfI	GANTC	1 cut(s)	425
HpaII	CCGG	1 cut(s)	405
Hpy166II	GTNNAC	3 cut(s)	6, 92, 515
Hpy188I	TCNGA	2 cut(s)	51, 588
Hpy188III	TCNNGA	1 cut(s)	284
Hpy8I	GTNNAC	3 cut(s)	6, 92, 515
HpyCH4III	ACNGT	3 cut(s)	10, 241, 554
HpyCH4V	TGCA	5 cut(s)	92, 168, 308, 392, 494
HpyF10VI	GCNNNNNNNGC	1 cut(s)	491
Hsp92I	GRCGYC	1 cut(s)	408
Hsp92II	CATG	4 cut(s)	76, 259, 287, 292
HspAI	GCGC	1 cut(s)	601
Kzo9I	GATC	3 cut(s)	159, 187, 366
Lsp1109I	GCAGC	4 cut(s)	131, 472, 475, 478
LweI	GCATC	1 cut(s)	169
MabI	ACCWGGT	2 cut(s)	94, 219
MaeI	CTAG	1 cut(s)	147
MaeIII	GTNAC	2 cut(s)	230, 241
MalI	GATC	3 cut(s)	161, 189, 368
MboI	GATC	3 cut(s)	159, 187, 366
MboII	GAAGA	1 cut(s)	38
MflI	RGATCY	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	94
MluCI	AATT	2 cut(s)	84, 265
MlyI	GAGTC	1 cut(s)	419
MnlI	CCTC	4 cut(s)	286, 307, 449, 609
MseI	TTAA	4 cut(s)	140, 236, 318, 384
MslI	CAYNNNNRTG	1 cut(s)	260
MspI	CCGG	1 cut(s)	405
MspR9I	CCNGG	4 cut(s)	26, 96, 157, 221
MvaI	CCWGG	4 cut(s)	26, 96, 157, 221
MvnI	CGCG	2 cut(s)	601, 603
MwoI	GCNNNNNNNGC	1 cut(s)	491
NcoI	CCATGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	159, 187, 366
NlaIII	CATG	4 cut(s)	76, 259, 287, 292
NlaIV	GGNNCC	3 cut(s)	70, 161, 585
NmuCI	GTSAC	2 cut(s)	230, 241
NspI	RCATGY	1 cut(s)	259
PagI	TCATGA	1 cut(s)	283
PciI	ACATGT	1 cut(s)	255
PkrI	GCNGC	4 cut(s)	121, 487, 490, 493
PleI	GAGTC	1 cut(s)	419
PpsI	GAGTC	1 cut(s)	419
PscI	ACATGT	1 cut(s)	255
Psp6I	CCWGG	4 cut(s)	24, 94, 155, 219
PspGI	CCWGG	4 cut(s)	24, 94, 155, 219
PspN4I	GGNNCC	3 cut(s)	70, 161, 585
PspPI	GGNCC	1 cut(s)	68
PstI	CTGCAG	1 cut(s)	496
PsuI	RGATCY	1 cut(s)	159
RseI	CAYNNNNRTG	1 cut(s)	260
SaqAI	TTAA	4 cut(s)	140, 236, 318, 384
SatI	GCNGC	4 cut(s)	120, 486, 489, 492
Sau3AI	GATC	3 cut(s)	159, 187, 366
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	1 cut(s)	419
ScrFI	CCNGG	4 cut(s)	26, 96, 157, 221
SduI	GDGCHC	1 cut(s)	94
SetI	ASST	9 cut(s)	30, 100, 124, 222, 274, 318, 460, 487, 620
SexAI	ACCWGGT	2 cut(s)	94, 219
SfaNI	GCATC	1 cut(s)	169
SfcI	CTRYAG	1 cut(s)	492
SinI	GGWCC	1 cut(s)	68
SmiMI	CAYNNNNRTG	1 cut(s)	260
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	2 cut(s)	84, 265
SsiI	CCGC	1 cut(s)	603
SspMI	CTAG	1 cut(s)	147
StyD4I	CCNGG	4 cut(s)	24, 94, 155, 219
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	3 cut(s)	10, 241, 554
TaqI	TCGA	2 cut(s)	443, 507
TasI	AATT	2 cut(s)	84, 265
Tru1I	TTAA	4 cut(s)	140, 236, 318, 384
Tru9I	TTAA	4 cut(s)	140, 236, 318, 384
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	2 cut(s)	230, 241
TseI	GCWGC	4 cut(s)	119, 485, 488, 491
Tsp45I	GTSAC	2 cut(s)	230, 241
TspDTI	ATGAA	3 cut(s)	272, 278, 542
TspRI	CASTG	1 cut(s)	115
VneI	GTGCAC	1 cut(s)	90
VpaK11BI	GGWCC	1 cut(s)	68
XapI	RAATTY	1 cut(s)	265
XceI	RCATGY	1 cut(s)	259
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.