Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Reverse (-)

22639239 .. 22640247

Gene Structure 1009 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG224600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGGATGGCGTAGCTGGGCCTGGGCTACTTCGATCTAGCGTCAGCAACTCAGTTAAGGTTGAAGGTGCTGTTGAGAGAAGGAAGAATATGAATTTGGTTGTTTATATAGCTCGGCACTTTGAGCTCAGAGATTATATCCATTCTGCTGTCTCAGGACTTCTTCCTTTTATCAAAAATATTGAAAATGAGTATGGACCCATGCAATACGAAATTGGTGCACCTGGTAGAGCGTACACTGACTGGGCAGCTCAAATCGTTGTGGGACTAAACACTAGTTTCCCCTGGGTCCTGTGCAAACAAGATGATGCCCCGGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

105

Amino Acids

11.58

Weight (kDa)

6.06

Isoelectric Point (pI)

38.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	91
AfaI	GTAC	1 cut(s)	233
AgsI	TTSAA	2 cut(s)	62, 182
AhlI	ACTAGT	1 cut(s)	272
AjnI	CCWGG	3 cut(s)	19, 220, 281
AjuI	GAANNNNNNNTTGG	2 cut(s)	77, 109
AluBI	AGCT	4 cut(s)	14, 110, 124, 248
AluI	AGCT	4 cut(s)	14, 110, 124, 248
Alw21I	GWGCWC	2 cut(s)	126, 220
Alw26I	GTCTC	1 cut(s)	154
Alw44I	GTGCAC	1 cut(s)	216
AoxI	GGCC	2 cut(s)	17, 312
ApaLI	GTGCAC	1 cut(s)	216
ApeKI	GCWGC	1 cut(s)	245
ApoI	RAATTY	1 cut(s)	91
AspS9I	GGNCC	3 cut(s)	17, 194, 286
AsuC2I	CCSGG	1 cut(s)	311
AvaII	GGWCC	2 cut(s)	194, 286
BaeGI	GKGCMC	1 cut(s)	220
BanII	GRGCYC	1 cut(s)	126
Bbv12I	GWGCWC	2 cut(s)	126, 220
BbvI	GCAGC	1 cut(s)	257
BcgI	CGANNNNNNTGC	2 cut(s)	197, 231
BciT130I	CCWGG	3 cut(s)	21, 222, 283
BcnI	CCSGG	1 cut(s)	311
BcoDI	GTCTC	1 cut(s)	154
BcuI	ACTAGT	1 cut(s)	272
BfaI	CTAG	2 cut(s)	36, 273
BisI	GCNGC	1 cut(s)	246
BlsI	GCNGC	1 cut(s)	247
Bme1390I	CCNGG	4 cut(s)	21, 222, 283, 311
Bme18I	GGWCC	2 cut(s)	194, 286
BmgT120I	GGNCC	3 cut(s)	17, 194, 286
BmiI	GGNNCC	2 cut(s)	196, 287
BmrFI	CCNGG	4 cut(s)	21, 222, 283, 311
BmrI	ACTGGG	1 cut(s)	250
BmsI	GCATC	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	250
BpuMI	CCSGG	1 cut(s)	311
BsaJI	CCNNGG	4 cut(s)	20, 281, 282, 309
Bse1I	ACTGG	1 cut(s)	245
BseBI	CCWGG	3 cut(s)	21, 222, 283
BseDI	CCNNGG	4 cut(s)	20, 281, 282, 309
BseGI	GGATG	1 cut(s)	10
BseMII	CTCAG	3 cut(s)	63, 139, 165
BseNI	ACTGG	1 cut(s)	245
BseSI	GKGCMC	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	257
BseYI	CCCAGC	1 cut(s)	14
BshFI	GGCC	2 cut(s)	19, 314
BsiHKAI	GWGCWC	2 cut(s)	126, 220
BsiSI	CCGG	1 cut(s)	311
BslFI	GGGAC	1 cut(s)	276
BsmAI	GTCTC	1 cut(s)	154
BsmFI	GGGAC	1 cut(s)	276
BsnI	GGCC	2 cut(s)	19, 314
Bsp1286I	GDGCHC	2 cut(s)	126, 220
Bsp143I	GATC	1 cut(s)	32
BspANI	GGCC	2 cut(s)	19, 314
BspCNI	CTCAG	3 cut(s)	62, 138, 164
BspLI	GGNNCC	2 cut(s)	196, 287
BsrI	ACTGG	1 cut(s)	245
BssECI	CCNNGG	4 cut(s)	20, 281, 282, 309
BssMI	GATC	1 cut(s)	32
Bst2UI	CCWGG	3 cut(s)	21, 222, 283
BstDEI	CTNAG	3 cut(s)	49, 125, 151
BstF5I	GGATG	1 cut(s)	10
BstKTI	GATC	1 cut(s)	35
BstMAI	GTCTC	1 cut(s)	154
BstMBI	GATC	1 cut(s)	32
BstMWI	GCNNNNNNNGC	1 cut(s)	121
BstNI	CCWGG	3 cut(s)	21, 222, 283
BstSCI	CCNGG	4 cut(s)	19, 220, 281, 309
BstSLI	GKGCMC	1 cut(s)	220
BstV1I	GCAGC	1 cut(s)	257
BsuRI	GGCC	2 cut(s)	19, 314
BtsCI	GGATG	1 cut(s)	10
BtsIMutI	CAGTG	1 cut(s)	234
Cfr13I	GGNCC	3 cut(s)	17, 194, 286
CseI	GACGC	1 cut(s)	28
CsiI	ACCWGGT	1 cut(s)	220
Csp6I	GTAC	1 cut(s)	232
CviAII	CATG	1 cut(s)	199
CviJI	RGCY	7 cut(s)	14, 19, 25, 110, 124, 248, 314
CviKI_1	RGCY	7 cut(s)	14, 19, 25, 110, 124, 248, 314
CviQI	GTAC	1 cut(s)	232
DdeI	CTNAG	3 cut(s)	49, 125, 151
DpnI	GATC	1 cut(s)	34
DpnII	GATC	1 cut(s)	32
Ecl136II	GAGCTC	1 cut(s)	124
Eco24I	GRGCYC	1 cut(s)	126
Eco47I	GGWCC	2 cut(s)	194, 286
Eco53kI	GAGCTC	1 cut(s)	124
EcoICRI	GAGCTC	1 cut(s)	124
EcoO109I	RGGNCCY	1 cut(s)	286
EcoRII	CCWGG	3 cut(s)	19, 220, 281
EcoT38I	GRGCYC	1 cut(s)	126
FaeI	CATG	1 cut(s)	202
FaiI	YATR	6 cut(s)	89, 105, 107, 135, 192, 200
FaqI	GGGAC	1 cut(s)	276
FatI	CATG	1 cut(s)	198
Fnu4HI	GCNGC	1 cut(s)	246
FokI	GGATG	1 cut(s)	17
FriOI	GRGCYC	1 cut(s)	126
Fsp4HI	GCNGC	1 cut(s)	246
FspBI	CTAG	2 cut(s)	36, 273
GluI	GCNGC	1 cut(s)	246
GsaI	CCCAGC	1 cut(s)	18
HaeIII	GGCC	2 cut(s)	19, 314
HapII	CCGG	1 cut(s)	311
HgaI	GACGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	202
HpaII	CCGG	1 cut(s)	311
Hpy166II	GTNNAC	2 cut(s)	218, 234
Hpy188I	TCNGA	1 cut(s)	128
Hpy188III	TCNNGA	1 cut(s)	153
Hpy8I	GTNNAC	2 cut(s)	218, 234
HpyAV	CCTTC	2 cut(s)	56, 72
HpyCH4V	TGCA	3 cut(s)	202, 218, 294
HpyF10VI	GCNNNNNNNGC	1 cut(s)	121
HpyF3I	CTNAG	3 cut(s)	49, 125, 151
Hsp92II	CATG	1 cut(s)	202
Kzo9I	GATC	1 cut(s)	32
LpnPI	CCDG	9 cut(s)	6, 33, 138, 207, 226, 234, 268, 295, 302
Lsp1109I	GCAGC	1 cut(s)	257
LweI	GCATC	1 cut(s)	295
MabI	ACCWGGT	1 cut(s)	220
MaeI	CTAG	2 cut(s)	36, 273
MalI	GATC	1 cut(s)	34
MboI	GATC	1 cut(s)	32
MboII	GAAGA	2 cut(s)	94, 152
MhlI	GDGCHC	2 cut(s)	126, 220
MluCI	AATT	2 cut(s)	91, 210
MseI	TTAA	1 cut(s)	54
MspI	CCGG	1 cut(s)	311
MspR9I	CCNGG	4 cut(s)	21, 222, 283, 311
MvaI	CCWGG	3 cut(s)	21, 222, 283
MwoI	GCNNNNNNNGC	1 cut(s)	121
NciI	CCSGG	1 cut(s)	311
NdeII	GATC	1 cut(s)	32
NlaIII	CATG	1 cut(s)	202
NlaIV	GGNNCC	2 cut(s)	196, 287
NmeAIII	GCCGAG	1 cut(s)	91
PasI	CCCWGGG	1 cut(s)	282
PkrI	GCNGC	1 cut(s)	247
PpuMI	RGGWCCY	1 cut(s)	286
Psp124BI	GAGCTC	1 cut(s)	126
Psp5II	RGGWCCY	1 cut(s)	286
Psp6I	CCWGG	3 cut(s)	19, 220, 281
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	3 cut(s)	19, 220, 281
PspN4I	GGNNCC	2 cut(s)	196, 287
PspPI	GGNCC	3 cut(s)	17, 194, 286
PspPPI	RGGWCCY	1 cut(s)	286
RsaI	GTAC	1 cut(s)	233
RsaNI	GTAC	1 cut(s)	232
SacI	GAGCTC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	1 cut(s)	246
Sau3AI	GATC	1 cut(s)	32
Sau96I	GGNCC	3 cut(s)	17, 194, 286
ScrFI	CCNGG	4 cut(s)	21, 222, 283, 311
SduI	GDGCHC	2 cut(s)	126, 220
SetI	ASST	7 cut(s)	16, 60, 67, 112, 126, 223, 250
SexAI	ACCWGGT	1 cut(s)	220
SfaNI	GCATC	1 cut(s)	295
SinI	GGWCC	2 cut(s)	194, 286
SpeI	ACTAGT	1 cut(s)	272
Sse9I	AATT	2 cut(s)	91, 210
SspI	AATATT	1 cut(s)	178
SspMI	CTAG	2 cut(s)	36, 273
SstI	GAGCTC	1 cut(s)	126
StyD4I	CCNGG	4 cut(s)	19, 220, 281, 309
TaqI	TCGA	1 cut(s)	31
TasI	AATT	2 cut(s)	91, 210
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	1 cut(s)	245
TspDTI	ATGAA	1 cut(s)	104
TspRI	CASTG	1 cut(s)	241
VneI	GTGCAC	1 cut(s)	216
VpaK11BI	GGWCC	2 cut(s)	194, 286
XapI	RAATTY	1 cut(s)	91
XspI	CTAG	2 cut(s)	36, 273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.