Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0020478.1

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Forward (+)

31736 .. 32233

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0020478.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

atggcgtcggcaacacaatcaagagatgaaaccgctcagattgaaaatgagtatggacccatggaatacgaaattggtgcaccaggtaaagcctacattgactgggcagctcaaatggttgtgggattaaacactagtttcccctggatcctgtgcaaacaagatgatgcccctgatcctgttgtatttgagcaattatggttccaggtaacccctctgttcttctccatttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005911 GO:0009505 GO:0009506 GO:0015925 GO:0016787 GO:0016798 GO:0030054 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

77

Amino Acids

8.7

Weight (kDa)

4.05

Isoelectric Point (pI)

37.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	35
AciI	CCGC	1 cut(s)	33
AclWI	GGATC	3 cut(s)	142, 155, 170
AcyI	GRCGYC	1 cut(s)	5
AgsI	TTSAA	1 cut(s)	44
AhlI	ACTAGT	1 cut(s)	134
AjnI	CCWGG	3 cut(s)	82, 143, 204
AjuI	GAANNNNNNNTTGG	2 cut(s)	57, 89
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Alw21I	GWGCWC	1 cut(s)	82
Alw44I	GTGCAC	1 cut(s)	78
AlwI	GGATC	3 cut(s)	142, 155, 170
ApaLI	GTGCAC	1 cut(s)	78
ApeKI	GCWGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	56
AvaII	GGWCC	1 cut(s)	56
BaeGI	GKGCMC	1 cut(s)	82
BamHI	GGATCC	1 cut(s)	147
Bbv12I	GWGCWC	1 cut(s)	82
BbvI	GCAGC	1 cut(s)	119
BcgI	CGANNNNNNTGC	2 cut(s)	59, 93
BciT130I	CCWGG	3 cut(s)	84, 145, 206
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	1 cut(s)	135
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	3 cut(s)	84, 145, 206
Bme18I	GGWCC	1 cut(s)	56
BmgT120I	GGNCC	1 cut(s)	56
BmiI	GGNNCC	3 cut(s)	58, 149, 203
BmrFI	CCNGG	3 cut(s)	84, 145, 206
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	157
BmuI	ACTGGG	1 cut(s)	112
BsaHI	GRCGYC	1 cut(s)	5
BsaJI	CCNNGG	2 cut(s)	60, 143
Bse1I	ACTGG	1 cut(s)	107
BseBI	CCWGG	3 cut(s)	84, 145, 206
BseDI	CCNNGG	2 cut(s)	60, 143
BseMII	CTCAG	1 cut(s)	50
BseNI	ACTGG	1 cut(s)	107
BseSI	GKGCMC	1 cut(s)	82
BseXI	GCAGC	1 cut(s)	119
BsiHKAI	GWGCWC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	82
Bsp143I	GATC	2 cut(s)	147, 175
Bsp19I	CCATGG	1 cut(s)	60
BspACI	CCGC	1 cut(s)	33
BspCNI	CTCAG	1 cut(s)	49
BspLI	GGNNCC	3 cut(s)	58, 149, 203
BspPI	GGATC	3 cut(s)	142, 155, 170
BsrBI	CCGCTC	1 cut(s)	35
BsrI	ACTGG	1 cut(s)	107
BssECI	CCNNGG	2 cut(s)	60, 143
BssMI	GATC	2 cut(s)	147, 175
BssNI	GRCGYC	1 cut(s)	5
BssT1I	CCWWGG	1 cut(s)	60
Bst2UI	CCWGG	3 cut(s)	84, 145, 206
BstACI	GRCGYC	1 cut(s)	5
BstDEI	CTNAG	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	60
BstEII	GGTNACC	1 cut(s)	208
BstKTI	GATC	2 cut(s)	150, 178
BstMBI	GATC	2 cut(s)	147, 175
BstNI	CCWGG	3 cut(s)	84, 145, 206
BstPI	GGTNACC	1 cut(s)	208
BstSCI	CCNGG	3 cut(s)	82, 143, 204
BstSLI	GKGCMC	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	1 cut(s)	147
BstYI	RGATCY	1 cut(s)	147
BtgI	CCRYGG	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	56
CsiI	ACCWGGT	1 cut(s)	82
CviAII	CATG	1 cut(s)	61
CviJI	RGCY	2 cut(s)	92, 110
CviKI_1	RGCY	2 cut(s)	92, 110
DdeI	CTNAG	1 cut(s)	36
DpnI	GATC	2 cut(s)	149, 177
DpnII	GATC	2 cut(s)	147, 175
Eco130I	CCWWGG	1 cut(s)	60
Eco47I	GGWCC	1 cut(s)	56
Eco91I	GGTNACC	1 cut(s)	208
EcoO65I	GGTNACC	1 cut(s)	208
EcoRII	CCWGG	3 cut(s)	82, 143, 204
EcoT14I	CCWWGG	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	60
FaeI	CATG	1 cut(s)	64
FaiI	YATR	3 cut(s)	54, 62, 199
FatI	CATG	1 cut(s)	60
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	135
GluI	GCNGC	1 cut(s)	108
Hin1I	GRCGYC	1 cut(s)	5
Hin1II	CATG	1 cut(s)	64
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	1 cut(s)	39
Hpy188III	TCNNGA	1 cut(s)	21
Hpy8I	GTNNAC	1 cut(s)	80
Hpy99I	CGWCG	1 cut(s)	10
HpyCH4V	TGCA	2 cut(s)	80, 156
HpyF3I	CTNAG	1 cut(s)	36
Hsp92I	GRCGYC	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	147, 175
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	1 cut(s)	157
MabI	ACCWGGT	1 cut(s)	82
MaeI	CTAG	1 cut(s)	135
MaeIII	GTNAC	1 cut(s)	208
MalI	GATC	2 cut(s)	149, 177
MbiI	CCGCTC	1 cut(s)	35
MboI	GATC	2 cut(s)	147, 175
MboII	GAAGA	1 cut(s)	214
MflI	RGATCY	1 cut(s)	147
MhlI	GDGCHC	1 cut(s)	82
MluCI	AATT	2 cut(s)	72, 194
MnlI	CCTC	1 cut(s)	225
MseI	TTAA	2 cut(s)	128, 232
MspR9I	CCNGG	3 cut(s)	84, 145, 206
MvaI	CCWGG	3 cut(s)	84, 145, 206
NcoI	CCATGG	1 cut(s)	60
NdeII	GATC	2 cut(s)	147, 175
NlaIII	CATG	1 cut(s)	64
NlaIV	GGNNCC	3 cut(s)	58, 149, 203
PkrI	GCNGC	1 cut(s)	109
Psp6I	CCWGG	3 cut(s)	82, 143, 204
PspEI	GGTNACC	1 cut(s)	208
PspGI	CCWGG	3 cut(s)	82, 143, 204
PspN4I	GGNNCC	3 cut(s)	58, 149, 203
PspPI	GGNCC	1 cut(s)	56
PsuI	RGATCY	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	128, 232
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	2 cut(s)	147, 175
Sau96I	GGNCC	1 cut(s)	56
ScrFI	CCNGG	3 cut(s)	84, 145, 206
SduI	GDGCHC	1 cut(s)	82
SetI	ASST	3 cut(s)	88, 112, 210
SexAI	ACCWGGT	1 cut(s)	82
SfaNI	GCATC	1 cut(s)	157
SinI	GGWCC	1 cut(s)	56
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	2 cut(s)	72, 194
SsiI	CCGC	1 cut(s)	33
SspMI	CTAG	1 cut(s)	135
StyD4I	CCNGG	3 cut(s)	82, 143, 204
StyI	CCWWGG	1 cut(s)	60
TasI	AATT	2 cut(s)	72, 194
Tru1I	TTAA	2 cut(s)	128, 232
Tru9I	TTAA	2 cut(s)	128, 232
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	1 cut(s)	42
VneI	GTGCAC	1 cut(s)	78
VpaK11BI	GGWCC	1 cut(s)	56
XspI	CTAG	1 cut(s)	135

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.