Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Forward (+)

9681249 .. 9681953

Gene Structure 705 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0072700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGCTCTCTCCAAACTGCTAGTTTTTGTTCCAGTTATCTTCCTAATTCTGATGGGAATGATGACCGAGGCGGCAACTCCTCCGGGAATTGCGAAGAATCCTAGCAATGCAAGGTGTTTGATAAAGAAGTACAAGCATTGTTACAATTTGGTGCATGTGTGCCCCAAGTTTTGTCCCGATAAGTGCACAGTTGAGTGTGTGTCATGTAAACCCATCTGTTCTGGGGGAACAACATCTCCCACTACACCTTCACCAACACCTACACCTACGCCACCAACTCCTACTCCATCACCTCCCAAATATTACCCTTCTCCTCCTCCTAAAACTCCGACACCACCAACCCCAACCCCAACACCGCCAACTCCAACTCCATCACCTCCCAAATATTATCCTCCTCCTCCTAAAACGCCCACACCGCCTACTCCAACCCCAACACCGCCAACTCCATCACCTCCAACTCCAACTCCCACACCACCAACCCCGACCCCAACACCTCCAACTCCCACACCGCCAACCCCAACGCCTACTCCCTCATCGCCAACCCCTACTCCTTCACCTCCATCAACTCCTACTCCACCAAAGAAAGGAAAGTGCAAGAACAAGAACTACCCCCAGTGCTACAACATTGAACATGCATGCCCTAGCTCCTGCCCTGGTGGATGTGAGGTGGATTGTGTCACTTGCAAGCCAGTCTGTAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0015925 GO:0016787 GO:0016798 GO:0030312 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

234

Amino Acids

24.51

Weight (kDa)

9.17

Isoelectric Point (pI)

70.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	5 cut(s)	71, 356, 416, 437, 509
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	584
AgsI	TTSAA	1 cut(s)	629
AjnI	CCWGG	1 cut(s)	652
AloI	GAACNNNNNNTCC	2 cut(s)	220, 252
AluBI	AGCT	1 cut(s)	645
AluI	AGCT	1 cut(s)	645
Alw21I	GWGCWC	1 cut(s)	188
Alw44I	GTGCAC	1 cut(s)	184
ApaLI	GTGCAC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	84
AsuHPI	GGTGA	5 cut(s)	243, 282, 366, 441, 546
BaeGI	GKGCMC	2 cut(s)	164, 188
Bbv12I	GWGCWC	1 cut(s)	188
BccI	CCATC	6 cut(s)	46, 221, 295, 379, 454, 568
BciT130I	CCWGG	1 cut(s)	654
BcnI	CCSGG	1 cut(s)	84
BfaI	CTAG	3 cut(s)	20, 102, 642
BfmI	CTRYAG	1 cut(s)	694
BisI	GCNGC	1 cut(s)	72
BlsI	GCNGC	1 cut(s)	73
Bme1390I	CCNGG	2 cut(s)	84, 654
BmrFI	CCNGG	2 cut(s)	84, 654
BmrI	ACTGGG	1 cut(s)	607
BmuI	ACTGGG	1 cut(s)	607
BpuMI	CCSGG	1 cut(s)	84
BsaJI	CCNNGG	2 cut(s)	66, 652
Bsc4I	CCNNNNNNNGG	1 cut(s)	584
Bse1I	ACTGG	3 cut(s)	32, 613, 689
Bse3DI	GCAATG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	654
BseDI	CCNNGG	2 cut(s)	66, 652
BseGI	GGATG	1 cut(s)	665
BseLI	CCNNNNNNNGG	1 cut(s)	584
BseMI	GCAATG	1 cut(s)	112
BseNI	ACTGG	3 cut(s)	32, 613, 689
BseRI	GAGGAG	5 cut(s)	69, 303, 306, 384, 387
BseSI	GKGCMC	2 cut(s)	164, 188
BsiHKAI	GWGCWC	1 cut(s)	188
BsiSI	CCGG	1 cut(s)	83
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	1 cut(s)	584
BsmFI	GGGAC	1 cut(s)	159
Bsp1286I	GDGCHC	2 cut(s)	164, 188
BspACI	CCGC	5 cut(s)	71, 356, 416, 437, 509
BsrDI	GCAATG	1 cut(s)	112
BsrI	ACTGG	3 cut(s)	32, 613, 689
BssECI	CCNNGG	2 cut(s)	66, 652
Bst2UI	CCWGG	1 cut(s)	654
Bst4CI	ACNGT	1 cut(s)	190
BstC8I	GCNNGC	2 cut(s)	637, 686
BstF5I	GGATG	1 cut(s)	665
BstMWI	GCNNNNNNNGC	1 cut(s)	415
BstNI	CCWGG	1 cut(s)	654
BstNSI	RCATGY	3 cut(s)	158, 635, 639
BstSCI	CCNGG	2 cut(s)	82, 652
BstSFI	CTRYAG	1 cut(s)	694
BstSLI	GKGCMC	2 cut(s)	164, 188
BtgZI	GCGATG	1 cut(s)	519
BtsCI	GGATG	1 cut(s)	665
BtsIMutI	CAGTG	1 cut(s)	620
Cac8I	GCNNGC	2 cut(s)	637, 686
Csp6I	GTAC	1 cut(s)	130
CviAII	CATG	4 cut(s)	155, 204, 632, 636
CviJI	RGCY	3 cut(s)	5, 645, 688
CviKI_1	RGCY	3 cut(s)	5, 645, 688
CviQI	GTAC	1 cut(s)	130
EcoRII	CCWGG	1 cut(s)	652
EcoT22I	ATGCAT	1 cut(s)	637
FaeI	CATG	4 cut(s)	158, 207, 635, 639
FaiI	YATR	4 cut(s)	156, 205, 633, 637
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	4 cut(s)	154, 203, 631, 635
Fnu4HI	GCNGC	1 cut(s)	72
FokI	GGATG	1 cut(s)	672
Fsp4HI	GCNGC	1 cut(s)	72
FspBI	CTAG	3 cut(s)	20, 102, 642
GluI	GCNGC	1 cut(s)	72
HapII	CCGG	1 cut(s)	83
Hin1II	CATG	4 cut(s)	158, 207, 635, 639
HinfI	GANTC	1 cut(s)	97
HpaII	CCGG	1 cut(s)	83
HphI	GGTGA	5 cut(s)	243, 282, 366, 441, 546
Hpy166II	GTNNAC	2 cut(s)	186, 209
Hpy188I	TCNGA	2 cut(s)	51, 330
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	186, 209
HpyAV	CCTTC	3 cut(s)	258, 318, 561
HpyCH4III	ACNGT	1 cut(s)	190
HpyCH4V	TGCA	6 cut(s)	110, 154, 186, 594, 635, 684
HpyF10VI	GCNNNNNNNGC	1 cut(s)	415
Hsp92II	CATG	4 cut(s)	158, 207, 635, 639
LmnI	GCTCC	1 cut(s)	650
LpnPI	CCDG	7 cut(s)	45, 96, 207, 626, 639, 661, 666
MaeI	CTAG	3 cut(s)	20, 102, 642
MaeIII	GTNAC	2 cut(s)	140, 676
MboII	GAAGA	2 cut(s)	31, 106
MhlI	GDGCHC	2 cut(s)	164, 188
MluCI	AATT	3 cut(s)	45, 87, 145
MmeI	TCCRAC	6 cut(s)	353, 389, 449, 479, 485, 521
Mph1103I	ATGCAT	1 cut(s)	637
MspI	CCGG	1 cut(s)	83
MspR9I	CCNGG	2 cut(s)	84, 654
MvaI	CCWGG	1 cut(s)	654
MwoI	GCNNNNNNNGC	1 cut(s)	415
NciI	CCSGG	1 cut(s)	84
NlaIII	CATG	4 cut(s)	158, 207, 635, 639
NmuCI	GTSAC	1 cut(s)	676
NsiI	ATGCAT	1 cut(s)	637
NspI	RCATGY	3 cut(s)	158, 635, 639
PaeI	GCATGC	1 cut(s)	639
PfeI	GAWTC	1 cut(s)	97
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	73
Psp6I	CCWGG	1 cut(s)	652
PspGI	CCWGG	1 cut(s)	652
PsrI	GAACNNNNNNTAC	2 cut(s)	590, 622
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
SatI	GCNGC	1 cut(s)	72
ScrFI	CCNGG	2 cut(s)	84, 654
SduI	GDGCHC	2 cut(s)	164, 188
SfcI	CTRYAG	1 cut(s)	694
SphI	GCATGC	1 cut(s)	639
Sse9I	AATT	3 cut(s)	45, 87, 145
SsiI	CCGC	5 cut(s)	71, 356, 416, 437, 509
SspI	AATATT	2 cut(s)	302, 386
SspMI	CTAG	3 cut(s)	20, 102, 642
StyD4I	CCNGG	2 cut(s)	82, 652
TaaI	ACNGT	1 cut(s)	190
TaqII	GACCGA	1 cut(s)	80
TasI	AATT	3 cut(s)	45, 87, 145
TatI	WGTACW	1 cut(s)	129
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	1 cut(s)	97
TscAI	CASTG	1 cut(s)	620
TseFI	GTSAC	1 cut(s)	676
Tsp45I	GTSAC	1 cut(s)	676
TspRI	CASTG	1 cut(s)	620
VneI	GTGCAC	1 cut(s)	184
XceI	RCATGY	3 cut(s)	158, 635, 639
XspI	CTAG	3 cut(s)	20, 102, 642
Zsp2I	ATGCAT	1 cut(s)	637

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.