Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0015734

Physical Location & Seq

Genomic Coordinates Reverse (-)

3149412 .. 3159290

Gene Structure 9879 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00335770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGACGACAAGAGTAGTATCCAAAATTGGACCAAACTCGGATCAATTCTTGCGGAACCAAAACCAACTCAGTCACCGAGATTAAAGCAAAAGAATAGACGATCAAGATCGAATAGAAGACGGATTGAAAAAGCAAACCGTTATCGCAAAGATCTCTCGATGGTGAAGACCGAACATGAGTCCGATGATGGAATAAAAGTCCGAAGCAAAAGAAGGGCAAAACGCGGTTTAAGCTACAGCAAATGGCAGAGGATGATTGAAAATGAGTATGGACCCATGGAATACGAAATTGGTGCACCGGTAAAGCCTACATTGATCGGGCAGCTCAAATGGTTGTGGGACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

114

Amino Acids

13.56

Weight (kDa)

10.38

Isoelectric Point (pI)

66.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015734)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0343011 RchiOBHm_Chr2g0095631
rosa_laevigata	RLG00000013644 RLG00000014134
rosa_multiflora	Rmu_sc0017075.1_g000001 Rmu_sc0020478.1_g000008
rosa_roxburghii	Rroxscaffold_5G00335770
rosa_rugosa	Rorug06G0072600 Rorug06G0072700 Rorug06G0072800
rosa_samantha	Rh2BG593500 Rh2CG224600 Rh5CG321300 Rh5DG349100 Rh7CG289400 Rh7CG346900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	225
AciI	CCGC	2 cut(s)	53, 225
AclWI	GGATC	1 cut(s)	49
AgeI	ACCGGT	1 cut(s)	298
AgsI	TTSAA	2 cut(s)	128, 260
AjuI	GAANNNNNNNTTGG	2 cut(s)	273, 305
AluBI	AGCT	2 cut(s)	234, 325
AluI	AGCT	2 cut(s)	234, 325
Alw21I	GWGCWC	1 cut(s)	298
Alw44I	GTGCAC	1 cut(s)	294
AlwI	GGATC	1 cut(s)	49
ApaLI	GTGCAC	1 cut(s)	294
ApeKI	GCWGC	1 cut(s)	322
AsiGI	ACCGGT	1 cut(s)	298
AspS9I	GGNCC	2 cut(s)	30, 272
AsuHPI	GGTGA	2 cut(s)	66, 175
AvaII	GGWCC	2 cut(s)	30, 272
BaeGI	GKGCMC	1 cut(s)	298
BbsI	GAAGAC	2 cut(s)	124, 173
Bbv12I	GWGCWC	1 cut(s)	298
BbvI	GCAGC	1 cut(s)	334
BccI	CCATC	2 cut(s)	154, 182
BcgI	CGANNNNNNTGC	2 cut(s)	275, 309
BciVI	GTATCC	1 cut(s)	29
BfmI	CTRYAG	1 cut(s)	235
BfuI	GTATCC	1 cut(s)	29
BglII	AGATCT	1 cut(s)	151
BisI	GCNGC	1 cut(s)	323
BlsI	GCNGC	1 cut(s)	324
Bme18I	GGWCC	2 cut(s)	30, 272
BmgT120I	GGNCC	2 cut(s)	30, 272
BmiI	GGNNCC	2 cut(s)	57, 274
BpiI	GAAGAC	2 cut(s)	124, 173
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	298
Bse8I	GATNNNNATC	1 cut(s)	106
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	258
BseJI	GATNNNNATC	1 cut(s)	106
BseMII	CTCAG	1 cut(s)	83
BseSI	GKGCMC	1 cut(s)	298
BseXI	GCAGC	1 cut(s)	334
Bsh1236I	CGCG	1 cut(s)	225
BshTI	ACCGGT	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	298
BsiSI	CCGG	1 cut(s)	299
Bsp1286I	GDGCHC	1 cut(s)	298
Bsp143I	GATC	5 cut(s)	41, 101, 107, 151, 315
Bsp19I	CCATGG	1 cut(s)	276
BspACI	CCGC	2 cut(s)	53, 225
BspCNI	CTCAG	1 cut(s)	82
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	2 cut(s)	57, 274
BspPI	GGATC	1 cut(s)	49
BsrFI	RCCGGY	1 cut(s)	298
BssAI	RCCGGY	1 cut(s)	298
BssECI	CCNNGG	1 cut(s)	276
BssMI	GATC	5 cut(s)	41, 101, 107, 151, 315
BssT1I	CCWWGG	1 cut(s)	276
Bst4CI	ACNGT	1 cut(s)	140
BstDEI	CTNAG	1 cut(s)	69
BstDSI	CCRYGG	1 cut(s)	276
BstF5I	GGATG	1 cut(s)	258
BstFNI	CGCG	1 cut(s)	225
BstKTI	GATC	5 cut(s)	44, 104, 110, 154, 318
BstMBI	GATC	5 cut(s)	41, 101, 107, 151, 315
BstMWI	GCNNNNNNNGC	1 cut(s)	231
BstSFI	CTRYAG	1 cut(s)	235
BstSLI	GKGCMC	1 cut(s)	298
BstUI	CGCG	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	334
BstV2I	GAAGAC	2 cut(s)	124, 173
BstX2I	RGATCY	1 cut(s)	151
BstYI	RGATCY	1 cut(s)	151
BsuI	GTATCC	1 cut(s)	29
BtgI	CCRYGG	1 cut(s)	276
BtsCI	GGATG	1 cut(s)	258
Cfr10I	RCCGGY	1 cut(s)	298
Cfr13I	GGNCC	2 cut(s)	30, 272
CspAI	ACCGGT	1 cut(s)	298
CviAII	CATG	2 cut(s)	176, 277
CviJI	RGCY	3 cut(s)	234, 307, 325
CviKI_1	RGCY	3 cut(s)	234, 307, 325
DdeI	CTNAG	1 cut(s)	69
DpnI	GATC	5 cut(s)	43, 103, 109, 153, 317
DpnII	GATC	5 cut(s)	41, 101, 107, 151, 315
Eco130I	CCWWGG	1 cut(s)	276
Eco47I	GGWCC	2 cut(s)	30, 272
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	179, 280
FaiI	YATR	3 cut(s)	177, 270, 278
FatI	CATG	2 cut(s)	175, 276
Fnu4HI	GCNGC	1 cut(s)	323
FokI	GGATG	1 cut(s)	265
Fsp4HI	GCNGC	1 cut(s)	323
GluI	GCNGC	1 cut(s)	323
HapII	CCGG	1 cut(s)	299
Hin1II	CATG	2 cut(s)	179, 280
HinfI	GANTC	1 cut(s)	179
HpaII	CCGG	1 cut(s)	299
HphI	GGTGA	2 cut(s)	66, 175
Hpy166II	GTNNAC	1 cut(s)	296
Hpy188I	TCNGA	3 cut(s)	41, 184, 203
Hpy188III	TCNNGA	2 cut(s)	105, 157
Hpy8I	GTNNAC	1 cut(s)	296
HpyAV	CCTTC	1 cut(s)	207
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	1 cut(s)	296
HpyF10VI	GCNNNNNNNGC	1 cut(s)	231
HpyF3I	CTNAG	1 cut(s)	69
Hsp92II	CATG	2 cut(s)	179, 280
Kzo9I	GATC	5 cut(s)	41, 101, 107, 151, 315
LpnPI	CCDG	1 cut(s)	312
Lsp1109I	GCAGC	1 cut(s)	334
MaeIII	GTNAC	1 cut(s)	72
MalI	GATC	5 cut(s)	43, 103, 109, 153, 317
MboI	GATC	5 cut(s)	41, 101, 107, 151, 315
MboII	GAAGA	2 cut(s)	129, 178
MflI	RGATCY	1 cut(s)	151
MhlI	GDGCHC	1 cut(s)	298
MluCI	AATT	3 cut(s)	25, 45, 288
MlyI	GAGTC	1 cut(s)	188
MnlI	CCTC	1 cut(s)	243
MseI	TTAA	2 cut(s)	83, 230
MspI	CCGG	1 cut(s)	299
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	1 cut(s)	231
NcoI	CCATGG	1 cut(s)	276
NdeII	GATC	5 cut(s)	41, 101, 107, 151, 315
NlaIII	CATG	2 cut(s)	179, 280
NlaIV	GGNNCC	2 cut(s)	57, 274
NmuCI	GTSAC	1 cut(s)	72
PinAI	ACCGGT	1 cut(s)	298
PkrI	GCNGC	1 cut(s)	324
PleI	GAGTC	1 cut(s)	187
PpsI	GAGTC	1 cut(s)	187
PspN4I	GGNNCC	2 cut(s)	57, 274
PspPI	GGNCC	2 cut(s)	30, 272
PsuI	RGATCY	1 cut(s)	151
SaqAI	TTAA	2 cut(s)	83, 230
SatI	GCNGC	1 cut(s)	323
Sau3AI	GATC	5 cut(s)	41, 101, 107, 151, 315
Sau96I	GGNCC	2 cut(s)	30, 272
SchI	GAGTC	1 cut(s)	188
SduI	GDGCHC	1 cut(s)	298
SetI	ASST	2 cut(s)	236, 327
SfcI	CTRYAG	1 cut(s)	235
SinI	GGWCC	2 cut(s)	30, 272
Sse9I	AATT	3 cut(s)	25, 45, 288
SsiI	CCGC	2 cut(s)	53, 225
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	110, 158
TaqII	GACCGA	1 cut(s)	185
TasI	AATT	3 cut(s)	25, 45, 288
Tru1I	TTAA	2 cut(s)	83, 230
Tru9I	TTAA	2 cut(s)	83, 230
TseFI	GTSAC	1 cut(s)	72
TseI	GCWGC	1 cut(s)	322
Tsp45I	GTSAC	1 cut(s)	72
TspGWI	ACGGA	1 cut(s)	136
VneI	GTGCAC	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	30, 272

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.